Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04519 and MPMX19_04520 are separated by 10 nucleotides MPMX19_04520 and MPMX19_04521 overlap by 4 nucleotides MPMX19_04521 and MPMX19_04522 overlap by 4 nucleotides MPMX19_04522 and MPMX19_04523 are separated by 60 nucleotides
MPMX19_04519: MPMX19_04519 - hypothetical protein, at 892,573 to 893,742
_04519
MPMX19_04520: MPMX19_04520 - hypothetical protein, at 893,753 to 894,184
_04520
MPMX19_04521: MPMX19_04521 - Bifunctional protein PaaZ, at 894,181 to 894,642
_04521
MPMX19_04522: MPMX19_04522 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 894,639 to 895,397
_04522
MPMX19_04523: MPMX19_04523 - hypothetical protein, at 895,458 to 896,513
_04523
Position (kb) 894
895
896 Strain fitness (log2 ratio) -2
-1
0
1
2 at 893.740 kb on + strand at 893.740 kb on + strand at 893.740 kb on + strand at 893.740 kb on + strand at 893.740 kb on + strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.876 kb on + strand, within MPMX19_04520 at 893.877 kb on - strand, within MPMX19_04520 at 893.877 kb on - strand, within MPMX19_04520 at 893.877 kb on - strand, within MPMX19_04520 at 893.885 kb on + strand, within MPMX19_04520 at 893.885 kb on + strand, within MPMX19_04520 at 893.886 kb on - strand, within MPMX19_04520 at 893.966 kb on + strand, within MPMX19_04520 at 893.967 kb on - strand, within MPMX19_04520 at 893.967 kb on - strand, within MPMX19_04520 at 893.967 kb on - strand, within MPMX19_04520 at 893.967 kb on - strand, within MPMX19_04520 at 894.005 kb on + strand, within MPMX19_04520 at 894.006 kb on - strand, within MPMX19_04520 at 894.006 kb on - strand, within MPMX19_04520 at 894.006 kb on - strand, within MPMX19_04520 at 894.006 kb on - strand, within MPMX19_04520 at 894.006 kb on - strand, within MPMX19_04520 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.307 kb on - strand, within MPMX19_04521 at 894.345 kb on + strand, within MPMX19_04521 at 894.345 kb on + strand, within MPMX19_04521 at 894.346 kb on - strand, within MPMX19_04521 at 894.481 kb on + strand, within MPMX19_04521 at 894.481 kb on + strand, within MPMX19_04521 at 894.482 kb on - strand, within MPMX19_04521 at 894.482 kb on - strand, within MPMX19_04521 at 894.482 kb on - strand, within MPMX19_04521 at 894.826 kb on + strand, within MPMX19_04522 at 894.826 kb on + strand, within MPMX19_04522 at 894.827 kb on - strand, within MPMX19_04522 at 894.827 kb on - strand, within MPMX19_04522 at 895.107 kb on + strand, within MPMX19_04522 at 895.107 kb on + strand, within MPMX19_04522 at 895.108 kb on - strand, within MPMX19_04522 at 895.108 kb on - strand, within MPMX19_04522 at 895.108 kb on - strand, within MPMX19_04522 at 895.108 kb on - strand, within MPMX19_04522 at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.392 kb on - strand at 895.393 kb on - strand at 895.393 kb on - strand at 895.393 kb on - strand at 895.428 kb on + strand at 895.428 kb on + strand at 895.428 kb on + strand at 895.428 kb on + strand at 895.428 kb on + strand at 895.429 kb on - strand at 895.429 kb on - strand at 895.581 kb on + strand, within