Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05774

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05772 and MPMX19_05773 are separated by 7 nucleotidesMPMX19_05773 and MPMX19_05774 are separated by 47 nucleotidesMPMX19_05774 and MPMX19_05775 are separated by 28 nucleotides MPMX19_05772: MPMX19_05772 - 1,2-phenylacetyl-CoA epoxidase, subunit C, at 494,833 to 495,597 _05772 MPMX19_05773: MPMX19_05773 - Putative 1,2-phenylacetyl-CoA epoxidase, subunit D, at 495,605 to 496,126 _05773 MPMX19_05774: MPMX19_05774 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 496,174 to 497,253 _05774 MPMX19_05775: MPMX19_05775 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 497,282 to 498,973 _05775 Position (kb) 496 497 498Strain fitness (log2 ratio) -2 -1 0 1 2at 495.244 kb on + strand, within MPMX19_05772at 495.244 kb on + strand, within MPMX19_05772at 495.244 kb on + strand, within MPMX19_05772at 495.245 kb on - strand, within MPMX19_05772at 495.245 kb on - strand, within MPMX19_05772at 495.245 kb on - strand, within MPMX19_05772at 495.343 kb on + strand, within MPMX19_05772at 495.343 kb on + strand, within MPMX19_05772at 495.344 kb on - strand, within MPMX19_05772at 495.344 kb on - strand, within MPMX19_05772at 495.541 kb on + strandat 495.541 kb on + strandat 495.541 kb on + strandat 495.542 kb on - strandat 495.542 kb on - strandat 495.578 kb on - strandat 495.791 kb on + strand, within MPMX19_05773at 495.791 kb on + strand, within MPMX19_05773at 495.791 kb on + strand, within MPMX19_05773at 495.791 kb on + strand, within MPMX19_05773at 495.791 kb on + strand, within MPMX19_05773at 495.791 kb on + strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 496.082 kb on + strandat 496.159 kb on - strandat 496.159 kb on - strandat 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.348 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.619 kb on - strand, within MPMX19_05774at 496.681 kb on + strand, within MPMX19_05774at 496.681 kb on + strand, within MPMX19_05774at 496.681 kb on + strand, within MPMX19_05774at 496.681 kb on + strand, within MPMX19_05774at 496.681 kb on + strand, within MPMX19_05774at 496.681 kb on + strand, within MPMX19_05774at 496.681 kb on + strand, within MPMX19_05774at 496.682 kb on - strand, within MPMX19_05774at 496.682 kb on - strand, within MPMX19_05774at 496.682 kb on - strand, within MPMX19_05774at 496.682 kb on - strand, within MPMX19_05774at 496.683 kb on + strand, within MPMX19_05774at 496.684 kb on - strand, within MPMX19_05774at 496.684 kb on - strand, within MPMX19_05774at 496.684 kb on - strand, within MPMX19_05774at 496.684 kb on - strand, within MPMX19_05774at 497.026 kb on + strand, within MPMX19_05774at 497.026 kb on + strand, within MPMX19_05774at 497.026 kb on + strand, within MPMX19_05774at 497.026 kb on + strand, within MPMX19_05774at 497.026 kb on + strand, within MPMX19_05774at 497.026 kb on + strand, within MPMX19_05774at 497.026 kb on + strand, within MPMX19_05774at 497.027 kb on - strand, within MPMX19_05774at 497.027 kb on - strand, within MPMX19_05774at 497.027 kb on - strand, within MPMX19_05774at 497.027 kb on - strand, within MPMX19_05774at 497.027 kb on - strand, within MPMX19_05774at 497.027 kb on - strand, within MPMX19_05774at 497.027 kb on - strand, within MPMX19_05774at 497.027 kb on - strand, within MPMX19_05774at 497.027 kb on - strand, within MPMX19_05774at 497.027 kb on - strand, within MPMX19_05774at 497.027 kb on - strand, within MPMX19_05774at 497.080 kb on + strand, within MPMX19_05774at 497.081 kb on - strand, within MPMX19_05774at 497.155 kb on + strandat 497.155 kb on + strandat 497.156 kb on - strandat 497.156 kb on - strandat 497.156 kb on - strandat 497.156 kb on - strandat 497.156 kb on - strandat 497.156 kb on - strandat 497.156 kb on - strandat 497.156 kb on - strandat 497.156 kb on - strandat 497.188 kb on + strandat 497.188 kb on + strandat 497.188 kb on + strandat 497.189 kb on - strandat 497.189 kb on - strandat 497.189 kb on - strandat 497.189 kb on - strandat 497.189 kb on - strandat 497.363 kb on + strandat 497.363 kb on + strandat 497.363 kb on + strandat 497.363 kb on + strandat 497.363 kb on + strandat 497.364 kb on - strandat 497.364 kb on - strandat 497.364 kb on - strandat 497.364 kb on - strandat 497.364 kb on - strandat 497.402 kb on + strandat 497.403 kb on - strandat 497.774 kb on + strand, within MPMX19_05775at 497.774 kb on + strand, within MPMX19_05775at 498.137 kb on + strand, within MPMX19_05775at 498.137 kb on + strand, within MPMX19_05775at 498.137 kb on + strand, within MPMX19_05775at 498.138 kb on - strand, within MPMX19_05775at 498.138 kb on - strand, within MPMX19_05775at 498.138 kb on - strand, within MPMX19_05775at 498.138 kb on - strand, within MPMX19_05775at 498.138 kb on - strand, within MPMX19_05775at 498.197 kb on + strand, within MPMX19_05775at 498.198 kb on - strand, within MPMX19_05775at 498.198 kb on - strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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495,244 + MPMX19_05772 0.54 +0.1
495,244 + MPMX19_05772 0.54 -0.2
495,244 + MPMX19_05772 0.54 -1.1
495,245 - MPMX19_05772 0.54 -2.0
495,245 - MPMX19_05772 0.54 +0.2
495,245 - MPMX19_05772 0.54 -0.7
495,343 + MPMX19_05772 0.67 -0.8
495,343 + MPMX19_05772 0.67 -2.0
495,344 - MPMX19_05772 0.67 +0.4
495,344 - MPMX19_05772 0.67 -1.0
495,541 + -0.2
495,541 + -0.1
495,541 + -1.9
495,542 - -0.1
495,542 - -0.8
495,578 - -0.6
495,791 + MPMX19_05773 0.36 +2.0
495,791 + MPMX19_05773 0.36 -1.0
495,791 + MPMX19_05773 0.36 +0.6
