Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05234 and MPMX19_05235 are separated by 2 nucleotides MPMX19_05235 and MPMX19_05236 are separated by 190 nucleotides MPMX19_05236 and MPMX19_05237 are separated by 258 nucleotides
MPMX19_05234: MPMX19_05234 - Glycine betaine/choline transport system permease protein OusW, at 760,723 to 761,649
_05234
MPMX19_05235: MPMX19_05235 - HTH-type transcriptional regulator BetI, at 761,652 to 762,227
_05235
MPMX19_05236: MPMX19_05236 - hypothetical protein, at 762,418 to 763,392
_05236
MPMX19_05237: MPMX19_05237 - Sensor histidine kinase RcsC, at 763,651 to 766,338
_05237
Position (kb) 762
763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 761.534 kb on + strand, within MPMX19_05234 at 761.534 kb on + strand, within MPMX19_05234 at 761.534 kb on + strand, within MPMX19_05234 at 761.534 kb on + strand, within MPMX19_05234 at 761.534 kb on + strand, within MPMX19_05234 at 761.535 kb on - strand, within MPMX19_05234 at 761.535 kb on - strand, within MPMX19_05234 at 761.535 kb on - strand, within MPMX19_05234 at 761.535 kb on - strand, within MPMX19_05234 at 761.677 kb on + strand at 761.677 kb on + strand at 761.677 kb on + strand at 761.677 kb on + strand at 761.677 kb on + strand at 761.678 kb on - strand at 761.678 kb on - strand at 762.082 kb on + strand, within MPMX19_05235 at 762.082 kb on + strand, within MPMX19_05235 at 762.082 kb on + strand, within MPMX19_05235 at 762.082 kb on + strand, within MPMX19_05235 at 762.082 kb on + strand, within MPMX19_05235 at 762.083 kb on - strand, within MPMX19_05235 at 762.083 kb on - strand, within MPMX19_05235 at 762.083 kb on - strand, within MPMX19_05235 at 762.083 kb on - strand, within MPMX19_05235 at 762.083 kb on - strand, within MPMX19_05235 at 762.083 kb on - strand, within MPMX19_05235 at 762.286 kb on + strand at 762.417 kb on + strand at 762.417 kb on + strand at 762.418 kb on - strand at 762.418 kb on - strand at 762.418 kb on - strand at 762.418 kb on - strand at 762.418 kb on - strand at 762.418 kb on - strand at 762.418 kb on - strand at 762.607 kb on + strand, within MPMX19_05236 at 762.607 kb on + strand, within MPMX19_05236 at 762.608 kb on - strand, within MPMX19_05236 at 762.608 kb on - strand, within MPMX19_05236 at 762.624 kb on - strand, within MPMX19_05236 at 762.646 kb on + strand, within MPMX19_05236 at 762.646 kb on + strand, within MPMX19_05236 at 762.646 kb on + strand, within MPMX19_05236 at 762.646 kb on + strand, within MPMX19_05236 at 762.647 kb on - strand, within MPMX19_05236 at 762.647 kb on - strand, within MPMX19_05236 at 762.647 kb on - strand, within MPMX19_05236 at 762.647 kb on - strand, within MPMX19_05236 at 762.647 kb on - strand, within MPMX19_05236 at 762.648 kb on + strand, within MPMX19_05236 at 762.648 kb on + strand, within MPMX19_05236 at 762.648 kb on + strand, within MPMX19_05236 at 762.648 kb on + strand, within