Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05868

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05867 and MPMX19_05868 are separated by 40 nucleotidesMPMX19_05868 and MPMX19_05869 overlap by 4 nucleotides MPMX19_05867: MPMX19_05867 - Sialic acid TRAP transporter large permease protein SiaM, at 602,660 to 603,937 _05867 MPMX19_05868: MPMX19_05868 - hypothetical protein, at 603,978 to 604,571 _05868 MPMX19_05869: MPMX19_05869 - hypothetical protein, at 604,568 to 605,185 _05869 Position (kb) 603 604 605Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.069 kb on + strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.070 kb on - strand, within MPMX19_05867at 603.171 kb on + strand, within MPMX19_05867at 603.171 kb on + strand, within MPMX19_05867at 603.171 kb on + strand, within MPMX19_05867at 603.171 kb on + strand, within MPMX19_05867at 603.171 kb on + strand, within MPMX19_05867at 603.171 kb on + strand, within MPMX19_05867at 603.171 kb on + strand, within MPMX19_05867at 603.172 kb on - strand, within MPMX19_05867at 603.172 kb on - strand, within MPMX19_05867at 603.172 kb on - strand, within MPMX19_05867at 603.172 kb on - strand, within MPMX19_05867at 603.198 kb on + strand, within MPMX19_05867at 603.198 kb on + strand, within MPMX19_05867at 603.198 kb on + strand, within MPMX19_05867at 603.199 kb on - strand, within MPMX19_05867at 603.199 kb on - strand, within MPMX19_05867at 603.199 kb on - strand, within MPMX19_05867at 603.199 kb on - strand, within MPMX19_05867at 603.777 kb on + strand, within MPMX19_05867at 603.777 kb on + strand, within MPMX19_05867at 603.777 kb on + strand, within MPMX19_05867at 603.777 kb on + strand, within MPMX19_05867at 603.778 kb on - strand, within MPMX19_05867at 603.778 kb on - strand, within MPMX19_05867at 603.778 kb on - strand, within MPMX19_05867at 603.778 kb on - strand, within MPMX19_05867at 603.778 kb on - strand, within MPMX19_05867at 603.778 kb on - strand, within MPMX19_05867at 603.778 kb on - strand, within MPMX19_05867at 604.189 kb on + strand, within MPMX19_05868at 604.189 kb on + strand, within MPMX19_05868at 604.189 kb on + strand, within MPMX19_05868at 604.189 kb on + strand, within MPMX19_05868at 604.189 kb on + strand, within MPMX19_05868at 604.189 kb on + strand, within MPMX19_05868at 604.189 kb on + strand, within MPMX19_05868at 604.190 kb on - strand, within MPMX19_05868at 604.190 kb on - strand, within MPMX19_05868at 604.190 kb on - strand, within MPMX19_05868at 604.190 kb on - strand, within MPMX19_05868at 604.190 kb on - strand, within MPMX19_05868at 604.190 kb on - strand, within MPMX19_05868at 604.190 kb on - strand, within MPMX19_05868at 604.190 kb on - strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.273 