Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04423 and MPMX19_04424 are separated by 947 nucleotides MPMX19_04424 and MPMX19_04425 are separated by 28 nucleotides
MPMX19_04423: MPMX19_04423 - hypothetical protein, at 787,895 to 788,398
_04423
MPMX19_04424: MPMX19_04424 - Phyllosphere-induced regulator PhyR, at 789,346 to 790,149
_04424
MPMX19_04425: MPMX19_04425 - Formyltetrahydrofolate deformylase, at 790,178 to 791,044
_04425
Position (kb) 789
790
791 Strain fitness (log2 ratio) -2
-1
0
1
2 at 788.548 kb on + strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.695 kb on + strand at 788.695 kb on + strand at 788.695 kb on + strand at 788.696 kb on - strand at 788.696 kb on - strand at 788.913 kb on + strand at 788.914 kb on - strand at 788.914 kb on - strand at 788.914 kb on - strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.940 kb on - strand at 788.940 kb on - strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.979 kb on - strand at 789.023 kb on + strand at 789.023 kb on + strand at 789.024 kb on - strand at 789.024 kb on - strand at 789.026 kb on + strand at 789.026 kb on + strand at 789.027 kb on - strand at 789.053 kb on + strand at 789.062 kb on + strand at 789.087 kb on - strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.273 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.385 kb on + strand at 789.386 kb on - strand at 789.463 kb on + strand, within MPMX19_04424 at 789.463 kb on + strand, within MPMX19_04424 at 789.464 kb on - strand, within MPMX19_04424 at 789.464 kb on - strand, within MPMX19_04424 at 789.464 kb on - strand, within MPMX19_04424 at 789.523 kb on + strand, within MPMX19_04424 at 789.523 kb on + strand, within MPMX19_04424 at 789.524 kb on - strand, within MPMX19_04424 at 789.524 kb on - strand, within MPMX19_04424 at 789.580 kb on + strand, within MPMX19_04424 at 789.580 kb on + strand, within MPMX19_04424 at 789.580 kb on + strand, within MPMX19_04424 at 789.581 kb on - strand, within MPMX19_04424 at 789.581 kb on - strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.797 kb on - strand, within MPMX19_04424 at 790.179 kb on + strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 788,548 + -0.7 788,560 - -0.7 788,560 - -1.5 788,560 - -2.0 788,560 - -0.2 788,628 - +0.6 788,628 - -0.4 788,628 - -0.7 788,628 - -1.1 788,628 - -0.7 788,628 - -2.2 788,628 - +0.5 788,639 + -0.2 788,639 + -1.4 788,639 + -0.1 788,639 + +0.2 788,639 + -1.0 788,640 - +0.6 788,640 - +0.6 788,640 - +0.1 788,640 - +0.3 788,640 - -0.1 788,640 - -0.6 788,695 + -1.0 788,695 + -0.6 788,695 + -0.1 788,696 - -0.6 788,696 - +0.2 788,913 + -0.4 788,914 - -1.5 788,914 - +2.0 788,914 - -1.6 788,921 + +0.1 788,921 + +1.4 788,921 + +0.1 788,921 + -0.5 788,921 + +0.9 788,921 + -0.4 788,921 + -1.5 788,921 + -0.2 788,921 + +0.5 788,921 + -1.2 788,922 - -0.8 788,922 - +0.4 788,922 - -0.9 788,922 - -0.5 788,939 + +0.3 788,939 + -1.1 788,939 + -1.7 788,939 + -0.0 788,939 + -0.7 788,940 - -0.6 788,940 - -0.4 788,963 + +0.3 788,963 + -0.4 788,963 + -0.3 788,963 + -1.1 788,963 + -0.2 788,964 - -0.5 788,964 - -1.6 788,964 - +0.2 788,964 - -0.0 788,978 + -0.1 788,978 + +0.9 788,978 + -2.2 788,978 + -2.3 788,979 - -1.6 789,023 + -0.0 789,023 + -0.2 789,024 - -0.4 789,024 - -1.2 789,026 + +1.6 789,026 + +0.4 789,027 - -0.1 789,053 + -1.3 789,062 + -0.5 789,087 - +0.4 789,105 + +0.3 789,105 + -0.2 789,105 + -1.6 789,105 + -0.3 789,106 - -1.5 789,106 - -1.0 789,106 - -1.0 789,106 - +0.8 789,273 + +0.4 789,355 + -0.2 789,355 + -0.8 789,355 + +0.6 789,355 + -0.4 789,355 + -0.1 789,355 + -0.5 789,355 + +0.9 789,355 + -0.0 789,355 + -1.6 789,355 + -1.2 789,355 + -2.0 789,355 + -1.6 789,355 + +0.7 789,355 + -0.6 789,356 - +0.2 789,356 - +0.1 789,356 - -1.9 789,356 - +0.6 789,356 - -0.3 789,385 + +0.3 789,386 - -0.2 789,463 + MPMX19_04424 0.15 -1.6 789,463 + MPMX19_04424 0.15 -0.3 789,464 - MPMX19_04424 0.15 -0.4 789,464 - MPMX19_04424 0.15 -1.4 789,464 - MPMX19_04424 0.15 -1.2 789,523 + MPMX19_04424 0.22 -0.7 789,523 + MPMX19_04424 0.22 -1.2 789,524 - MPMX19_04424 0.22 -1.1 789,524 - MPMX19_04424 0.22 +1.2 789,580 + MPMX19_04424 0.29 -0.7 789,580 + MPMX19_04424 0.29 -0.6 789,580 + MPMX19_04424 0.29 -1.1 789,581 - MPMX19_04424 0.29 -0.4 789,581 - MPMX19_04424 0.29 -0.7 789,634 + MPMX19_04424 0.36 -0.8 789,634 + MPMX19_04424 0.36 -0.9 789,634 + MPMX19_04424 0.36 -0.7 789,634 + MPMX19_04424 0.36 -0.5 789,634 + MPMX19_04424 0.36 -0.7 789,635 - MPMX19_04424 0.36 -1.4 789,635 - MPMX19_04424 0.36 +0.3 789,635 - MPMX19_04424 0.36 -0.2 789,635 - MPMX19_04424 0.36 +1.1 789,635 - MPMX19_04424 0.36 +0.2 789,635 - MPMX19_04424 0.36 -2.6 789,635 - MPMX19_04424 0.36 -0.1 789,635 - MPMX19_04424 0.36 -0.2 789,786 + MPMX19_04424 0.55 -1.0 789,786 + MPMX19_04424 0.55 -1.4 789,786 + MPMX19_04424 0.55 -2.4 789,786 + MPMX19_04424 0.55 -0.6 789,787 - MPMX19_04424 0.55 -1.9 789,787 - MPMX19_04424 0.55 +0.7 789,787 - MPMX19_04424 0.55 +0.6 789,787 - MPMX19_04424 0.55 -0.7 789,787 - MPMX19_04424 0.55 -0.3 789,787 - MPMX19_04424 0.55 -1.7 789,787 - MPMX19_04424 0.55 -1.7 789,797 - MPMX19_04424 0.56 +0.1 790,179 + +0.6 791,064 - +0.3 791,064 - -0.0 791,064 - -0.0 791,064 - -0.7 791,064 - -0.4 791,064 - -0.3
Or see this region's nucleotide sequence