Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04554 and MPMX19_04555 are separated by 410 nucleotides MPMX19_04555 and MPMX19_04556 are separated by 63 nucleotides MPMX19_04556 and MPMX19_04557 are separated by 546 nucleotides
MPMX19_04554: MPMX19_04554 - Response regulator PleD, at 930,655 to 931,371
_04554
MPMX19_04555: MPMX19_04555 - Sensor histidine kinase RcsC, at 931,782 to 935,606
_04555
MPMX19_04556: MPMX19_04556 - hypothetical protein, at 935,670 to 935,873
_04556
MPMX19_04557: MPMX19_04557 - Na(+)/H(+) antiporter NhaA, at 936,420 to 937,625
_04557
Position (kb) 931
932
933
934
935
936 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 930.860 kb on + strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.932 kb on - strand, within MPMX19_04554 at 930.996 kb on + strand, within MPMX19_04554 at 930.996 kb on + strand, within MPMX19_04554 at 930.996 kb on + strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 931.310 kb on + strand at 931.310 kb on + strand at 931.310 kb on + strand at 931.503 kb on + strand at 931.504 kb on - strand at 931.530 kb on + strand at 931.530 kb on + strand at 931.530 kb on + strand at 931.530 kb on + strand at 931.531 kb on - strand at 931.531 kb on - strand at 931.532 kb on + strand at 931.532 kb on + strand at 931.532 kb on + strand at 931.533 kb on - strand at 931.533 kb on - strand at 931.533 kb on - strand at 931.570 kb on + strand at 931.570 kb on + strand at 931.570 kb on + strand at 931.573 kb on + strand at 931.573 kb on + strand at 931.573 kb on + strand at 931.574 kb on - strand at 931.675 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.901 kb on - strand at 931.901 kb on - strand at 931.901 kb on - strand at 931.901 kb on - strand at 931.901 kb on - strand at 931.901 kb on - strand at 932.293 kb on + strand, within MPMX19_04555 at 932.294 kb on - strand, within MPMX19_04555 at 932.294 kb on - strand, within MPMX19_04555 at 932.759 kb on + strand, within MPMX19_04555 at 932.760 kb on - strand, within MPMX19_04555 at 933.406 kb on + strand, within MPMX19_04555 at 933.406 kb on + strand, within MPMX19_04555 at 933.406 kb on + strand, within MPMX19_04555 at 933.406 kb on + strand, within MPMX19_04555 at 933.407 kb on - strand, within MPMX19_04555 at 933.407 kb on - strand, within MPMX19_04555 at 933.661 kb on + strand, within MPMX19_04555 at 933.661 kb on + strand, within MPMX19_04555 at 933.661 kb on + strand, within MPMX19_04555 at 933.661 kb on + strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 934.157 kb on + strand, within MPMX19_04555 at 934.158 kb on - strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.176 kb on + strand, within MPMX19_04555 at 934.176 kb on + strand, within MPMX19_04555 at 934.177 kb on - strand, within MPMX19_04555 at 934.256 kb on - strand, within MPMX19_04555 at 934.615 kb on + strand, within MPMX19_04555 at 934.616 kb on - strand, within