kb on + strand, within MPMX19_05868at 604.274 kb on - strand, within MPMX19_05868at 604.274 kb on - strand, within MPMX19_05868at 604.274 kb on - strand, within MPMX19_05868at 604.274 kb on - strand, within MPMX19_05868at 604.274 kb on - strand, within MPMX19_05868at 604.274 kb on - strand, within MPMX19_05868at 604.274 kb on - strand, within MPMX19_05868at 604.274 kb on - strand, within MPMX19_05868at 604.274 kb on - strand, within MPMX19_05868at 604.274 kb on - strand, within MPMX19_05868at 604.282 kb on + strand, within MPMX19_05868at 604.282 kb on + strand, within MPMX19_05868at 604.282 kb on + strand, within MPMX19_05868at 604.282 kb on + strand, within MPMX19_05868at 604.282 kb on + strand, within MPMX19_05868at 604.282 kb on + strand, within MPMX19_05868at 604.282 kb on + strand, within MPMX19_05868at 604.283 kb on - strand, within MPMX19_05868at 604.283 kb on - strand, within MPMX19_05868at 604.283 kb on - strand, within MPMX19_05868at 604.283 kb on - strand, within MPMX19_05868at 604.468 kb on + strand, within MPMX19_05868at 604.468 kb on + strand, within MPMX19_05868at 604.468 kb on + strand, within MPMX19_05868at 604.468 kb on + strand, within MPMX19_05868at 604.468 kb on + strand, within MPMX19_05868at 604.468 kb on + strand, within MPMX19_05868at 604.468 kb on + strand, within MPMX19_05868at 604.468 kb on + strand, within MPMX19_05868at 604.469 kb on - strand, within MPMX19_05868at 604.469 kb on - strand, within MPMX19_05868at 604.469 kb on - strand, within MPMX19_05868at 604.469 kb on - strand, within MPMX19_05868at 604.469 kb on - strand, within MPMX19_05868at 604.469 kb on - strand, within MPMX19_05868at 604.469 kb on - strand, within MPMX19_05868at 604.680 kb on + strand, within MPMX19_05869at 604.680 kb on + strand, within MPMX19_05869at 604.681 kb on - strand, within MPMX19_05869at 604.681 kb on - strand, within MPMX19_05869at 604.695 kb on + strand, within MPMX19_05869at 605.129 kb on + strandat 605.129 kb on + strandat 605.129 kb on + strandat 605.130 kb on - strandat 605.130 kb on - strandat 605.130 kb on - strandat 605.263 kb on + strandat 605.264 kb on - strandat 605.264 kb on - strandat 605.264 kb on - strandat 605.356 kb on - strandat 605.376 kb on + strandat 605.376 kb on + strandat 605.377 kb on - strandat 605.483 kb on + strandat 605.483 kb on + strandat 605.483 kb on + strandat 605.484 kb on - strandat 605.484 kb on - strandat 605.484 kb on - strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.488 kb on + strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strandat 605.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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603,069 + MPMX19_05867 0.32 -1.2
603,069 + MPMX19_05867 0.32 +1.9
