Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04494

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04493 and MPMX19_04494 are separated by 245 nucleotidesMPMX19_04494 and MPMX19_04495 are separated by 1 nucleotides MPMX19_04493: MPMX19_04493 - PCP degradation transcriptional activation protein, at 860,767 to 861,780 _04493 MPMX19_04494: MPMX19_04494 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 862,026 to 862,979 _04494 MPMX19_04495: MPMX19_04495 - hypothetical protein, at 862,981 to 864,207 _04495 Position (kb) 862 863Strain fitness (log2 ratio) -2 -1 0 1 2at 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.098 kb on - strand, within MPMX19_04493at 861.098 kb on - strand, within MPMX19_04493at 861.098 kb on - strand, within MPMX19_04493at 861.434 kb on + strand, within MPMX19_04493at 861.434 kb on + strand, within MPMX19_04493at 861.434 kb on + strand, within MPMX19_04493at 861.435 kb on - strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.637 kb on + strand, within MPMX19_04493at 861.637 kb on + strand, within MPMX19_04493at 861.637 kb on + strand, within MPMX19_04493at 861.637 kb on + strand, within MPMX19_04493at 861.637 kb on + strand, within MPMX19_04493at 861.638 kb on - strand, within MPMX19_04493at 861.638 kb on - strand, within MPMX19_04493at 861.638 kb on - strand, within MPMX19_04493at 861.638 kb on - strand, within MPMX19_04493at 861.638 kb on - strand, within MPMX19_04493at 861.779 kb on - strandat 861.812 kb on + strandat 861.812 kb on + strandat 861.813 kb on - strandat 861.813 kb on - strandat 861.817 kb on - strandat 861.817 kb on - strandat 861.817 kb on - strandat 861.817 kb on - strandat 861.857 kb on + strandat 861.857 kb on + strandat 861.857 kb on + strandat 861.858 kb on - strandat 861.858 kb on - strandat 861.858 kb on - strandat 861.858 kb on - strandat 861.912 kb on + strandat 861.913 kb on - strandat 861.913 kb on - strandat 861.913 kb on - strandat 861.926 kb on - strandat 861.926 kb on - strandat 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.299 kb on - strand, within MPMX19_04494at 862.299 kb on - strand, within MPMX19_04494at 862.368 kb on + strand, within MPMX19_04494at 862.368 kb on + strand, within MPMX19_04494at 862.368 kb on + strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.380 kb on + strand, within MPMX19_04494at 862.380 kb on + strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.846 kb on - strand, within MPMX19_04494at 863.365 kb on + strand, within MPMX19_04495at 863.365 kb on + strand, within MPMX19_04495at 863.365 kb on + strand, within MPMX19_04495at 863.366 kb on - strand, within MPMX19_04495at 863.366 kb on - strand, within MPMX19_04495at 863.551 kb on + strand, within MPMX19_04495at 863.551 kb on + strand, within MPMX19_04495at 863.551 kb on + strand, within MPMX19_04495at 863.551 kb on + strand, within MPMX19_04495at 863.620 kb on + strand, within MPMX19_04495at 863.719 kb on + strand, within MPMX19_04495at 863.719 kb on + strand, within MPMX19_04495at 863.720 kb on - strand, within MPMX19_04495at 863.720 kb on - strand, within MPMX19_04495