MPMX19_05236 at 762.649 kb on - strand, within MPMX19_05236 at 762.649 kb on - strand, within MPMX19_05236 at 762.649 kb on - strand, within MPMX19_05236 at 762.649 kb on - strand, within MPMX19_05236 at 762.649 kb on - strand, within MPMX19_05236 at 762.778 kb on + strand, within MPMX19_05236 at 762.779 kb on - strand, within MPMX19_05236 at 762.799 kb on + strand, within MPMX19_05236 at 762.800 kb on - strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.150 kb on + strand, within MPMX19_05236 at 763.151 kb on - strand, within MPMX19_05236 at 763.151 kb on - strand, within MPMX19_05236 at 763.390 kb on + strand at 763.405 kb on + strand at 763.420 kb on + strand at 763.494 kb on + strand at 763.523 kb on + strand at 763.523 kb on + strand at 763.523 kb on + strand at 763.524 kb on - strand at 763.524 kb on - strand at 763.524 kb on - strand at 763.524 kb on - strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.610 kb on + strand at 763.610 kb on + strand at 763.757 kb on - strand at 763.786 kb on + strand at 763.787 kb on - strand at 763.825 kb on + strand at 763.825 kb on + strand at 763.825 kb on + strand at 763.825 kb on + strand at 763.826 kb on - strand at 763.826 kb on - strand at 763.826 kb on - strand at 763.826 kb on - strand at 763.826 kb on - strand at 763.826 kb on - strand at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.982 kb on - strand, within MPMX19_05237 at 763.982 kb on - strand, within MPMX19_05237 at 763.982 kb on - strand, within MPMX19_05237 at 763.982 kb on - strand, within MPMX19_05237 at 763.982 kb on - strand, within MPMX19_05237
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 761,534 + MPMX19_05234 0.87 +0.5 761,534 + MPMX19_05234 0.87 -0.6 761,534 + MPMX19_05234 0.87 -0.3 761,534 + MPMX19_05234 0.87 +0.1 761,534 + MPMX19_05234 0.87 +0.4 761,535 - MPMX19_05234 0.88 +0.5 761,535 - MPMX19_05234 0.88 -0.4 761,535 - MPMX19_05234 0.88 -1.1 761,535 - MPMX19_05234 0.88 -1.7 761,677 + -0.2 761,677 + -0.3 761,677 + +0.8 761,677 + +0.5 761,677 + -0.1 761,678 - +1.2 761,678 - -0.7 762,082 + MPMX19_05235 0.75 -0.7 762,082 + MPMX19_05235 0.75 +0.2 762,082 + MPMX19_05235 0.75 -0.3 762,082 + MPMX19_05235 0.75 -1.1 762,082 + MPMX19_05235 0.75 -0.8 762,083 - MPMX19_05235 0.75 -1.7 762,083 - MPMX19_05235 0.75 -0.9 762,083 - MPMX19_05235 0.75 +1.1 762,083 - MPMX19_05235 0.75 -0.8 762,083 - MPMX19_05235 0.75 -0.3 762,083 - MPMX19_05235 0.75 -1.4 762,286 + -0.1 762,417 + -0.3 762,417 + -0.7 762,418 - -0.9 762,418 - -1.5 762,418 - +0.3 762,418 - -1.5 762,418 - -0.3 762,418 - -1.0 762,418 - +0.1 762,607 + MPMX19_05236 0.19 -0.3 762,607 + MPMX19_05236 0.19 +0.5 762,608 - MPMX19_05236 0.19 +1.3 762,608 - MPMX19_05236 0.19 +1.1 762,624 - MPMX19_05236 0.21 -1.2 762,646 + MPMX19_05236 0.23 -0.3 762,646 + MPMX19_05236 0.23 +1.1 762,646 + MPMX19_05236 0.23 +0.2 762,646 + MPMX19_05236 0.23 +0.7 762,647 - MPMX19_05236 0.23 -2.3 762,647 - MPMX19_05236 0.23 +0.7 762,647 - MPMX19_05236 0.23 -0.9 762,647 - MPMX19_05236 0.23 -0.0 762,647 - MPMX19_05236 0.23 +1.0 762,648 + MPMX19_05236 0.24 +0.3 762,648 + MPMX19_05236 0.24 -0.2 762,648 + MPMX19_05236 0.24 -1.1 762,648 + MPMX19_05236 0.24 +0.1 762,649 - MPMX19_05236 0.24 -0.7 762,649 - MPMX19_05236 0.24 +0.4 762,649 - MPMX19_05236 0.24 -1.1 762,649 - MPMX19_05236 0.24 -0.2 762,649 - MPMX19_05236 0.24 -1.7 762,778 + MPMX19_05236 0.37 +1.7 762,779 - MPMX19_05236 0.37 -0.1 762,799 + MPMX19_05236 0.39 +0.4 762,800 - MPMX19_05236 0.39 -0.0 762,871 + MPMX19_05236 0.46 +0.7 762,871 + MPMX19_05236 0.46 -1.5 762,871 + MPMX19_05236 0.46 +0.3 762,871 + MPMX19_05236 0.46 +0.4 762,871 + MPMX19_05236 0.46 -2.4 762,871 + MPMX19_05236 0.46 -0.1 762,871 + MPMX19_05236 0.46 -1.5 762,871 + MPMX19_05236 0.46 +0.3 762,871 + MPMX19_05236 0.46 +1.0 762,871 + MPMX19_05236 0.46 +0.3 762,872 - MPMX19_05236 0.47 -0.2 762,872 - MPMX19_05236 0.47 +0.2 762,872 - MPMX19_05236 0.47 -1.7 762,872 - MPMX19_05236 0.47 -0.1 762,872 - MPMX19_05236 0.47 -0.1 762,872 - MPMX19_05236 0.47 -1.1 763,075 + MPMX19_05236 0.67 -0.4 763,075 + MPMX19_05236 0.67 -1.1 763,075 + MPMX19_05236 0.67 -0.2 763,075 + MPMX19_05236 0.67 -1.5 763,075 + MPMX19_05236 0.67 -0.5 763,075 + MPMX19_05236 0.67 -1.0 763,075 + MPMX19_05236 0.67 -1.2 763,075 + MPMX19_05236 0.67 +0.2 763,075 + MPMX19_05236 0.67 -1.3 763,075 + MPMX19_05236 0.67 -0.3 763,075 + MPMX19_05236 0.67 +0.1 763,075 + MPMX19_05236 0.67 -0.8 763,076 - MPMX19_05236 0.67 -0.7 763,076 - MPMX19_05236 0.67 +0.7 763,076 - MPMX19_05236 0.67 -0.1 763,076 - MPMX19_05236 0.67 +0.2 763,076 - MPMX19_05236 0.67 +0.7 763,076 - MPMX19_05236 0.67 -1.1 763,076 - MPMX19_05236 0.67 -0.9 763,076 - MPMX19_05236 0.67 -1.1 763,150 + MPMX19_05236 0.75 -1.0 763,151 - MPMX19_05236 0.75 +0.7 763,151 - MPMX19_05236 0.75 -0.5 763,390 + -1.9 763,405 + +0.5 763,420 + -0.0 763,494 + +0.8 763,523 + -1.9 763,523 + +0.3 763,523 + -1.0 763,524 - -1.3 763,524 - -2.0 763,524 - -0.6 763,524 - -0.8 763,533 + +1.1 763,533 + -0.4 763,533 + -1.7 763,533 + -0.5 763,533 + -0.6 763,533 + -0.8 763,533 + -0.5 763,534 - -0.3 763,534 - -0.5 763,534 - -0.3 763,534 - -1.0 763,534 - -0.3 763,534 - +0.3 763,534 - +0.9 763,610 + -1.2 763,610 + -1.0 763,757 - -0.1 763,786 + +0.9 763,787 - -1.1 763,825 + -0.5 763,825 + -0.5 763,825 + -0.6 763,825 + +0.3 763,826 - -0.8 763,826 - -0.2 763,826 - -3.1 763,826 - +0.4 763,826 - -2.2 763,826 - -0.5 763,981 + MPMX19_05237 0.12 +0.1 763,981 + MPMX19_05237 0.12 -0.7 763,981 + MPMX19_05237 0.12 +0.7 763,981 + MPMX19_05237 0.12 +1.7 763,981 + MPMX19_05237 0.12 -0.9 763,981 + MPMX19_05237 0.12 +0.1 763,981 + MPMX19_05237 0.12 -0.7 763,981 + MPMX19_05237 0.12 -1.0 763,982 - MPMX19_05237 0.12 -0.2 763,982 - MPMX19_05237 0.12 -1.2 763,982 - MPMX19_05237 0.12 +0.2 763,982 - MPMX19_05237 0.12 +0.3 763,982 - MPMX19_05237 0.12 -1.7
Or see this region's nucleotide sequence