603,069 + MPMX19_05867 0.32 -0.0
603,069 + MPMX19_05867 0.32 +0.2
603,069 + MPMX19_05867 0.32 +0.1
603,069 + MPMX19_05867 0.32 +0.1
603,069 + MPMX19_05867 0.32 -0.8
603,069 + MPMX19_05867 0.32 +0.5
603,069 + MPMX19_05867 0.32 -0.7
603,069 + MPMX19_05867 0.32 -1.9
603,069 + MPMX19_05867 0.32 -0.0
603,069 + MPMX19_05867 0.32 -0.5
603,069 + MPMX19_05867 0.32 -0.3
603,069 + MPMX19_05867 0.32 +0.1
603,069 + MPMX19_05867 0.32 -0.0
603,069 + MPMX19_05867 0.32 +0.6
603,069 + MPMX19_05867 0.32 -0.3
603,070 - MPMX19_05867 0.32 +0.6
603,070 - MPMX19_05867 0.32 -1.3
603,070 - MPMX19_05867 0.32 +1.0
603,070 - MPMX19_05867 0.32 -0.0
603,070 - MPMX19_05867 0.32 -0.0
603,070 - MPMX19_05867 0.32 -0.8
603,070 - MPMX19_05867 0.32 -0.1
603,070 - MPMX19_05867 0.32 -1.0
603,070 - MPMX19_05867 0.32 +0.7
603,070 - MPMX19_05867 0.32 -0.6
603,070 - MPMX19_05867 0.32 +0.1
603,070 - MPMX19_05867 0.32 -1.3
603,070 - MPMX19_05867 0.32 +0.7
603,070 - MPMX19_05867 0.32 -0.9
603,070 - MPMX19_05867 0.32 -0.8
603,070 - MPMX19_05867 0.32 +0.4
603,070 - MPMX19_05867 0.32 -0.5
603,070 - MPMX19_05867 0.32 -1.0
603,070 - MPMX19_05867 0.32 -1.0
603,070 - MPMX19_05867 0.32 -1.6
603,070 - MPMX19_05867 0.32 -0.1
603,171 + MPMX19_05867 0.40 -0.8
603,171 + MPMX19_05867 0.40 -2.4
603,171 + MPMX19_05867 0.40 +1.2
603,171 + MPMX19_05867 0.40 +0.7
603,171 + MPMX19_05867 0.40 -0.8
603,171 + MPMX19_05867 0.40 -1.4
603,171 + MPMX19_05867 0.40 -0.4
603,172 - MPMX19_05867 0.40 -1.0
603,172 - MPMX19_05867 0.40 -1.1
603,172 - MPMX19_05867 0.40 -0.7
603,172 - MPMX19_05867 0.40 +1.6
603,198 + MPMX19_05867 0.42 -0.6
603,198 + MPMX19_05867 0.42 -0.4
603,198 + MPMX19_05867 0.42 -1.0
603,199 - MPMX19_05867 0.42 -1.0
603,199 - MPMX19_05867 0.42 -0.0
603,199 - MPMX19_05867 0.42 -0.0
603,199 - MPMX19_05867 0.42 +0.3
603,777 + MPMX19_05867 0.87 -2.0
603,777 + MPMX19_05867 0.87 -2.1
603,777 + MPMX19_05867 0.87 +0.8
603,777 + MPMX19_05867 0.87 -0.4
603,778 - MPMX19_05867 0.87 +1.6
603,778 - MPMX19_05867 0.87 +0.7
603,778 - MPMX19_05867 0.87 +1.6
603,778 - MPMX19_05867 0.87 -1.0
603,778 - MPMX19_05867 0.87 -0.3
603,778 - MPMX19_05867 0.87 -0.9
603,778 - MPMX19_05867 0.87 -0.6
604,189 + MPMX19_05868 0.36 -2.1
604,189 + MPMX19_05868 0.36 +0.1
604,189 + MPMX19_05868 0.36 +0.1
604,189 + MPMX19_05868 0.36 +0.3
604,189 + MPMX19_05868 0.36 +0.3
604,189 + MPMX19_05868 0.36 -1.7
604,189 + MPMX19_05868 0.36 -1.7
604,190 - MPMX19_05868 0.36 -1.3
604,190 - MPMX19_05868 0.36 -1.3
604,190 - MPMX19_05868 0.36 -1.0
604,190 - MPMX19_05868 0.36 -0.8
604,190 - MPMX19_05868 0.36 -0.8
604,190 - MPMX19_05868 0.36 -0.4
604,190 - MPMX19_05868 0.36 -0.3
604,190 - MPMX19_05868 0.36 -0.7
604,273 + MPMX19_05868 0.50 -0.8
604,273 + MPMX19_05868 0.50 -0.8
604,273 + MPMX19_05868 0.50 +0.1
