Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05213

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05212 and MPMX19_05213 are separated by 16 nucleotidesMPMX19_05213 and MPMX19_05214 overlap by 11 nucleotidesMPMX19_05214 and MPMX19_05215 overlap by 26 nucleotides MPMX19_05212: MPMX19_05212 - Beta-barrel assembly-enhancing protease, at 737,709 to 740,018 _05212 MPMX19_05213: MPMX19_05213 - hypothetical protein, at 740,035 to 740,313 _05213 MPMX19_05214: MPMX19_05214 - ECF RNA polymerase sigma factor SigE, at 740,303 to 740,983 _05214 MPMX19_05215: MPMX19_05215 - hypothetical protein, at 740,958 to 741,437 _05215 Position (kb) 740 741Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 739.125 kb on + strand, within MPMX19_05212at 739.125 kb on + strand, within MPMX19_05212at 739.126 kb on - strand, within MPMX19_05212at 739.419 kb on + strand, within MPMX19_05212at 739.419 kb on + strand, within MPMX19_05212at 739.419 kb on + strand, within MPMX19_05212at 739.419 kb on + strand, within MPMX19_05212at 739.419 kb on + strand, within MPMX19_05212at 739.419 kb on + strand, within MPMX19_05212at 739.420 kb on - strand, within MPMX19_05212at 739.420 kb on - strand, within MPMX19_05212at 739.420 kb on - strand, within MPMX19_05212at 739.420 kb on - strand, within MPMX19_05212at 739.614 kb on + strand, within MPMX19_05212at 739.614 kb on + strand, within MPMX19_05212at 739.680 kb on + strand, within MPMX19_05212at 739.680 kb on + strand, within MPMX19_05212at 739.680 kb on + strand, within MPMX19_05212at 739.680 kb on + strand, within MPMX19_05212at 739.680 kb on + strand, within MPMX19_05212at 739.680 kb on + strand, within MPMX19_05212at 739.681 kb on - strand, within MPMX19_05212at 739.681 kb on - strand, within MPMX19_05212at 739.681 kb on - strand, within MPMX19_05212at 739.737 kb on + strand, within MPMX19_05212at 739.737 kb on + strand, within MPMX19_05212at 739.737 kb on + strand, within MPMX19_05212at 739.737 kb on + strand, within MPMX19_05212at 739.738 kb on - strand, within MPMX19_05212at 739.738 kb on - strand, within MPMX19_05212at 739.738 kb on - strand, within MPMX19_05212at 739.738 kb on - strand, within MPMX19_05212at 739.738 kb on - strand, within MPMX19_05212at 739.738 kb on - strand, within MPMX19_05212at 739.738 kb on - strand, within MPMX19_05212at 740.023 kb on + strandat 740.023 kb on + strandat 740.023 kb on + strandat 740.023 kb on + strandat 740.024 kb on - strandat 740.024 kb on - strandat 740.024 kb on - strandat 740.024 kb on - strandat 740.024 kb on - strandat 740.024 kb on - strandat 740.025 kb on + strandat 740.025 kb on + strandat 740.026 kb on - strandat 740.026 kb on - strandat 740.026 kb on - strandat 740.026 kb on - strandat 740.026 kb on - strandat 740.036 kb on + strandat 740.036 kb on + strandat 740.036 kb on + strandat 740.037 kb on - strandat 740.393 kb on + strand, within MPMX19_05214at 740.393 kb on + strand, within MPMX19_05214at 740.394 kb on - strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.441 kb on + strand, within MPMX19_05214at 740.441 kb on + strand, within MPMX19_05214at 740.441 kb on + strand, within MPMX19_05214at 740.455 kb on - strand, within MPMX19_05214at 740.455 kb on - strand, within MPMX19_05214at 740.646 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.814 kb on + strand, within MPMX19_05214at 740.815 kb on - strand, within MPMX19_05214at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.182 kb on - strand, within MPMX19_05215