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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861,097 + MPMX19_04493 0.33 -1.9
861,097 + MPMX19_04493 0.33 +0.8
861,097 + MPMX19_04493 0.33 -0.9
861,097 + MPMX19_04493 0.33 -0.5
861,097 + MPMX19_04493 0.33 -0.4
861,098 - MPMX19_04493 0.33 +1.0
861,098 - MPMX19_04493 0.33 -1.1
861,098 - MPMX19_04493 0.33 +0.2
861,434 + MPMX19_04493 0.66 +0.2
861,434 + MPMX19_04493 0.66 -0.2
861,434 + MPMX19_04493 0.66 -0.6
861,435 - MPMX19_04493 0.66 -0.6
861,526 + MPMX19_04493 0.75 -2.1
861,526 + MPMX19_04493 0.75 +0.1
861,526 + MPMX19_04493 0.75 -0.0
861,526 + MPMX19_04493 0.75 +0.1
861,526 + MPMX19_04493 0.75 +0.9
861,527 - MPMX19_04493 0.75 +0.1
861,527 - MPMX19_04493 0.75 +0.6
861,527 - MPMX19_04493 0.75 -0.4
861,527 - MPMX19_04493 0.75 -0.1
861,527 - MPMX19_04493 0.75 -2.4
861,637 + MPMX19_04493 0.86 -0.0
861,637 + MPMX19_04493 0.86 -0.8
861,637 + MPMX19_04493 0.86 -0.2
861,637 + MPMX19_04493 0.86 -0.6
861,637 + MPMX19_04493 0.86 -1.3
861,638 - MPMX19_04493 0.86 -1.4
861,638 - MPMX19_04493 0.86 -0.4
861,638 - MPMX19_04493 0.86 -0.1
861,638 - MPMX19_04493 0.86 -0.7
861,638 - MPMX19_04493 0.86 +1.1
861,779 - +0.9
861,812 + -0.4
861,812 + -0.1
861,813 - -1.4
861,813 - +0.6
861,817 - +0.2
861,817 - -0.3
861,817 - -0.3
861,817 - -1.3
861,857 + -1.5
861,857 + -0.4
861,857 + -0.7
861,858 - -0.3
861,858 - -0.9
861,858 - +0.2
861,858 - -0.1
861,912 + +0.1
861,913 - -0.2
861,913 - +0.4
861,913 - -0.8
861,926 - -2.1
861,926 - -0.2
862,298 + MPMX19_04494 0.29 +1.3
862,298 + MPMX19_04494 0.29 -0.3
862,298 + MPMX19_04494 0.29 -0.5
862,298 + MPMX19_04494 0.29 +1.3
862,298 + MPMX19_04494 0.29 -0.3
862,298 + MPMX19_04494 0.29 +0.7
862,298 + MPMX19_04494 0.29 +0.8
862,298 + MPMX19_04494 0.29 -0.7
862,298 + MPMX19_04494 0.29 +0.2
862,299 - MPMX19_04494 0.29 +1.1
862,299 - MPMX19_04494 0.29 +1.9
862,368 + MPMX19_04494 0.36 +0.8
862,368 + MPMX19_04494 0.36 -0.2
862,368 + MPMX19_04494 0.36 -0.1
862,369 - MPMX19_04494 0.36 -0.2
862,369 - MPMX19_04494 0.36 +1.8
862,369 - MPMX19_04494 0.36 +0.8
862,369 - MPMX19_04494 0.36 -1.0
862,380 + MPMX19_04494 0.37 -0.6
862,380 + MPMX19_04494 0.37 -0.1
862,381 - MPMX19_04494 0.37 -2.1
862,381 - MPMX19_04494 0.37 +0.6
862,381 - MPMX19_04494 0.37 +0.1
862,381 - MPMX19_04494 0.37 -0.7
862,381 - MPMX19_04494 0.37 -1.6
862,381 - MPMX19_04494 0.37 +0.3
862,846 - MPMX19_04494 0.86 -1.2
863,365 + MPMX19_04495 0.31 -0.5
863,365 + MPMX19_04495 0.31 +0.8
863,365 + MPMX19_04495 0.31 +0.6
863,366 - MPMX19_04495 0.31 +0.6
863,366 - MPMX19_04495 0.31 -0.0
863,551 + MPMX19_04495 0.46 -1.2
863,551 + MPMX19_04495 0.46 -0.3
863,551 + MPMX19_04495 0.46 -0.9
863,551 + MPMX19_04495 0.46 -1.4
863,620 + MPMX19_04495 0.52 +0.8
863,719 + MPMX19_04495 0.60 -0.3
863,719 + MPMX19_04495 0.60 +0.2
863,720 - MPMX19_04495 0.60 -0.7
863,720 - MPMX19_04495 0.60 +0.3

Or see this region's nucleotide sequence