Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04424

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04423 and MPMX19_04424 are separated by 947 nucleotidesMPMX19_04424 and MPMX19_04425 are separated by 28 nucleotides MPMX19_04423: MPMX19_04423 - hypothetical protein, at 787,895 to 788,398 _04423 MPMX19_04424: MPMX19_04424 - Phyllosphere-induced regulator PhyR, at 789,346 to 790,149 _04424 MPMX19_04425: MPMX19_04425 - Formyltetrahydrofolate deformylase, at 790,178 to 791,044 _04425 Position (kb) 789 790 791Strain fitness (log2 ratio) -2 -1 0 1 2at 788.548 kb on + strandat 788.560 kb on - strandat 788.560 kb on - strandat 788.560 kb on - strandat 788.560 kb on - strandat 788.628 kb on - strandat 788.628 kb on - strandat 788.628 kb on - strandat 788.628 kb on - strandat 788.628 kb on - strandat 788.628 kb on - strandat 788.628 kb on - strandat 788.639 kb on + strandat 788.639 kb on + strandat 788.639 kb on + strandat 788.639 kb on + strandat 788.639 kb on + strandat 788.640 kb on - strandat 788.640 kb on - strandat 788.640 kb on - strandat 788.640 kb on - strandat 788.640 kb on - strandat 788.640 kb on - strandat 788.695 kb on + strandat 788.695 kb on + strandat 788.695 kb on + strandat 788.696 kb on - strandat 788.696 kb on - strandat 788.913 kb on + strandat 788.914 kb on - strandat 788.914 kb on - strandat 788.914 kb on - strandat 788.921 kb on + strandat 788.921 kb on + strandat 788.921 kb on + strandat 788.921 kb on + strandat 788.921 kb on + strandat 788.921 kb on + strandat 788.921 kb on + strandat 788.921 kb on + strandat 788.921 kb on + strandat 788.921 kb on + strandat 788.922 kb on - strandat 788.922 kb on - strandat 788.922 kb on - strandat 788.922 kb on - strandat 788.939 kb on + strandat 788.939 kb on + strandat 788.939 kb on + strandat 788.939 kb on + strandat 788.939 kb on + strandat 788.940 kb on - strandat 788.940 kb on - strandat 788.963 kb on + strandat 788.963 kb on + strandat 788.963 kb on + strandat 788.963 kb on + strandat 788.963 kb on + strandat 788.964 kb on - strandat 788.964 kb on - strandat 788.964 kb on - strandat 788.964 kb on - strandat 788.978 kb on + strandat 788.978 kb on + strandat 788.978 kb on + strandat 788.978 kb on + strandat 788.979 kb on - strandat 789.023 kb on + strandat 789.023 kb on + strandat 789.024 kb on - strandat 789.024 kb on - strandat 789.026 kb on + strandat 789.026 kb on + strandat 789.027 kb on - strandat 789.053 kb on + strandat 789.062 kb on + strandat 789.087 kb on - strandat 789.105 kb on + strandat 789.105 kb on + strandat 789.105 kb on + strandat 789.105 kb on + strandat 789.106 kb on - strandat 789.106 kb on - strandat 789.106 kb on - strandat 789.106 kb on - strandat 789.273 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.355 kb on + strandat 789.356 kb on - strandat 789.356 kb on - strandat 789.356 kb on - strandat 789.356 kb on - strandat 789.356 kb on - strandat 789.385 kb on + strandat 789.386 kb on - strandat 789.463 kb on + strand, within MPMX19_04424at 789.463 kb on + strand, within MPMX19_04424at 789.464 kb on - strand, within MPMX19_04424at 789.464 kb on - strand, within MPMX19_04424at 789.464 kb on - strand, within MPMX19_04424at 789.523 kb on + strand, within MPMX19_04424at 789.523 kb on + strand, within MPMX19_04424at 789.524 kb on - strand, within MPMX19_04424at 789.524 kb on - strand, within MPMX19_04424at 789.580 kb on + strand, within MPMX19_04424at 789.580 kb on + strand, within MPMX19_04424at 789.580 kb on + strand, within MPMX19_04424at 789.581 kb on - strand, within MPMX19_04424at 789.581 kb on - strand, within MPMX19_04424at 789.634 kb on + strand, within MPMX19_04424at 789.634 kb on + strand, within MPMX19_04424at 789.634 kb on + strand, within MPMX19_04424at 789.634 kb on + strand, within MPMX19_04424at 789.634 kb on + strand, within MPMX19_04424at 789.635 kb on - strand, within MPMX19_04424at 789.635 kb on - strand, within MPMX19_04424at 789.635 kb on - strand, within MPMX19_04424at 789.635 kb on - strand, within MPMX19_04424at 789.635 kb on - strand, within MPMX19_04424at 789.635 kb on - strand, within MPMX19_04424at 789.635 kb on - strand, within MPMX19_04424at 789.635 kb on - strand, within MPMX19_04424at 789.786 kb on + strand, within MPMX19_04424at 789.786 kb on + strand, within MPMX19_04424at 789.786 kb on + strand, within MPMX19_04424at 789.786 kb on + strand, within MPMX19_04424at 789.787 kb on - strand, within MPMX19_04424at 789.787 kb on - strand, within MPMX19_04424at 789.787 kb on - strand, within MPMX19_04424at 789.787 kb on - strand, within MPMX19_04424at 789.787 kb on - strand, within MPMX19_04424at 789.787 kb on - strand, within MPMX19_04424at 789.787 kb on - strand, within MPMX19_04424at 789.797 kb on - strand, within MPMX19_04424at 790.179 kb on + strandat 791.064 kb on - strandat 791.064 kb on - strandat 791.064 kb on - strandat 791.064 kb on - strandat 791.064 kb on - strandat 791.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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788,548 + -0.7
788,560 - -0.7
788,560 - -1.5
788,560 - -2.0
788,560 - -0.2
788,628 - +0.6
788,628 - -0.4
788,628 - -0.7
788,628 - -1.1
788,628 - -0.7
788,628 - -2.2
788,628 - +0.5
788,639 + -0.2
788,639 + -1.4
788,639 + -0.1
788,639 + +0.2
788,639 + -1.0
788,640 - +0.6
788,640 - +0.6
788,640 - +0.1
788,640 - +0.3
788,640 - -0.1
788,640 - -0.6
788,695 + -1.0
788,695 + -0.6
788,695 + -0.1
788,696 - -0.6
788,696 - +0.2
788,913 + -0.4
788,914 - -1.5
788,914 - +2.0
788,914 - -1.6
788,921 + +0.1
788,921 + +1.4
788,921 + +0.1
788,921 + -0.5
788,921 + +0.9
788,921 + -0.4
788,921 + -1.5
788,921 + -0.2
788,921 + +0.5
788,921 + -1.2
788,922 - -0.8
788,922 - +0.4
788,922 - -0.9
788,922 - -0.5
788,939 + +0.3
788,939 + -1.1
788,939 + -1.7
788,939 + -0.0
788,939 + -0.7
788,940 - -0.6
788,940 - -0.4
788,963 + +0.3
788,963 + -0.4
788,963 + -0.3
788,963 + -1.1
788,963 + -0.2
788,964 - -0.5
788,964 - -1.6
788,964 - +0.2
788,964 - -0.0
788,978 + -0.1
788,978 + +0.9
788,978 + -2.2
788,978 + -2.3
788,979 - -1.6
789,023 + -0.0
789,023 + -0.2
789,024 - -0.4
789,024 - -1.2
789,026 + +1.6
789,026 + +0.4
789,027 - -0.1
789,053 + -1.3
789,062 + -0.5
789,087 - +0.4
789,105 + +0.3
789,105 + -0.2
789,105 + -1.6
789,105 + -0.3
789,106 - -1.5
789,106 - -1.0
789,106 - -1.0
789,106 - +0.8
789,273 + +0.4
789,355 + -0.2
789,355 + -0.8
789,355 + +0.6
789,355 + -0.4
789,355 + -0.1
789,355 + -0.5
789,355 + +0.9
789,355 + -0.0
789,355 + -1.6
789,355 + -1.2
789,355 + -2.0
789,355 + -1.6
789,355 + +0.7
789,355 + -0.6
789,356 - +0.2
789,356 - +0.1
789,356 - -1.9
789,356 - +0.6
789,356 - -0.3
789,385 + +0.3
789,386 - -0.2
789,463 + MPMX19_04424 0.15 -1.6
789,463 + MPMX19_04424 0.15 -0.3
789,464 - MPMX19_04424 0.15 -0.4
789,464 - MPMX19_04424 0.15 -1.4
789,464 - MPMX19_04424 0.15 -1.2
789,523 + MPMX19_04424 0.22 -0.7
789,523 + MPMX19_04424 0.22 -1.2
789,524 - MPMX19_04424 0.22 -1.1
789,524 - MPMX19_04424 0.22 +1.2
789,580 + MPMX19_04424 0.29 -0.7
789,580 + MPMX19_04424 0.29 -0.6
789,580 + MPMX19_04424 0.29 -1.1
789,581 - MPMX19_04424 0.29 -0.4
789,581 - MPMX19_04424 0.29 -0.7
789,634 + MPMX19_04424 0.36 -0.8
789,634 + MPMX19_04424 0.36 -0.9
789,634 + MPMX19_04424 0.36 -0.7
789,634 + MPMX19_04424 0.36 -0.5
789,634 + MPMX19_04424 0.36 -0.7
789,635 - MPMX19_04424 0.36 -1.4
789,635 - MPMX19_04424 0.36 +0.3
789,635 - MPMX19_04424 0.36 -0.2
789,635 - MPMX19_04424 0.36 +1.1
789,635 - MPMX19_04424 0.36 +0.2
789,635 - MPMX19_04424 0.36 -2.6
789,635 - MPMX19_04424 0.36 -0.1
789,635 - MPMX19_04424 0.36 -0.2
789,786 + MPMX19_04424 0.55 -1.0
789,786 + MPMX19_04424 0.55 -1.4
789,786 + MPMX19_04424 0.55 -2.4
789,786 + MPMX19_04424 0.55 -0.6
789,787 - MPMX19_04424 0.55 -1.9
789,787 - MPMX19_04424 0.55 +0.7
789,787 - MPMX19_04424 0.55 +0.6
789,787 - MPMX19_04424 0.55 -0.7
789,787 - MPMX19_04424 0.55 -0.3
789,787 - MPMX19_04424 0.55 -1.7
789,787 - MPMX19_04424 0.55 -1.7
789,797 - MPMX19_04424 0.56 +0.1
790,179 + +0.6
791,064 - +0.3
791,064 - -0.0
791,064 - -0.0
791,064 - -0.7
791,064 - -0.4
791,064 - -0.3

Or see this region's nucleotide sequence