Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04217

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04215 and MPMX19_04216 are separated by 45 nucleotidesMPMX19_04216 and MPMX19_04217 are separated by 51 nucleotidesMPMX19_04217 and MPMX19_04218 are separated by 225 nucleotides MPMX19_04215: MPMX19_04215 - hypothetical protein, at 556,181 to 556,756 _04215 MPMX19_04216: MPMX19_04216 - hypothetical protein, at 556,802 to 557,014 _04216 MPMX19_04217: MPMX19_04217 - Flagellar basal-body rod protein FlgC, at 557,066 to 557,497 _04217 MPMX19_04218: MPMX19_04218 - Protein phosphatase PrpC, at 557,723 to 558,538 _04218 Position (kb) 557 558Strain fitness (log2 ratio) -2 -1 0 1 2at 556.075 kb on + strandat 556.076 kb on - strandat 556.082 kb on + strandat 556.083 kb on - strandat 556.100 kb on + strandat 556.100 kb on + strandat 556.106 kb on + strandat 556.107 kb on - strandat 556.119 kb on + strandat 556.119 kb on + strandat 556.140 kb on + strandat 556.140 kb on + strandat 556.145 kb on + strandat 556.145 kb on + strandat 556.164 kb on - strandat 556.324 kb on + strand, within MPMX19_04215at 556.324 kb on + strand, within MPMX19_04215at 556.325 kb on - strand, within MPMX19_04215at 556.325 kb on - strand, within MPMX19_04215at 556.370 kb on + strand, within MPMX19_04215at 556.370 kb on + strand, within MPMX19_04215at 556.370 kb on + strand, within MPMX19_04215at 556.370 kb on + strand, within MPMX19_04215at 556.370 kb on + strand, within MPMX19_04215at 556.370 kb on + strand, within MPMX19_04215at 556.370 kb on + strand, within MPMX19_04215at 556.370 kb on + strand, within MPMX19_04215at 556.370 kb on + strand, within MPMX19_04215at 556.371 kb on - strand, within MPMX19_04215at 556.371 kb on - strand, within MPMX19_04215at 556.371 kb on - strand, within MPMX19_04215at 556.371 kb on - strand, within MPMX19_04215at 556.371 kb on - strand, within MPMX19_04215at 556.371 kb on - strand, within MPMX19_04215at 556.371 kb on - strand, within MPMX19_04215at 556.371 kb on - strand, within MPMX19_04215at 556.371 kb on - strand, within MPMX19_04215at 556.371 kb on - strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.466 kb on + strand, within MPMX19_04215at 556.467 kb on - strand, within MPMX19_04215at 556.467 kb on - strand, within MPMX19_04215at 556.467 kb on - strand, within MPMX19_04215at 556.467 kb on - strand, within MPMX19_04215at 556.467 kb on - strand, within MPMX19_04215at 556.467 kb on - strand, within MPMX19_04215at 556.467 kb on - strand, within MPMX19_04215at 556.467 kb on - strand, within MPMX19_04215at 556.467 kb on - strand, within MPMX19_04215at 556.467 kb on - strand, within MPMX19_04215at 556.577 kb on + strand, within MPMX19_04215at 556.577 kb on + strand, within MPMX19_04215at 556.577 kb on + strand, within MPMX19_04215at 556.577 kb on + strand, within MPMX19_04215at 556.577 kb on + strand, within MPMX19_04215at 556.577 kb on + strand, within MPMX19_04215at 556.577 kb on + strand, within MPMX19_04215at 