495,791 + MPMX19_05773 0.36 +0.3
495,791 + MPMX19_05773 0.36 -0.4
495,791 + MPMX19_05773 0.36 -0.3
495,792 - MPMX19_05773 0.36 +0.8
495,792 - MPMX19_05773 0.36 -0.3
495,792 - MPMX19_05773 0.36 -0.4
495,792 - MPMX19_05773 0.36 -1.9
495,792 - MPMX19_05773 0.36 -0.6
495,792 - MPMX19_05773 0.36 -0.4
495,792 - MPMX19_05773 0.36 -0.9
496,082 + -0.5
496,159 - -0.0
496,159 - -1.8
496,300 + MPMX19_05774 0.12 -0.6
496,300 + MPMX19_05774 0.12 -1.0
496,300 + MPMX19_05774 0.12 -1.3
496,300 + MPMX19_05774 0.12 +0.2
496,300 + MPMX19_05774 0.12 +0.9
496,300 + MPMX19_05774 0.12 -0.2
496,300 + MPMX19_05774 0.12 -1.6
496,301 - MPMX19_05774 0.12 -1.0
496,301 - MPMX19_05774 0.12 +0.0
496,301 - MPMX19_05774 0.12 +0.7
496,301 - MPMX19_05774 0.12 +0.2
496,301 - MPMX19_05774 0.12 -0.3
496,301 - MPMX19_05774 0.12 -0.2
496,301 - MPMX19_05774 0.12 -0.3
496,301 - MPMX19_05774 0.12 -0.4
496,301 - MPMX19_05774 0.12 -0.4
496,348 + MPMX19_05774 0.16 -1.1
496,489 + MPMX19_05774 0.29 -0.6
496,489 + MPMX19_05774 0.29 -0.7
496,489 + MPMX19_05774 0.29 -1.1
496,489 + MPMX19_05774 0.29 -0.1
496,489 + MPMX19_05774 0.29 -1.0
496,489 + MPMX19_05774 0.29 +2.1
496,489 + MPMX19_05774 0.29 -0.8
496,489 + MPMX19_05774 0.29 +1.4
496,489 + MPMX19_05774 0.29 -0.4
496,489 + MPMX19_05774 0.29 +0.8
496,489 + MPMX19_05774 0.29 +0.6
496,489 + MPMX19_05774 0.29 +1.1
496,489 + MPMX19_05774 0.29 +0.3
496,489 + MPMX19_05774 0.29 +2.1
496,489 + MPMX19_05774 0.29 -0.2
496,490 - MPMX19_05774 0.29 +0.2
496,490 - MPMX19_05774 0.29 +0.1
496,490 - MPMX19_05774 0.29 +0.1
496,490 - MPMX19_05774 0.29 -0.1
496,490 - MPMX19_05774 0.29 -0.0
496,490 - MPMX19_05774 0.29 -0.6
496,490 - MPMX19_05774 0.29 -0.4
496,490 - MPMX19_05774 0.29 +0.1
496,522 + MPMX19_05774 0.32 +0.6
496,522 + MPMX19_05774 0.32 -0.3
496,522 + MPMX19_05774 0.32 +2.6
496,522 + MPMX19_05774 0.32 -0.4
496,522 + MPMX19_05774 0.32 -1.0
496,522 + MPMX19_05774 0.32 -0.8
496,522 + MPMX19_05774 0.32 -0.1
496,522 + MPMX19_05774 0.32 -0.4
496,522 + MPMX19_05774 0.32 +0.7
496,522 + MPMX19_05774 0.32 +1.0
496,522 + MPMX19_05774 0.32 -0.4
496,522 + MPMX19_05774 0.32 +0.9
496,522 + MPMX19_05774 0.32 -0.6
496,522 + MPMX19_05774 0.32 +2.0
496,522 + MPMX19_05774 0.32 -0.8
496,522 + MPMX19_05774 0.32 -0.1
496,522 + MPMX19_05774 0.32 +0.1
496,522 + MPMX19_05774 0.32 -1.0
496,523 - MPMX19_05774 0.32 -0.4
496,523 - MPMX19_05774 0.32 -0.3
496,523 - MPMX19_05774 0.32 -1.8
496,523 - MPMX19_05774 0.32 -0.1
496,523 - MPMX19_05774 0.32 -0.3
496,523 - MPMX19_05774 0.32 -1.3
496,523 - MPMX19_05774 0.32 -0.4
496,523 - MPMX19_05774 0.32 -0.6
496,523 - MPMX19_05774 0.32 -1.0
496,523 - MPMX19_05774 0.32 -1.3
496,523 - MPMX19_05774 0.32 -0.3
496,619 - MPMX19_05774 0.41 -0.5
496,681 + MPMX19_05774 0.47 -1.0
496,681 + MPMX19_05774 0.47 -0.3