MPMX19_04555 at 934.616 kb on - strand, within MPMX19_04555 at 934.616 kb on - strand, within MPMX19_04555 at 934.616 kb on - strand, within MPMX19_04555 at 934.616 kb on - strand, within MPMX19_04555 at 934.646 kb on + strand, within MPMX19_04555 at 934.647 kb on - strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.993 kb on + strand, within MPMX19_04555 at 934.993 kb on + strand, within MPMX19_04555 at 934.993 kb on + strand, within MPMX19_04555 at 934.993 kb on + strand, within MPMX19_04555 at 934.993 kb on + strand, within MPMX19_04555 at 934.994 kb on - strand, within MPMX19_04555 at 934.994 kb on - strand, within MPMX19_04555 at 934.994 kb on - strand, within MPMX19_04555 at 934.994 kb on - strand, within MPMX19_04555 at 935.203 kb on + strand, within MPMX19_04555 at 935.203 kb on + strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.209 kb on + strand, within MPMX19_04555 at 935.209 kb on + strand, within MPMX19_04555 at 935.209 kb on + strand, within MPMX19_04555 at 935.210 kb on - strand, within MPMX19_04555 at 935.210 kb on - strand, within MPMX19_04555 at 935.212 kb on + strand, within MPMX19_04555 at 935.212 kb on + strand, within MPMX19_04555 at 935.213 kb on - strand, within MPMX19_04555 at 935.213 kb on - strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.233 kb on + strand at 935.233 kb on + strand at 935.410 kb on + strand at 935.410 kb on + strand at 935.410 kb on + strand at 935.410 kb on + strand at 935.411 kb on - strand at 935.411 kb on - strand at 935.411 kb on - strand at 935.411 kb on - strand at 935.437 kb on + strand at 935.437 kb on + strand at 935.438 kb on - strand at 935.642 kb on + strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.791 kb on + strand, within MPMX19_04556 at 935.889 kb on + strand at 935.889 kb on + strand at 935.890 kb on - strand at 935.924 kb on - strand at 935.982 kb on + strand at 935.983 kb on - strand at 936.026 kb on + strand at 936.034 kb on + strand at 936.035 kb on - strand at 936.035 kb on - strand at 936.331 kb on + strand at 936.331 kb on + strand at 936.331 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on - strand at 936.334 kb on - strand at 936.334 kb on - strand at 936.334 kb on - strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.386 kb on - strand at 936.419 kb on + strand at 936.420 kb on - strand at 936.564 kb on + strand, within MPMX19_04557 at 936.564 kb on + strand, within MPMX19_04557 at 936.565 kb on - strand, within MPMX19_04557 at 936.565 kb on - strand, within MPMX19_04557 at 936.585 kb on + strand, within MPMX19_04557 at 936.585 kb on + strand, within MPMX19_04557