556.577 kb on + strand, within MPMX19_04215at 556.577 kb on + strand, within MPMX19_04215at 556.577 kb on + strand, within MPMX19_04215at 556.577 kb on + strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 556.578 kb on - strand, within MPMX19_04215at 557.136 kb on + strand, within MPMX19_04217at 557.136 kb on + strand, within MPMX19_04217at 557.137 kb on - strand, within MPMX19_04217at 557.137 kb on - strand, within MPMX19_04217at 557.137 kb on - strand, within MPMX19_04217at 557.164 kb on + strand, within MPMX19_04217at 557.164 kb on + strand, within MPMX19_04217at 557.164 kb on + strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.239 kb on - strand, within MPMX19_04217at 557.239 kb on - strand, within MPMX19_04217at 557.239 kb on - strand, within MPMX19_04217at 557.239 kb on - strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.251 kb on - strand, within MPMX19_04217at 557.251 kb on - strand, within MPMX19_04217at 557.251 kb on - strand, within MPMX19_04217at 557.251 kb on - strand, within MPMX19_04217at 557.325 kb on + strand, within MPMX19_04217at 557.325 kb on + strand, within MPMX19_04217at 557.325 kb on + strand, within MPMX19_04217at 557.325 kb on + strand, within MPMX19_04217at 557.325 kb on + strand, within MPMX19_04217at 557.326 kb on - strand, within MPMX19_04217at 557.326 kb on - strand, within MPMX19_04217at 557.326 kb on - strand, within MPMX19_04217at 557.326 kb on - strand, within MPMX19_04217at 557.458 kb on + strandat 557.458 kb on + strandat 557.459 kb on - strandat 557.497 kb on + strandat 557.497 kb on + strandat 557.498 kb on - strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.553 kb on + strandat 557.579 kb on + strandat 557.579 kb on + strandat 557.579 kb on + strandat 557.579 kb on + strandat 557.579 kb on + strandat 557.579 kb on + strandat 557.580 kb on - strandat 557.580 kb on - strandat 557.580 kb on - strandat 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.060 kb on - strand, within MPMX19_04218at 558.060 kb on - strand, within MPMX19_04218at 558.060 kb on - strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.183 kb on - strand, within MPMX19_04218at 558.183 kb on - strand, within MPMX19_04218at 558.233 kb on + strand, within MPMX19_04218at 558.233 kb on + strand, within MPMX19_04218at 558.234 kb on - strand, within MPMX19_04218at 558.234 kb on - strand, within MPMX19_04218at 558.234 kb on - strand, within MPMX19_04218at 558.240 kb on + strand, within MPMX19_04218at 558.240 kb on + strand, within MPMX19_04218at 558.240 kb on + strand, within MPMX19_04218at 558.241 kb on - strand, within MPMX19_04218at 558.241 kb on - strand, within MPMX19_04218

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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556,075 + -1.8
556,076 - -0.4
556,082 + +0.1
556,083 - -1.2
556,100 + +0.3
556,100 + -0.7
556,106 + -0.5
556,107 - -2.2
556,119 + -1.4
556,119 + +0.0
556,140 + -0.7
556,140 + -0.1
556,145 + +0.7
556,145 + +0.8