MPMX19_04523 at 895.617 kb on + strand, within MPMX19_04523 at 895.617 kb on + strand, within MPMX19_04523 at 895.617 kb on + strand, within MPMX19_04523 at 895.617 kb on + strand, within MPMX19_04523 at 895.617 kb on + strand, within MPMX19_04523 at 895.618 kb on - strand, within MPMX19_04523 at 895.629 kb on + strand, within MPMX19_04523 at 895.629 kb on + strand, within MPMX19_04523 at 895.629 kb on + strand, within MPMX19_04523 at 895.630 kb on - strand, within MPMX19_04523 at 895.630 kb on - strand, within MPMX19_04523 at 895.630 kb on - strand, within MPMX19_04523 at 895.630 kb on - strand, within MPMX19_04523 at 895.630 kb on - strand, within MPMX19_04523 at 895.677 kb on + strand, within MPMX19_04523 at 895.678 kb on - strand, within MPMX19_04523 at 895.678 kb on - strand, within MPMX19_04523 at 895.725 kb on + strand, within MPMX19_04523 at 895.725 kb on + strand, within MPMX19_04523 at 895.725 kb on + strand, within MPMX19_04523 at 895.726 kb on - strand, within MPMX19_04523 at 895.726 kb on - strand, within MPMX19_04523 at 895.800 kb on + strand, within MPMX19_04523 at 895.800 kb on + strand, within MPMX19_04523 at 895.800 kb on + strand, within MPMX19_04523 at 895.800 kb on + strand, within MPMX19_04523 at 895.801 kb on - strand, within MPMX19_04523 at 895.801 kb on - strand, within MPMX19_04523 at 895.801 kb on - strand, within MPMX19_04523 at 895.836 kb on + strand, within MPMX19_04523 at 895.837 kb on - strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.899 kb on + strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.900 kb on - strand, within MPMX19_04523 at 895.935 kb on + strand, within MPMX19_04523 at 895.936 kb on - strand, within MPMX19_04523 at 896.073 kb on + strand, within MPMX19_04523 at 896.073 kb on + strand, within MPMX19_04523 at 896.074 kb on - strand, within MPMX19_04523 at 896.085 kb on + strand, within MPMX19_04523 at 896.085 kb on + strand, within MPMX19_04523 at 896.085 kb on + strand, within MPMX19_04523 at 896.085 kb on + strand, within MPMX19_04523 at 896.085 kb on + strand, within MPMX19_04523 at 896.086 kb on - strand, within MPMX19_04523 at 896.086 kb on - strand, within MPMX19_04523 at 896.086 kb on - strand, within MPMX19_04523 at 896.196 kb on + strand, within MPMX19_04523 at 896.196 kb on + strand, within MPMX19_04523 at 896.196 kb on + strand, within MPMX19_04523 at 896.196 kb on + strand, within MPMX19_04523 at 896.196 kb on + strand, within MPMX19_04523 at 896.196 kb on + strand, within MPMX19_04523 at 896.197 kb on - strand, within MPMX19_04523 at 896.197 kb on - strand, within MPMX19_04523 at 896.338 kb on - strand, within MPMX19_04523 at 896.338 kb on - strand, within MPMX19_04523 at 896.373 kb on + strand, within MPMX19_04523 at 896.373 kb on + strand, within MPMX19_04523 at 896.373 kb on + strand, within MPMX19_04523 at 896.373 kb on + strand, within MPMX19_04523 at 896.373 kb on + strand, within MPMX19_04523 at 896.373 kb on + strand, within MPMX19_04523 at 896.373 kb on + strand, within MPMX19_04523 at 896.373 kb on + strand, within MPMX19_04523 at 896.373 kb on + strand, within MPMX19_04523 at 896.374 kb on - strand, within MPMX19_04523 at 896.374 kb on - strand, within MPMX19_04523 at 896.374 kb on - strand, within MPMX19_04523
