Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05588 and MPMX19_05589 are separated by 12 nucleotides MPMX19_05589 and MPMX19_05590 are separated by 134 nucleotides MPMX19_05590 and MPMX19_05591 are separated by 31 nucleotides MPMX19_05591 and MPMX19_05592 are separated by 153 nucleotides
MPMX19_05588: MPMX19_05588 - Galactose/methyl galactoside import ATP-binding protein MglA, at 299,049 to 300,593
_05588
MPMX19_05589: MPMX19_05589 - hypothetical protein, at 300,606 to 301,319
_05589
MPMX19_05590: MPMX19_05590 - HTH-type transcriptional regulator SyrM 1, at 301,454 to 302,374
_05590
MPMX19_05591: MPMX19_05591 - hypothetical protein, at 302,406 to 302,834
_05591
MPMX19_05592: MPMX19_05592 - Glycine cleavage system transcriptional activator, at 302,988 to 303,872
_05592
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1 at 300.631 kb on + strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.641 kb on - strand at 300.641 kb on - strand at 300.844 kb on + strand, within MPMX19_05589 at 300.845 kb on - strand, within MPMX19_05589 at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.419 kb on + strand at 301.420 kb on - strand at 301.443 kb on - strand at 301.641 kb on - strand, within MPMX19_05590 at 301.641 kb on - strand, within MPMX19_05590 at 301.641 kb on - strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.135 kb on + strand, within MPMX19_05590 at 302.136 kb on - strand, within MPMX19_05590 at 302.366 kb on + strand at 302.367 kb on - strand at 302.372 kb on + strand at 302.372 kb on + strand at 302.373 kb on - strand at 302.373 kb on - strand at 302.407 kb on + strand at 302.408 kb on - strand at 302.408 kb on - strand at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.767 kb on + strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.917 kb on + strand at 302.918 kb on - strand at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 300,631 + -0.0 300,632 - -0.4 300,632 - +0.9 300,632 - -0.0 300,632 - +0.3 300,632 - -0.7 300,640 + -1.1 300,640 + -2.0 300,640 + +0.7 300,640 + +0.6 300,640 + -0.5 300,640 + +0.4 300,640 + -1.6 300,641 - -0.2 300,641 - -1.2 300,844 + MPMX19_05589 0.33 +0.8 300,845 - MPMX19_05589 0.33 -0.6 301,356 + -1.7 301,356 + -0.3 301,356 + +0.1 301,356 + -0.9 301,356 + -0.3 301,356 + -0.1 301,356 + -1.6 301,356 + +1.4 301,356 + +0.1 301,356 + +0.2 301,356 + -0.8 301,356 + -0.4 301,356 + +0.2 301,356 + +0.2 301,356 + +0.2 301,356 + -1.1 301,356 + -0.5 301,356 + +1.1 301,356 + +0.6 301,356 + -1.4 301,356 + +0.9 301,356 + -0.6 301,356 + -0.7 301,356 + -0.1 301,356 + -0.6 301,356 + -0.2 301,356 + +0.2 301,356 + -0.6 301,356 + -0.0 301,357 - -0.5 301,357 - +0.8 301,357 - -0.3 301,357 - -0.0 301,357 - -0.4 301,357 - -0.4 301,357 - +0.2 301,357 - +0.6 301,357 - -0.4 301,357 - +0.3 301,357 - -0.7 301,357 - +0.6 