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 930,860 + MPMX19_04554 0.29 +0.4 930,861 - MPMX19_04554 0.29 +1.2 930,861 - MPMX19_04554 0.29 -1.9 930,861 - MPMX19_04554 0.29 +0.4 930,861 - MPMX19_04554 0.29 -0.5 930,932 - MPMX19_04554 0.39 -0.2 930,996 + MPMX19_04554 0.48 +0.6 930,996 + MPMX19_04554 0.48 -0.0 930,996 + MPMX19_04554 0.48 -0.3 930,997 - MPMX19_04554 0.48 -0.4 930,997 - MPMX19_04554 0.48 -2.1 930,997 - MPMX19_04554 0.48 -1.0 930,997 - MPMX19_04554 0.48 -0.4 930,997 - MPMX19_04554 0.48 +1.6 930,997 - MPMX19_04554 0.48 -0.0 931,310 + -0.7 931,310 + -1.1 931,310 + +0.6 931,503 + -0.7 931,504 - +0.5 931,530 + -0.2 931,530 + -0.0 931,530 + -2.1 931,530 + -0.7 931,531 - +0.6 931,531 - -1.4 931,532 + +0.7 931,532 + -0.7 931,532 + -0.1 931,533 - -1.5 931,533 - +0.4 931,533 - -1.0 931,570 + +0.9 931,570 + -0.4 931,570 + -1.6 931,573 + +0.2 931,573 + -0.7 931,573 + -0.7 931,574 - -0.4 931,675 + -1.0 931,900 + -0.3 931,900 + +0.5 931,900 + -0.4 931,900 + -1.9 931,900 + +0.2 931,900 + -0.4 931,900 + -0.0 931,900 + -1.4 931,900 + -0.7 931,901 - +0.6 931,901 - -0.4 931,901 - -1.7 931,901 - +1.6 931,901 - -0.2 931,901 - -0.2 932,293 + MPMX19_04555 0.13 -0.4 932,294 - MPMX19_04555 0.13 +0.8 932,294 - MPMX19_04555 0.13 -0.4 932,759 + MPMX19_04555 0.26 -0.9 932,760 - MPMX19_04555 0.26 -0.7 933,406 + MPMX19_04555 0.42 -1.3 933,406 + MPMX19_04555 0.42 -1.2 933,406 + MPMX19_04555 0.42 -0.0 933,406 + MPMX19_04555 0.42 -0.8 933,407 - MPMX19_04555 0.42 -0.5 933,407 - MPMX19_04555 0.42 +0.2 933,661 + MPMX19_04555 0.49 -2.8 933,661 + MPMX19_04555 0.49 +0.6 933,661 + MPMX19_04555 0.49 -1.2 933,661 + MPMX19_04555 0.49 -0.6 933,662 - MPMX19_04555 0.49 -1.1 933,662 - MPMX19_04555 0.49 -0.5 933,662 - MPMX19_04555 0.49 +0.8 933,662 - MPMX19_04555 0.49 -1.7 933,662 - MPMX19_04555 0.49 -0.9 933,662 - MPMX19_04555 0.49 -0.9 933,662 - MPMX19_04555 0.49 +0.8 933,662 - MPMX19_04555 0.49 -0.0 933,662 - MPMX19_04555 0.49 -2.3 933,662 - MPMX19_04555 0.49 -2.9 934,157 + MPMX19_04555 0.62 +0.2 934,158 - MPMX19_04555 0.62 -1.0 934,159 + MPMX19_04555 0.62 -0.2 934,159 + MPMX19_04555 0.62 -1.1 934,159 + MPMX19_04555 0.62 -0.5 934,159 + MPMX19_04555 0.62 -1.0 934,159 + MPMX19_04555 0.62 -0.6 934,159 + MPMX19_04555 0.62 -0.7 934,159 + MPMX19_04555 0.62 -0.8 934,159 + MPMX19_04555 0.62 +0.4 934,159 + MPMX19_04555 0.62 -1.0 934,159 + MPMX19_04555 0.62 -0.9 934,160 - MPMX19_04555 0.62 -0.7 934,160 - MPMX19_04555 0.62 +0.7 934,160 - MPMX19_04555 0.62 -1.6 934,160 - MPMX19_04555 0.62 -0.5 934,160 - MPMX19_04555 0.62 +0.3 934,160 - MPMX19_04555 0.62 +0.8 934,160 - MPMX19_04555 0.62 -0.4 934,160 - MPMX19_04555 0.62 -1.2 934,160 - MPMX19_04555 0.62 -1.0 934,176 + MPMX19_04555 0.63 -0.8 934,176 + MPMX19_04555 0.63 -1.0 934,177 - MPMX19_04555 0.63 -0.4 934,256 - MPMX19_04555 0.65 +0.4 934,615 + MPMX19_04555 0.74 +0.6 934,616 - MPMX19_04555 0.74 -0.2 934,616 - MPMX19_04555 0.74 -1.0 934,616 - MPMX19_04555 0.74 -0.7 934,616 - MPMX19_04555 0.74 -0.7 934,616 - MPMX19_04555 0.74 -0.3 934,646 + MPMX19_04555 0.75 -2.7 934,647 - MPMX19_04555 0.75 -0.0 934,678 + MPMX19_04555 0.76 -0.0 934,678 + MPMX19_04555 0.76 -1.2 934,678 + MPMX19_04555 0.76 -0.0 