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 893,740 + -0.6 893,740 + -0.7 893,740 + -1.3 893,740 + -0.3 893,740 + -0.0 893,741 - +0.6 893,741 - -0.7 893,741 - -0.1 893,741 - +0.4 893,741 - -0.4 893,741 - +0.1 893,741 - -1.6 893,876 + MPMX19_04520 0.28 -0.0 893,877 - MPMX19_04520 0.29 -0.6 893,877 - MPMX19_04520 0.29 -0.4 893,877 - MPMX19_04520 0.29 -0.0 893,885 + MPMX19_04520 0.31 -0.2 893,885 + MPMX19_04520 0.31 +0.9 893,886 - MPMX19_04520 0.31 +0.3 893,966 + MPMX19_04520 0.49 +1.2 893,967 - MPMX19_04520 0.50 -2.5 893,967 - MPMX19_04520 0.50 -2.2 893,967 - MPMX19_04520 0.50 +0.4 893,967 - MPMX19_04520 0.50 -0.8 894,005 + MPMX19_04520 0.58 -1.4 894,006 - MPMX19_04520 0.59 -0.1 894,006 - MPMX19_04520 0.59 -0.5 894,006 - MPMX19_04520 0.59 -2.3 894,006 - MPMX19_04520 0.59 -1.0 894,006 - MPMX19_04520 0.59 -0.1 894,306 + MPMX19_04521 0.27 -0.3 894,306 + MPMX19_04521 0.27 +0.6 894,306 + MPMX19_04521 0.27 +0.0 894,306 + MPMX19_04521 0.27 -0.7 894,306 + MPMX19_04521 0.27 +0.7 894,306 + MPMX19_04521 0.27 -2.1 894,306 + MPMX19_04521 0.27 -0.2 894,306 + MPMX19_04521 0.27 -0.1 894,306 + MPMX19_04521 0.27 +0.3 894,306 + MPMX19_04521 0.27 -1.5 894,307 - MPMX19_04521 0.27 +0.4 894,345 + MPMX19_04521 0.35 -0.1 894,345 + MPMX19_04521 0.35 +0.2 894,346 - MPMX19_04521 0.36 -0.6 894,481 + MPMX19_04521 0.65 +0.7 894,481 + MPMX19_04521 0.65 -0.6 894,482 - MPMX19_04521 0.65 -0.2 894,482 - MPMX19_04521 0.65 -1.0 894,482 - MPMX19_04521 0.65 +0.3 894,826 + MPMX19_04522 0.25 -0.2 894,826 + MPMX19_04522 0.25 -1.9 894,827 - MPMX19_04522 0.25 -2.0 894,827 - MPMX19_04522 0.25 -1.0 895,107 + MPMX19_04522 0.62 -0.7 895,107 + MPMX19_04522 0.62 -1.3 895,108 - MPMX19_04522 0.62 +0.6 895,108 - MPMX19_04522 0.62 -0.1 895,108 - MPMX19_04522 0.62 -0.9 895,108 - MPMX19_04522 0.62 -1.7 895,341 + -0.0 895,341 + -0.3 895,341 + -0.1 895,341 + +0.1 895,341 + -0.1 895,341 + -1.5 895,341 + -1.6 895,341 + -1.0 895,341 + -0.6 895,341 + -2.2 895,341 + -0.3 895,341 + -0.9 895,341 + -1.1 895,341 + -0.5 895,341 + +0.9 895,342 - -0.7 895,342 - -1.4 895,342 - +0.1 895,342 - -0.4 895,342 - -1.0 895,342 - -0.9 895,342 - -0.0 895,342 - -0.7 895,342 - -0.5 895,342 - +0.8 895,342 - -0.8 895,342 - -2.0 895,342 - -2.5 895,342 - -1.0 895,342 - -1.2 895,342 - +0.7 895,342 - -0.6 895,342 - -1.1 895,392 - +1.3 895,393 - -1.4 895,393 - -1.4 895,393 - +0.4 895,428 + -1.0 895,428 + +0.2 895,428 + -0.3 895,428 + -0.0 895,428 + -1.0 895,429 - +0.1 895,429 - -0.6 895,581 + MPMX19_04523 0.12 -0.1 895,617 + MPMX19_04523 0.15 +0.7 895,617 + MPMX19_04523 0.15 -0.7 895,617 + MPMX19_04523 0.15 +0.1 895,617 + MPMX19_04523 0.15 -0.7 895,617 + MPMX19_04523 0.15 +0.4 895,618 - MPMX19_04523 0.15 -0.6 895,629 + MPMX19_04523 0.16 -1.2 895,629 + MPMX19_04523 0.16 +0.6 895,629 + MPMX19_04523 0.16 +0.8 895,630 - MPMX19_04523 0.16 -1.0 895,630 - MPMX19_04523 0.16 +2.3 895,630 - MPMX19_04523 0.16 -0.0 895,630 - MPMX19_04523 0.16 -1.4 895,630 - MPMX19_04523 0.16 -0.8 895,677 + MPMX19_04523 0.21 -0.4 