Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05095

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05093 and MPMX19_05094 are separated by 205 nucleotidesMPMX19_05094 and MPMX19_05095 overlap by 20 nucleotidesMPMX19_05095 and MPMX19_05096 are separated by 55 nucleotidesMPMX19_05096 and MPMX19_05097 overlap by 1 nucleotides MPMX19_05093: MPMX19_05093 - Biotin transport ATP-binding protein BioM, at 582,266 to 582,940 _05093 MPMX19_05094: MPMX19_05094 - Antitoxin YefM, at 583,146 to 583,412 _05094 MPMX19_05095: MPMX19_05095 - Toxin YoeB, at 583,393 to 583,659 _05095 MPMX19_05096: MPMX19_05096 - L-cystine import ATP-binding protein TcyC, at 583,715 to 584,542 _05096 MPMX19_05097: MPMX19_05097 - L-cystine transport system permease protein YecS, at 584,542 to 585,246 _05097 Position (kb) 583 584Strain fitness (log2 ratio) -2 -1 0 1at 583.023 kb on + strandat 583.053 kb on + strandat 583.053 kb on + strandat 583.053 kb on + strandat 583.054 kb on - strandat 583.070 kb on - strandat 583.070 kb on - strandat 583.073 kb on + strandat 583.073 kb on + strandat 583.074 kb on - strandat 583.098 kb on + strandat 583.099 kb on - strandat 583.099 kb on - strandat 583.173 kb on - strand, within MPMX19_05094at 583.173 kb on - strand, within MPMX19_05094at 583.173 kb on - strand, within MPMX19_05094at 583.429 kb on + strand, within MPMX19_05095at 583.430 kb on - strand, within MPMX19_05095at 583.430 kb on - strand, within MPMX19_05095at 583.433 kb on + strand, within MPMX19_05095at 583.433 kb on + strand, within MPMX19_05095at 583.434 kb on - strand, within MPMX19_05095at 583.434 kb on - strand, within MPMX19_05095at 583.500 kb on + strand, within MPMX19_05095at 583.501 kb on - strand, within MPMX19_05095at 583.501 kb on - strand, within MPMX19_05095at 583.594 kb on + strand, within MPMX19_05095at 583.595 kb on - strand, within MPMX19_05095at 583.634 kb on + strandat 583.634 kb on + strandat 583.634 kb on + strandat 583.648 kb on + strandat 583.654 kb on + strandat 583.655 kb on - strandat 583.655 kb on - strandat 583.655 kb on - strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 584.055 kb on + strand, within MPMX19_05096at 584.055 kb on + strand, within MPMX19_05096at 584.056 kb on - strand, within MPMX19_05096at 584.056 kb on - strand, within MPMX19_05096at 584.278 kb on + strand, within MPMX19_05096at 584.278 kb on + strand, within MPMX19_05096at 584.278 kb on + strand, within MPMX19_05096at 584.278 kb on + strand, within MPMX19_05096at 584.279 kb on - strand, within MPMX19_05096at 584.279 kb on - strand, within MPMX19_05096at 584.279 kb on - strand, within MPMX19_05096at 584.281 kb on - strand, within MPMX19_05096at 584.281 kb on - strand, within MPMX19_05096at 584.281 kb on - strand, within MPMX19_05096at 584.322 kb on + strand, within MPMX19_05096at 584.322 kb on + strand, within MPMX19_05096at 584.323 kb on - strand, within MPMX19_05096

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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583,023 + -0.9
583,053 + +0.1
583,053 + -0.3
583,053 + -1.6
583,054 - -0.1
583,070 - -1.5
583,070 - +0.4
583,073 + +0.1
583,073 + -1.1
583,074 - +0.5
583,098 + -0.5
583,099 - +0.2
583,099 - -0.1
583,173 - MPMX19_05094 0.10 -1.6
583,173 - MPMX19_05094 0.10 -0.6
583,173 - MPMX19_05094 0.10 -2.0
583,429 + MPMX19_05095 0.13 -0.9
583,430 - MPMX19_05095 0.14 -0.6
583,430 - MPMX19_05095 0.14 -0.5
583,433 + MPMX19_05095 0.15 -0.8
583,433 + MPMX19_05095 0.15 -0.9
583,434 - MPMX19_05095 0.15 +0.0
583,434 - MPMX19_05095 0.15 -0.6
583,500 + MPMX19_05095 0.40 -1.0
583,501 - MPMX19_05095 0.40 -0.3
583,501 - MPMX19_05095 0.40 -0.3
583,594 + MPMX19_05095 0.75 -1.0
583,595 - MPMX19_05095 0.76 -0.4
583,634 + -0.4
583,634 + -0.4
583,634 + +0.5
583,648 + -1.0
583,654 + -1.1
583,655 - -0.9
583,655 - -0.4
583,655 - +0.1
583,737 + +0.7
583,737 + +0.3
583,737 + -0.9
583,737 + -0.4
583,737 + -0.7
583,737 + -0.6
583,737 + +0.4
583,738 - +0.0
583,738 - +0.3
583,738 - -0.0
583,738 - +0.1
583,738 - +0.4
583,738 - -1.5
583,738 - -1.1
583,738 - +0.4
584,055 + MPMX19_05096 0.41 -1.1
584,055 + MPMX19_05096 0.41 +0.9
584,056 - MPMX19_05096 0.41 +0.4
584,056 - MPMX19_05096 0.41 -0.9
584,278 + MPMX19_05096 0.68 +0.5
584,278 + MPMX19_05096 0.68 +0.4
584,278 + MPMX19_05096 0.68 +0.9
584,278 + MPMX19_05096 0.68 -0.4
584,279 - MPMX19_05096 0.68 -2.7
584,279 - MPMX19_05096 0.68 -0.6
584,279 - MPMX19_05096 0.68 -0.0
584,281 - MPMX19_05096 0.68 -0.3
584,281 - MPMX19_05096 0.68 +0.7
584,281 - MPMX19_05096 0.68 +0.1
584,322 + MPMX19_05096 0.73 +0.8
584,322 + MPMX19_05096 0.73 +1.2
584,323 - MPMX19_05096 0.73 +0.9

Or see this region's nucleotide sequence