556,164 - -0.0
556,324 + MPMX19_04215 0.25 -0.5
556,324 + MPMX19_04215 0.25 -1.0
556,325 - MPMX19_04215 0.25 -0.7
556,325 - MPMX19_04215 0.25 +0.1
556,370 + MPMX19_04215 0.33 +0.1
556,370 + MPMX19_04215 0.33 +0.0
556,370 + MPMX19_04215 0.33 -0.3
556,370 + MPMX19_04215 0.33 +0.9
556,370 + MPMX19_04215 0.33 +0.4
556,370 + MPMX19_04215 0.33 -0.4
556,370 + MPMX19_04215 0.33 -2.0
556,370 + MPMX19_04215 0.33 +0.6
556,370 + MPMX19_04215 0.33 -0.5
556,371 - MPMX19_04215 0.33 +1.0
556,371 - MPMX19_04215 0.33 +0.3
556,371 - MPMX19_04215 0.33 +0.0
556,371 - MPMX19_04215 0.33 -0.1
556,371 - MPMX19_04215 0.33 -1.2
556,371 - MPMX19_04215 0.33 -0.9
556,371 - MPMX19_04215 0.33 +0.5
556,371 - MPMX19_04215 0.33 +0.1
556,371 - MPMX19_04215 0.33 -0.5
556,371 - MPMX19_04215 0.33 -0.7
556,466 + MPMX19_04215 0.49 -1.4
556,466 + MPMX19_04215 0.49 -0.4
556,466 + MPMX19_04215 0.49 -0.2
556,466 + MPMX19_04215 0.49 +1.0
556,466 + MPMX19_04215 0.49 -0.1
556,466 + MPMX19_04215 0.49 -1.0
556,466 + MPMX19_04215 0.49 +0.2
556,466 + MPMX19_04215 0.49 -0.3
556,466 + MPMX19_04215 0.49 -0.6
556,466 + MPMX19_04215 0.49 -0.2
556,466 + MPMX19_04215 0.49 +0.1
556,466 + MPMX19_04215 0.49 -2.1
556,467 - MPMX19_04215 0.50 +0.0
556,467 - MPMX19_04215 0.50 +0.5
556,467 - MPMX19_04215 0.50 -1.2
556,467 - MPMX19_04215 0.50 +0.6
556,467 - MPMX19_04215 0.50 -0.8
556,467 - MPMX19_04215 0.50 -0.1
556,467 - MPMX19_04215 0.50 -1.2
556,467 - MPMX19_04215 0.50 -0.4
556,467 - MPMX19_04215 0.50 -0.3
556,467 - MPMX19_04215 0.50 -0.6
556,577 + MPMX19_04215 0.69 +0.5
556,577 + MPMX19_04215 0.69 -0.8
556,577 + MPMX19_04215 0.69 -0.2
556,577 + MPMX19_04215 0.69 -2.3
556,577 + MPMX19_04215 0.69 -0.1
556,577 + MPMX19_04215 0.69 +1.1
556,577 + MPMX19_04215 0.69 +0.2
556,577 + MPMX19_04215 0.69 +1.2
556,577 + MPMX19_04215 0.69 -2.3
556,577 + MPMX19_04215 0.69 +0.1
556,577 + MPMX19_04215 0.69 -0.9
556,578 - MPMX19_04215 0.69 -0.5
556,578 - MPMX19_04215 0.69 +0.6
556,578 - MPMX19_04215 0.69 +0.4
556,578 - MPMX19_04215 0.69 +0.0
556,578 - MPMX19_04215 0.69 -0.1
556,578 - MPMX19_04215 0.69 -0.2
556,578 - MPMX19_04215 0.69 +0.2
556,578 - MPMX19_04215 0.69 -1.5
556,578 - MPMX19_04215 0.69 +0.3
556,578 - MPMX19_04215 0.69 +1.6
556,578 - MPMX19_04215 0.69 -1.2
556,578 - MPMX19_04215 0.69 -0.7
556,578 - MPMX19_04215 0.69 -1.2
556,578 - MPMX19_04215 0.69 +0.0
556,578 - MPMX19_04215 0.69 -0.4
556,578 - MPMX19_04215 0.69 -1.0
556,578 - MPMX19_04215 0.69 +0.4
556,578 - MPMX19_04215 0.69 -1.8
556,578 - MPMX19_04215 0.69 -0.6
556,578 - MPMX19_04215 0.69 -0.4
557,136 + MPMX19_04217 0.16 -0.6
557,136 + MPMX19_04217 0.16 -1.2
557,137 - MPMX19_04217 0.16 +1.1
557,137 - MPMX19_04217 0.16 -0.2
557,137 - MPMX19_04217 0.16 -1.2
557,164 + MPMX19_04217 0.23 +1.6
557,164 + MPMX19_04217 0.23 -0.3
557,164 + MPMX19_04217 0.23 -0.4
557,165 - MPMX19_04217 0.23 -0.3
557,165 - MPMX19_04217 0.23 -0.7
557,165 - MPMX19_04217 0.23 +1.2
557,165 - MPMX19_04217 0.23 +0.9
557,165 - MPMX19_04217 0.23 +0.0
557,165 - MPMX19_04217 0.23 -0.9