496,681 + MPMX19_05774 0.47 -0.6
496,681 + MPMX19_05774 0.47 +0.7
496,681 + MPMX19_05774 0.47 +0.1
496,681 + MPMX19_05774 0.47 -1.4
496,681 + MPMX19_05774 0.47 +0.4
496,682 - MPMX19_05774 0.47 -0.9
496,682 - MPMX19_05774 0.47 +0.1
496,682 - MPMX19_05774 0.47 -1.4
496,682 - MPMX19_05774 0.47 -0.6
496,683 + MPMX19_05774 0.47 -0.2
496,684 - MPMX19_05774 0.47 -0.7
496,684 - MPMX19_05774 0.47 -0.1
496,684 - MPMX19_05774 0.47 +1.0
496,684 - MPMX19_05774 0.47 +0.3
497,026 + MPMX19_05774 0.79 +1.0
497,026 + MPMX19_05774 0.79 -1.2
497,026 + MPMX19_05774 0.79 -1.6
497,026 + MPMX19_05774 0.79 +0.6
497,026 + MPMX19_05774 0.79 -1.1
497,026 + MPMX19_05774 0.79 +0.3
497,026 + MPMX19_05774 0.79 -1.0
497,027 - MPMX19_05774 0.79 -0.6
497,027 - MPMX19_05774 0.79 +0.9
497,027 - MPMX19_05774 0.79 +0.7
497,027 - MPMX19_05774 0.79 +1.0
497,027 - MPMX19_05774 0.79 -1.0
497,027 - MPMX19_05774 0.79 -1.8
497,027 - MPMX19_05774 0.79 +0.2
497,027 - MPMX19_05774 0.79 -0.3
497,027 - MPMX19_05774 0.79 +0.6
497,027 - MPMX19_05774 0.79 -1.2
497,027 - MPMX19_05774 0.79 -1.9
497,080 + MPMX19_05774 0.84 -0.3
497,081 - MPMX19_05774 0.84 +1.0
497,155 + +1.0
497,155 + -2.1
497,156 - -0.7
497,156 - -0.1
497,156 - +0.5
497,156 - +0.6
497,156 - -0.3
497,156 - +0.3
497,156 - -0.3
497,156 - -0.1
497,156 - -1.3
497,188 + -1.3
497,188 + +0.1
497,188 + +0.4
497,189 - -0.8
497,189 - -0.7
497,189 - +0.4
497,189 - -1.8
497,189 - +0.4
497,363 + +0.3
497,363 + -0.4
497,363 + +0.6
497,363 + -0.8
497,363 + +1.1
497,364 - -0.6
497,364 - -0.3
497,364 - -2.4
497,364 - -0.6
497,364 - -1.2
497,402 + +1.2
497,403 - -0.7
497,774 + MPMX19_05775 0.29 -0.9
497,774 + MPMX19_05775 0.29 +0.6
498,137 + MPMX19_05775 0.51 -1.3
498,137 + MPMX19_05775 0.51 -0.4
498,137 + MPMX19_05775 0.51 +0.2
498,138 - MPMX19_05775 0.51 -1.0
498,138 - MPMX19_05775 0.51 +0.0
498,138 - MPMX19_05775 0.51 -0.3
498,138 - MPMX19_05775 0.51 +2.4
498,138 - MPMX19_05775 0.51 +0.5
498,197 + MPMX19_05775 0.54 -0.8
498,198 - MPMX19_05775 0.54 +0.5
498,198 - MPMX19_05775 0.54 +0.4
498,220 + MPMX19_05775 0.55 -0.0
498,220 + MPMX19_05775 0.55 +0.1
498,220 + MPMX19_05775 0.55 +0.2
498,220 + MPMX19_05775 0.55 +0.2
498,220 + MPMX19_05775 0.55 +0.9
498,220 + MPMX19_05775 0.55 +0.6
498,220 + MPMX19_05775 0.55 -0.5
498,221 - MPMX19_05775 0.55 -1.3
498,221 - MPMX19_05775 0.55 -0.8
498,221 - MPMX19_05775 0.55 -0.8
498,221 - MPMX19_05775 0.55 +0.5
498,221 - MPMX19_05775 0.55 -1.1
498,221 - MPMX19_05775 0.55 +0.4
498,221 - MPMX19_05775 0.55 -0.1
498,221 - MPMX19_05775 0.55 -0.0
498,221 - MPMX19_05775 0.55 -1.4
498,221 - MPMX19_05775 0.55 +0.4
498,221 - MPMX19_05775 0.55 -0.7
498,221 - MPMX19_05775 0.55 -0.4
498,221 - MPMX19_05775 0.55 +0.3
498,221 - MPMX19_05775 0.55 -1.9
498,221 - MPMX19_05775 0.55 -0.2

Or see this region's nucleotide sequence