301,357 - -0.3 301,357 - -0.9 301,357 - -0.4 301,357 - -1.6 301,357 - +0.4 301,357 - +0.1 301,357 - -1.4 301,357 - +0.4 301,357 - -0.1 301,357 - +0.7 301,357 - +1.0 301,357 - +0.1 301,357 - -0.3 301,357 - -1.1 301,357 - +0.1 301,357 - -0.0 301,357 - -0.8 301,357 - +0.2 301,357 - -0.1 301,357 - +0.1 301,357 - -0.4 301,419 + -0.9 301,420 - +0.2 301,443 - -0.1 301,641 - MPMX19_05590 0.20 -0.2 301,641 - MPMX19_05590 0.20 +0.2 301,641 - MPMX19_05590 0.20 -1.3 302,021 + MPMX19_05590 0.62 -0.6 302,021 + MPMX19_05590 0.62 -0.5 302,021 + MPMX19_05590 0.62 -2.0 302,021 + MPMX19_05590 0.62 -1.1 302,021 + MPMX19_05590 0.62 -0.9 302,022 - MPMX19_05590 0.62 -0.2 302,022 - MPMX19_05590 0.62 -0.3 302,022 - MPMX19_05590 0.62 -0.0 302,022 - MPMX19_05590 0.62 -1.4 302,022 - MPMX19_05590 0.62 +1.0 302,022 - MPMX19_05590 0.62 -0.6 302,135 + MPMX19_05590 0.74 -0.8 302,136 - MPMX19_05590 0.74 -0.3 302,366 + +0.2 302,367 - +1.1 302,372 + -1.0 302,372 + +1.0 302,373 - -1.9 302,373 - -0.6 302,407 + -1.9 302,408 - -0.9 302,408 - -0.4 302,521 + MPMX19_05591 0.27 -0.7 302,521 + MPMX19_05591 0.27 -1.1 302,521 + MPMX19_05591 0.27 -0.3 302,521 + MPMX19_05591 0.27 -0.9 302,521 + MPMX19_05591 0.27 -0.0 302,521 + MPMX19_05591 0.27 +0.4 302,521 + MPMX19_05591 0.27 -0.9 302,521 + MPMX19_05591 0.27 -0.1 302,522 - MPMX19_05591 0.27 -1.0 302,522 - MPMX19_05591 0.27 -0.7 302,522 - MPMX19_05591 0.27 -0.4 302,522 - MPMX19_05591 0.27 -0.3 302,522 - MPMX19_05591 0.27 +0.4 302,522 - MPMX19_05591 0.27 -1.2 302,767 + MPMX19_05591 0.84 -1.3 302,768 - MPMX19_05591 0.84 -0.7 302,768 - MPMX19_05591 0.84 -0.6 302,768 - MPMX19_05591 0.84 +0.2 302,768 - MPMX19_05591 0.84 -1.3 302,768 - MPMX19_05591 0.84 -1.5 302,768 - MPMX19_05591 0.84 -0.0 302,768 - MPMX19_05591 0.84 -0.2 302,768 - MPMX19_05591 0.84 -1.4 302,768 - MPMX19_05591 0.84 -0.9 302,917 + -0.8 302,918 - -0.4 303,198 + MPMX19_05592 0.24 -1.0 303,198 + MPMX19_05592 0.24 -0.9 303,198 + MPMX19_05592 0.24 +0.2 303,198 + MPMX19_05592 0.24 +1.1 303,198 + MPMX19_05592 0.24 -1.7 303,198 + MPMX19_05592 0.24 -0.3 303,198 + MPMX19_05592 0.24 +0.3 303,198 + MPMX19_05592 0.24 -0.9 303,198 + MPMX19_05592 0.24 +1.6 303,198 + MPMX19_05592 0.24 -2.4 303,198 + MPMX19_05592 0.24 -0.6 303,198 + MPMX19_05592 0.24 -1.3 303,199 - MPMX19_05592 0.24 -1.6 303,199 - MPMX19_05592 0.24 -1.0 303,199 - MPMX19_05592 0.24 -1.3 303,199 - MPMX19_05592 0.24 -1.3 303,199 - MPMX19_05592 0.24 -0.9 303,199 - MPMX19_05592 0.24 +0.1 303,199 - MPMX19_05592 0.24 -0.0 303,199 - MPMX19_05592 0.24 +0.0 303,199 - MPMX19_05592 0.24 +0.3 303,199 - MPMX19_05592 0.24 -0.5 303,199 - MPMX19_05592 0.24 +0.4 303,199 - MPMX19_05592 0.24 +0.9 303,199 - MPMX19_05592 0.24 -0.5 303,199 - MPMX19_05592 0.24 -0.3 303,199 - MPMX19_05592 0.24 -2.6 303,199 - MPMX19_05592 0.24 +0.3
Or see this region's nucleotide sequence