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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739,125 + MPMX19_05212 0.61 -0.1
739,125 + MPMX19_05212 0.61 -0.0
739,126 - MPMX19_05212 0.61 -0.5
739,419 + MPMX19_05212 0.74 +0.9
739,419 + MPMX19_05212 0.74 -2.6
739,419 + MPMX19_05212 0.74 +0.1
739,419 + MPMX19_05212 0.74 +1.2
739,419 + MPMX19_05212 0.74 -0.9
739,419 + MPMX19_05212 0.74 +0.2
739,420 - MPMX19_05212 0.74 -0.1
739,420 - MPMX19_05212 0.74 -0.3
739,420 - MPMX19_05212 0.74 +0.4
739,420 - MPMX19_05212 0.74 -1.3
739,614 + MPMX19_05212 0.82 -0.8
739,614 + MPMX19_05212 0.82 -1.6
739,680 + MPMX19_05212 0.85 -0.1
739,680 + MPMX19_05212 0.85 +0.1
739,680 + MPMX19_05212 0.85 +1.2
739,680 + MPMX19_05212 0.85 +0.1
739,680 + MPMX19_05212 0.85 -0.1
739,680 + MPMX19_05212 0.85 -0.1
739,681 - MPMX19_05212 0.85 -1.1
739,681 - MPMX19_05212 0.85 -0.2
739,681 - MPMX19_05212 0.85 +0.7
739,737 + MPMX19_05212 0.88 -0.2
739,737 + MPMX19_05212 0.88 -0.1
739,737 + MPMX19_05212 0.88 -0.7
739,737 + MPMX19_05212 0.88 -1.1
739,738 - MPMX19_05212 0.88 -1.0
739,738 - MPMX19_05212 0.88 -1.1
739,738 - MPMX19_05212 0.88 -1.0
739,738 - MPMX19_05212 0.88 -0.9
739,738 - MPMX19_05212 0.88 -0.3
739,738 - MPMX19_05212 0.88 -0.0
739,738 - MPMX19_05212 0.88 -1.3
740,023 + -0.8
740,023 + -0.0
740,023 + +1.7
740,023 + -0.1
740,024 - -0.1
740,024 - -0.8
740,024 - +0.4
740,024 - -1.6
740,024 - +1.2
740,024 - +0.5
740,025 + -0.8
740,025 + -1.1
740,026 - -0.4
740,026 - -0.0
740,026 - -0.9
740,026 - -2.9
740,026 - -0.9
740,036 + -1.5
740,036 + -0.8
740,036 + -2.5
740,037 - +0.5
740,393 + MPMX19_05214 0.13 -1.9
740,393 + MPMX19_05214 0.13 -0.1
740,394 - MPMX19_05214 0.13 -0.3
740,402 + MPMX19_05214 0.15 -0.7
740,402 + MPMX19_05214 0.15 -0.8
740,402 + MPMX19_05214 0.15 -1.1
740,402 + MPMX19_05214 0.15 -0.1
740,402 + MPMX19_05214 0.15 +1.2
740,402 + MPMX19_05214 0.15 -1.1
740,402 + MPMX19_05214 0.15 -0.3
740,402 + MPMX19_05214 0.15 -1.4
740,402 + MPMX19_05214 0.15 -0.2
740,403 - MPMX19_05214 0.15 -0.8
740,403 - MPMX19_05214 0.15 -0.6
740,403 - MPMX19_05214 0.15 -0.1
740,403 - MPMX19_05214 0.15 -0.3
740,403 - MPMX19_05214 0.15 -1.5
740,403 - MPMX19_05214 0.15 -1.5
740,403 - MPMX19_05214 0.15 -1.7
740,403 - MPMX19_05214 0.15 -1.1
740,403 - MPMX19_05214 0.15 +0.9
740,403 - MPMX19_05214 0.15 +0.1
740,403 - MPMX19_05214 0.15 -0.4
740,403 - MPMX19_05214 0.15 -1.3
740,441 + MPMX19_05214 0.20 -0.8
740,441 + MPMX19_05214 0.20 -0.3
740,441 + MPMX19_05214 0.20 +0.9
740,455 - MPMX19_05214 0.22 -2.7
740,455 - MPMX19_05214 0.22 -0.7
740,646 + MPMX19_05214 0.50 -0.4
740,778 + MPMX19_05214 0.70 -0.5
740,778 + MPMX19_05214 0.70 -1.3
740,778 + MPMX19_05214 0.70 -1.8
740,778 + MPMX19_05214 0.70 +0.2
740,778 + MPMX19_05214 0.70 +0.9
740,778 + MPMX19_05214 0.70 -0.7
740,779 - MPMX19_05214 0.70 +0.5
740,779 - MPMX19_05214 0.70 +2.1
740,779 - MPMX19_05214 0.70 +0.1
740,779 - MPMX19_05214 0.70 +0.5
740,779 - MPMX19_05214 0.70 +0.2
740,779 - MPMX19_05214 0.70 -0.2
740,779 - MPMX19_05214 0.70 +0.1
740,779 - MPMX19_05214 0.70 -1.1
740,779 - MPMX19_05214 0.70 +0.7
740,814 + MPMX19_05214 0.75 +0.3
740,815 - MPMX19_05214 0.75 +0.3
741,181 + MPMX19_05215 0.46 -1.1
741,181 + MPMX19_05215 0.46 -0.8
741,181 + MPMX19_05215 0.46 +1.4
741,181 + MPMX19_05215 0.46 +0.6
741,181 + MPMX19_05215 0.46 -0.6
741,182 - MPMX19_05215 0.47 -0.5

Or see this region's nucleotide sequence