Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06482

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06481 and MPMX19_06482 are separated by 15 nucleotidesMPMX19_06482 and MPMX19_06483 are separated by 12 nucleotidesMPMX19_06483 and MPMX19_06484 overlap by 7 nucleotides MPMX19_06481: MPMX19_06481 - Thiosulfate sulfurtransferase GlpE, at 264,594 to 266,210 _06481 MPMX19_06482: MPMX19_06482 - 3-mercaptopropionate dioxygenase, at 266,226 to 266,864 _06482 MPMX19_06483: MPMX19_06483 - Aliphatic sulfonates import ATP-binding protein SsuB, at 266,877 to 267,671 _06483 MPMX19_06484: MPMX19_06484 - hypothetical protein, at 267,665 to 268,717 _06484 Position (kb) 266 267Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 265.247 kb on - strand, within MPMX19_06481at 265.247 kb on - strand, within MPMX19_06481at 265.247 kb on - strand, within MPMX19_06481at 265.315 kb on + strand, within MPMX19_06481at 265.315 kb on + strand, within MPMX19_06481at 265.315 kb on + strand, within MPMX19_06481at 265.723 kb on + strand, within MPMX19_06481at 265.723 kb on + strand, within MPMX19_06481at 265.723 kb on + strand, within MPMX19_06481at 265.724 kb on - strand, within MPMX19_06481at 265.724 kb on - strand, within MPMX19_06481at 265.933 kb on + strand, within MPMX19_06481at 265.933 kb on + strand, within MPMX19_06481at 265.973 kb on - strand, within MPMX19_06481at 265.973 kb on - strand, within MPMX19_06481at 265.973 kb on - strand, within MPMX19_06481at 265.991 kb on - strand, within MPMX19_06481at 265.991 kb on - strand, within MPMX19_06481at 265.991 kb on - strand, within MPMX19_06481at 265.991 kb on - strand, within MPMX19_06481at 265.991 kb on - strand, within MPMX19_06481at 266.029 kb on + strand, within MPMX19_06481at 266.029 kb on + strand, within MPMX19_06481at 266.092 kb on + strandat 266.092 kb on + strandat 266.092 kb on + strandat 266.092 kb on + strandat 266.093 kb on - strandat 266.093 kb on - strandat 266.357 kb on + strand, within MPMX19_06482at 266.365 kb on + strand, within MPMX19_06482at 266.365 kb on + strand, within MPMX19_06482at 266.365 kb on + strand, within MPMX19_06482at 266.365 kb on + strand, within MPMX19_06482at 266.365 kb on + strand, within MPMX19_06482at 266.366 kb on - strand, within MPMX19_06482at 266.366 kb on - strand, within MPMX19_06482at 266.366 kb on - strand, within MPMX19_06482at 266.366 kb on - strand, within MPMX19_06482at 266.515 kb on + strand, within MPMX19_06482at 266.515 kb on + strand, within MPMX19_06482at 266.516 kb on - strand, within MPMX19_06482at 266.633 kb on - strand, within MPMX19_06482at 266.686 kb on + strand, within MPMX19_06482at 266.686 kb on + strand, within MPMX19_06482at 266.686 kb on + strand, within MPMX19_06482at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.241 kb on + strand, within MPMX19_06483at 267.242 kb on - strand, within MPMX19_06483at 267.367 kb on + strand, within MPMX19_06483at 267.814 kb on - strand, within MPMX19_06484

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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265,247 - MPMX19_06481 0.40 +0.5
265,247 - MPMX19_06481 0.40 +0.3
265,247 - MPMX19_06481 0.40 -1.2
265,315 + MPMX19_06481 0.45 +0.8
265,315 + MPMX19_06481 0.45 -0.3
265,315 + MPMX19_06481 0.45 -0.6
265,723 + MPMX19_06481 0.70 -0.9
265,723 + MPMX19_06481 0.70 -0.3
265,723 + MPMX19_06481 0.70 +0.1
265,724 - MPMX19_06481 0.70 +0.1
265,724 - MPMX19_06481 0.70 +0.1
265,933 + MPMX19_06481 0.83 -0.3
265,933 + MPMX19_06481 0.83 -0.2
265,973 - MPMX19_06481 0.85 -1.2
265,973 - MPMX19_06481 0.85 -1.7
265,973 - MPMX19_06481 0.85 -0.7
265,991 - MPMX19_06481 0.86 -0.9
265,991 - MPMX19_06481 0.86 +0.7
265,991 - MPMX19_06481 0.86 -0.3
265,991 - MPMX19_06481 0.86 -0.7
265,991 - MPMX19_06481 0.86 -1.1
266,029 + MPMX19_06481 0.89 -0.6
266,029 + MPMX19_06481 0.89 +0.1
266,092 + -0.9
266,092 + +0.8
266,092 + +0.0
266,092 + +1.0
266,093 - +0.4
266,093 - +0.1
266,357 + MPMX19_06482 0.21 -1.8
266,365 + MPMX19_06482 0.22 +0.6
266,365 + MPMX19_06482 0.22 +0.4
266,365 + MPMX19_06482 0.22 -0.3
266,365 + MPMX19_06482 0.22 -0.2
266,365 + MPMX19_06482 0.22 +0.6
266,366 - MPMX19_06482 0.22 +0.4
266,366 - MPMX19_06482 0.22 +0.3
266,366 - MPMX19_06482 0.22 +0.7
266,366 - MPMX19_06482 0.22 -0.3
266,515 + MPMX19_06482 0.45 -0.8
266,515 + MPMX19_06482 0.45 -1.9
266,516 - MPMX19_06482 0.45 +1.9
266,633 - MPMX19_06482 0.64 +0.2
266,686 + MPMX19_06482 0.72 +0.5
266,686 + MPMX19_06482 0.72 +0.2
266,686 + MPMX19_06482 0.72 -1.0
266,977 - MPMX19_06483 0.13 -0.5
266,977 - MPMX19_06483 0.13 -0.5
266,977 - MPMX19_06483 0.13 -0.0
266,977 - MPMX19_06483 0.13 -2.8
266,977 - MPMX19_06483 0.13 +0.7
266,977 - MPMX19_06483 0.13 -0.8
266,977 - MPMX19_06483 0.13 -0.9
267,138 + MPMX19_06483 0.33 -1.0
267,138 + MPMX19_06483 0.33 -1.8
267,138 + MPMX19_06483 0.33 -1.8
267,138 + MPMX19_06483 0.33 -0.9
267,138 + MPMX19_06483 0.33 +0.5
267,138 + MPMX19_06483 0.33 -2.0
267,138 + MPMX19_06483 0.33 +0.6
267,138 + MPMX19_06483 0.33 -1.0
267,138 + MPMX19_06483 0.33 +0.3
267,138 + MPMX19_06483 0.33 +0.1
267,138 + MPMX19_06483 0.33 -0.1
267,138 + MPMX19_06483 0.33 -0.7
267,138 + MPMX19_06483 0.33 +0.3
267,241 + MPMX19_06483 0.46 +0.4
267,242 - MPMX19_06483 0.46 +0.4
267,367 + MPMX19_06483 0.62 +0.6
267,814 - MPMX19_06484 0.14 -0.8

Or see this region's nucleotide sequence