604,273 + MPMX19_05868 0.50 -0.6
604,273 + MPMX19_05868 0.50 -0.8
604,273 + MPMX19_05868 0.50 -0.3
604,273 + MPMX19_05868 0.50 -0.8
604,273 + MPMX19_05868 0.50 -1.4
604,273 + MPMX19_05868 0.50 -2.3
604,273 + MPMX19_05868 0.50 -0.4
604,273 + MPMX19_05868 0.50 +0.3
604,273 + MPMX19_05868 0.50 -0.4
604,273 + MPMX19_05868 0.50 +0.1
604,274 - MPMX19_05868 0.50 +0.2
604,274 - MPMX19_05868 0.50 +2.1
604,274 - MPMX19_05868 0.50 +0.4
604,274 - MPMX19_05868 0.50 +0.1
604,274 - MPMX19_05868 0.50 -0.2
604,274 - MPMX19_05868 0.50 -1.4
604,274 - MPMX19_05868 0.50 -1.4
604,274 - MPMX19_05868 0.50 -2.0
604,274 - MPMX19_05868 0.50 -0.2
604,274 - MPMX19_05868 0.50 -0.3
604,282 + MPMX19_05868 0.51 -0.4
604,282 + MPMX19_05868 0.51 +0.2
604,282 + MPMX19_05868 0.51 -0.8
604,282 + MPMX19_05868 0.51 +0.7
604,282 + MPMX19_05868 0.51 -0.1
604,282 + MPMX19_05868 0.51 -0.4
604,282 + MPMX19_05868 0.51 -0.2
604,283 - MPMX19_05868 0.51 -2.8
604,283 - MPMX19_05868 0.51 +1.0
604,283 - MPMX19_05868 0.51 -0.6
604,283 - MPMX19_05868 0.51 -1.1
604,468 + MPMX19_05868 0.82 -0.1
604,468 + MPMX19_05868 0.82 -0.2
604,468 + MPMX19_05868 0.82 -0.1
604,468 + MPMX19_05868 0.82 +0.6
604,468 + MPMX19_05868 0.82 -0.0
604,468 + MPMX19_05868 0.82 -0.2
604,468 + MPMX19_05868 0.82 -0.3
604,468 + MPMX19_05868 0.82 -0.2
604,469 - MPMX19_05868 0.83 -1.5
604,469 - MPMX19_05868 0.83 +1.3
604,469 - MPMX19_05868 0.83 -0.9
604,469 - MPMX19_05868 0.83 -1.0
604,469 - MPMX19_05868 0.83 -1.4
604,469 - MPMX19_05868 0.83 -0.4
604,469 - MPMX19_05868 0.83 +0.1
604,680 + MPMX19_05869 0.18 +0.6
604,680 + MPMX19_05869 0.18 +0.3
604,681 - MPMX19_05869 0.18 -0.3
604,681 - MPMX19_05869 0.18 -0.8
604,695 + MPMX19_05869 0.21 +0.6
605,129 + -0.3
605,129 + -1.3
605,129 + -1.6
605,130 - +1.6
605,130 - -1.6
605,130 - -2.0
605,263 + -0.8
605,264 - +0.3
605,264 - -1.9
605,264 - -1.6
605,356 - -0.5
605,376 + -2.8
605,376 + +0.4
605,377 - +0.9
605,483 + -0.6
605,483 + -0.4
605,483 + -1.1
605,484 - +0.4
605,484 - +0.7
605,484 - +0.2
605,488 + -1.0
605,488 + -2.0
605,488 + +0.6
605,488 + -1.0
605,488 + -0.6
605,488 + -0.4
605,488 + -0.8
605,488 + -0.2
605,488 + -0.8
605,488 + -0.4
605,488 + +0.1
605,488 + +0.2
605,488 + -1.9
605,488 + -0.9
605,488 + +1.3
605,488 + +1.2
605,488 + +0.5
605,488 + +1.6
605,488 + +0.3
605,488 + +0.4
605,488 + +0.6
605,488 + +0.2
605,488 + +0.1
605,488 + -1.4
605,489 - -0.6
605,489 - +0.2
605,489 - +0.2
605,489 - -0.0
605,489 - +0.4
605,489 - -0.1
605,489 - -0.0
605,489 - +1.9
605,489 - -0.2
605,489 - -0.6
605,489 - -2.1
605,489 - +0.6
605,489 - +0.1
605,489 - -0.5
605,489 - +0.6
605,489 - -0.3
605,489 - -1.4
605,489 - -0.3
605,489 - -0.4
605,489 - +0.1
605,489 - -0.4
605,489 - +0.2
605,489 - +0.7
605,489 - -0.3

Or see this region's nucleotide sequence