934,678 + MPMX19_04555 0.76 -1.2 934,678 + MPMX19_04555 0.76 +0.6 934,678 + MPMX19_04555 0.76 +0.8 934,678 + MPMX19_04555 0.76 +0.3 934,678 + MPMX19_04555 0.76 -0.3 934,679 - MPMX19_04555 0.76 +0.2 934,679 - MPMX19_04555 0.76 +0.6 934,679 - MPMX19_04555 0.76 -0.7 934,679 - MPMX19_04555 0.76 +0.1 934,679 - MPMX19_04555 0.76 -1.3 934,679 - MPMX19_04555 0.76 -1.8 934,679 - MPMX19_04555 0.76 -1.1 934,993 + MPMX19_04555 0.84 -0.0 934,993 + MPMX19_04555 0.84 -0.4 934,993 + MPMX19_04555 0.84 -2.3 934,993 + MPMX19_04555 0.84 +0.4 934,993 + MPMX19_04555 0.84 +0.3 934,994 - MPMX19_04555 0.84 -0.2 934,994 - MPMX19_04555 0.84 -0.5 934,994 - MPMX19_04555 0.84 +0.8 934,994 - MPMX19_04555 0.84 +0.8 935,203 + MPMX19_04555 0.89 -0.8 935,203 + MPMX19_04555 0.89 +0.4 935,204 - MPMX19_04555 0.89 -0.6 935,204 - MPMX19_04555 0.89 -1.5 935,204 - MPMX19_04555 0.89 -1.1 935,204 - MPMX19_04555 0.89 -0.3 935,204 - MPMX19_04555 0.89 -0.4 935,204 - MPMX19_04555 0.89 -0.3 935,204 - MPMX19_04555 0.89 +0.4 935,204 - MPMX19_04555 0.89 -1.0 935,204 - MPMX19_04555 0.89 -0.0 935,209 + MPMX19_04555 0.90 +0.3 935,209 + MPMX19_04555 0.90 -0.9 935,209 + MPMX19_04555 0.90 -0.1 935,210 - MPMX19_04555 0.90 -1.1 935,210 - MPMX19_04555 0.90 -0.3 935,212 + MPMX19_04555 0.90 -1.0 935,212 + MPMX19_04555 0.90 -1.1 935,213 - MPMX19_04555 0.90 -1.2 935,213 - MPMX19_04555 0.90 -0.3 935,218 + MPMX19_04555 0.90 -0.3 935,218 + MPMX19_04555 0.90 -0.0 935,218 + MPMX19_04555 0.90 +1.2 935,218 + MPMX19_04555 0.90 -0.4 935,218 + MPMX19_04555 0.90 +0.4 935,218 + MPMX19_04555 0.90 -0.0 935,218 + MPMX19_04555 0.90 +0.2 935,219 - MPMX19_04555 0.90 -0.0 935,219 - MPMX19_04555 0.90 -1.2 935,219 - MPMX19_04555 0.90 -1.7 935,219 - MPMX19_04555 0.90 +2.9 935,219 - MPMX19_04555 0.90 -0.2 935,219 - MPMX19_04555 0.90 -0.5 935,233 + +0.5 935,233 + +1.6 935,410 + +0.1 935,410 + -0.2 935,410 + +0.4 935,410 + +0.5 935,411 - +0.4 935,411 - +0.1 935,411 - -0.3 935,411 - +0.2 935,437 + +0.6 935,437 + -0.3 935,438 - -2.7 935,642 + -0.4 935,643 - -0.5 935,643 - +0.3 935,643 - +0.2 935,643 - +0.4 935,791 + MPMX19_04556 0.59 -0.2 935,889 + +0.3 935,889 + -0.2 935,890 - -0.5 935,924 - -0.3 935,982 + -0.4 935,983 - -2.4 936,026 + -1.7 936,034 + -0.3 936,035 - +0.4 936,035 - +0.1 936,331 + -0.2 936,331 + -1.1 936,331 + -2.1 936,333 + +0.6 936,333 + -0.5 936,333 + +0.4 936,333 + -1.0 936,333 + +0.6 936,333 + +0.3 936,333 + -0.0 936,333 - +1.0 936,334 - -1.1 936,334 - -1.0 936,334 - +0.5 936,335 + -1.2 936,335 + -0.7 936,335 + -0.4 936,335 + -1.0 936,335 + +1.2 936,335 + -0.1 936,336 - -0.3 936,336 - +0.4 936,336 - +0.8 936,336 - -0.8 936,336 - -0.9 936,386 - +0.1 936,419 + -0.8 936,420 - -0.6 936,564 + MPMX19_04557 0.12 +1.0 936,564 + MPMX19_04557 0.12 -1.5 936,565 - MPMX19_04557 0.12 +0.3 936,565 - MPMX19_04557 0.12 -1.2 936,585 + MPMX19_04557 0.14 -0.1 936,585 + MPMX19_04557 0.14 -1.2
Or see this region's nucleotide sequence