557,165 - MPMX19_04217 0.23 -0.0
557,238 + MPMX19_04217 0.40 +1.6
557,238 + MPMX19_04217 0.40 +0.6
557,238 + MPMX19_04217 0.40 +0.0
557,238 + MPMX19_04217 0.40 +0.3
557,238 + MPMX19_04217 0.40 +0.6
557,238 + MPMX19_04217 0.40 -0.3
557,238 + MPMX19_04217 0.40 -0.9
557,238 + MPMX19_04217 0.40 -0.4
557,238 + MPMX19_04217 0.40 -1.7
557,238 + MPMX19_04217 0.40 +0.0
557,238 + MPMX19_04217 0.40 -1.2
557,238 + MPMX19_04217 0.40 -0.7
557,238 + MPMX19_04217 0.40 -0.4
557,239 - MPMX19_04217 0.40 -0.4
557,239 - MPMX19_04217 0.40 +0.0
557,239 - MPMX19_04217 0.40 +0.4
557,239 - MPMX19_04217 0.40 -0.3
557,250 + MPMX19_04217 0.43 -0.1
557,250 + MPMX19_04217 0.43 -1.0
557,250 + MPMX19_04217 0.43 +0.5
557,250 + MPMX19_04217 0.43 +0.3
557,250 + MPMX19_04217 0.43 +0.0
557,250 + MPMX19_04217 0.43 -0.1
557,251 - MPMX19_04217 0.43 -1.2
557,251 - MPMX19_04217 0.43 +0.1
557,251 - MPMX19_04217 0.43 -0.6
557,251 - MPMX19_04217 0.43 -1.6
557,325 + MPMX19_04217 0.60 +0.0
557,325 + MPMX19_04217 0.60 +0.4
557,325 + MPMX19_04217 0.60 +0.9
557,325 + MPMX19_04217 0.60 +1.3
557,325 + MPMX19_04217 0.60 +2.1
557,326 - MPMX19_04217 0.60 +0.0
557,326 - MPMX19_04217 0.60 -0.7
557,326 - MPMX19_04217 0.60 +1.3
557,326 - MPMX19_04217 0.60 +0.5
557,458 + +0.9
557,458 + +0.9
557,459 - -0.9
557,497 + -1.0
557,497 + +1.2
557,498 - +0.0
557,510 + -0.8
557,510 + -2.0
557,510 + -0.2
557,510 + -0.7
557,510 + -0.2
557,510 + +0.0
557,510 + +0.0
557,510 + -1.0
557,511 - -0.6
557,511 - -1.2
557,511 - +0.4
557,511 - -0.7
557,511 - +0.9
557,511 - -0.4
557,511 - -0.5
557,553 + -0.1
557,579 + -1.2
557,579 + -0.3
557,579 + -1.7
557,579 + +0.4
557,579 + +0.9
557,579 + -0.5
557,580 - -1.0
557,580 - -1.4
557,580 - -0.7
558,059 + MPMX19_04218 0.41 -1.4
558,059 + MPMX19_04218 0.41 -1.2
558,059 + MPMX19_04218 0.41 -0.7
558,059 + MPMX19_04218 0.41 -0.7
558,059 + MPMX19_04218 0.41 -0.8
558,060 - MPMX19_04218 0.41 -1.9
558,060 - MPMX19_04218 0.41 -2.5
558,060 - MPMX19_04218 0.41 -2.3
558,146 + MPMX19_04218 0.52 -1.6
558,146 + MPMX19_04218 0.52 -1.6
558,146 + MPMX19_04218 0.52 -1.6
558,146 + MPMX19_04218 0.52 -0.4
558,146 + MPMX19_04218 0.52 +0.2
558,146 + MPMX19_04218 0.52 -2.0
558,146 + MPMX19_04218 0.52 -0.6
558,146 + MPMX19_04218 0.52 -1.1
558,147 - MPMX19_04218 0.52 -0.5
558,147 - MPMX19_04218 0.52 -2.0
558,147 - MPMX19_04218 0.52 -0.6
558,147 - MPMX19_04218 0.52 -0.8
558,147 - MPMX19_04218 0.52 +0.4
558,147 - MPMX19_04218 0.52 -0.7
558,182 + MPMX19_04218 0.56 -1.2
558,182 + MPMX19_04218 0.56 -1.2
558,182 + MPMX19_04218 0.56 -2.0
558,182 + MPMX19_04218 0.56 -1.0
558,183 - MPMX19_04218 0.56 +0.3
558,183 - MPMX19_04218 0.56 -1.1
558,233 + MPMX19_04218 0.62 -0.9
558,233 + MPMX19_04218 0.62 -0.7
558,234 - MPMX19_04218 0.63 -1.1
558,234 - MPMX19_04218 0.63 -0.4
558,234 - MPMX19_04218 0.63 -1.5
558,240 + MPMX19_04218 0.63 -1.6
558,240 + MPMX19_04218 0.63 -2.2
558,240 + MPMX19_04218 0.63 -1.0
558,241 - MPMX19_04218 0.63 -1.6
558,241 - MPMX19_04218 0.63 -1.7

Or see this region's nucleotide sequence