895,678 - MPMX19_04523 0.21 -0.5 895,678 - MPMX19_04523 0.21 +0.6 895,725 + MPMX19_04523 0.25 -0.0 895,725 + MPMX19_04523 0.25 -1.2 895,725 + MPMX19_04523 0.25 -0.2 895,726 - MPMX19_04523 0.25 -0.7 895,726 - MPMX19_04523 0.25 -0.4 895,800 + MPMX19_04523 0.32 -0.9 895,800 + MPMX19_04523 0.32 -0.3 895,800 + MPMX19_04523 0.32 -0.5 895,800 + MPMX19_04523 0.32 -0.2 895,801 - MPMX19_04523 0.32 -0.3 895,801 - MPMX19_04523 0.32 -0.4 895,801 - MPMX19_04523 0.32 +0.9 895,836 + MPMX19_04523 0.36 +1.2 895,837 - MPMX19_04523 0.36 -1.9 895,899 + MPMX19_04523 0.42 -1.0 895,899 + MPMX19_04523 0.42 -0.4 895,899 + MPMX19_04523 0.42 -1.6 895,899 + MPMX19_04523 0.42 -0.3 895,899 + MPMX19_04523 0.42 -1.8 895,899 + MPMX19_04523 0.42 -0.7 895,899 + MPMX19_04523 0.42 -0.2 895,899 + MPMX19_04523 0.42 -0.6 895,899 + MPMX19_04523 0.42 +0.5 895,899 + MPMX19_04523 0.42 +0.3 895,899 + MPMX19_04523 0.42 -0.3 895,899 + MPMX19_04523 0.42 +0.7 895,899 + MPMX19_04523 0.42 -0.6 895,899 + MPMX19_04523 0.42 -0.1 895,899 + MPMX19_04523 0.42 +0.1 895,899 + MPMX19_04523 0.42 +0.8 895,899 + MPMX19_04523 0.42 +0.1 895,899 + MPMX19_04523 0.42 -0.3 895,899 + MPMX19_04523 0.42 -0.6 895,899 + MPMX19_04523 0.42 -1.4 895,899 + MPMX19_04523 0.42 -0.6 895,899 + MPMX19_04523 0.42 -1.2 895,899 + MPMX19_04523 0.42 -1.9 895,899 + MPMX19_04523 0.42 -0.7 895,899 + MPMX19_04523 0.42 +0.3 895,899 + MPMX19_04523 0.42 +0.2 895,899 + MPMX19_04523 0.42 -0.6 895,899 + MPMX19_04523 0.42 +0.5 895,900 - MPMX19_04523 0.42 -0.3 895,900 - MPMX19_04523 0.42 +1.0 895,900 - MPMX19_04523 0.42 -1.7 895,900 - MPMX19_04523 0.42 -1.1 895,900 - MPMX19_04523 0.42 -1.6 895,900 - MPMX19_04523 0.42 +1.1 895,900 - MPMX19_04523 0.42 +0.4 895,900 - MPMX19_04523 0.42 +0.4 895,900 - MPMX19_04523 0.42 -0.5 895,900 - MPMX19_04523 0.42 +0.6 895,900 - MPMX19_04523 0.42 -0.8 895,900 - MPMX19_04523 0.42 -0.5 895,900 - MPMX19_04523 0.42 -1.2 895,900 - MPMX19_04523 0.42 +0.4 895,935 + MPMX19_04523 0.45 -0.6 895,936 - MPMX19_04523 0.45 +0.6 896,073 + MPMX19_04523 0.58 +0.3 896,073 + MPMX19_04523 0.58 +0.2 896,074 - MPMX19_04523 0.58 +0.9 896,085 + MPMX19_04523 0.59 -0.9 896,085 + MPMX19_04523 0.59 -0.7 896,085 + MPMX19_04523 0.59 +0.5 896,085 + MPMX19_04523 0.59 -2.4 896,085 + MPMX19_04523 0.59 -2.2 896,086 - MPMX19_04523 0.59 -0.7 896,086 - MPMX19_04523 0.59 +0.1 896,086 - MPMX19_04523 0.59 +0.1 896,196 + MPMX19_04523 0.70 -0.5 896,196 + MPMX19_04523 0.70 +0.1 896,196 + MPMX19_04523 0.70 -0.9 896,196 + MPMX19_04523 0.70 -2.1 896,196 + MPMX19_04523 0.70 -1.4 896,196 + MPMX19_04523 0.70 -0.7 896,197 - MPMX19_04523 0.70 -0.8 896,197 - MPMX19_04523 0.70 +0.4 896,338 - MPMX19_04523 0.83 -1.6 896,338 - MPMX19_04523 0.83 +0.3 896,373 + MPMX19_04523 0.87 +0.4 896,373 + MPMX19_04523 0.87 +0.8 896,373 + MPMX19_04523 0.87 -0.5 896,373 + MPMX19_04523 0.87 -0.3 896,373 + MPMX19_04523 0.87 +0.7 896,373 + MPMX19_04523 0.87 -0.7 896,373 + MPMX19_04523 0.87 -1.3 896,373 + MPMX19_04523 0.87 -1.0 896,373 + MPMX19_04523 0.87 -2.7 896,374 - MPMX19_04523 0.87 +0.2 896,374 - MPMX19_04523 0.87 -1.4 896,374 - MPMX19_04523 0.87 +0.5
Or see this region's nucleotide sequence