Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04032 and MPMX19_04033 are separated by 460 nucleotides MPMX19_04033 and MPMX19_04034 overlap by 4 nucleotides
MPMX19_04032: MPMX19_04032 - hypothetical protein, at 329,333 to 329,869
_04032
MPMX19_04033: MPMX19_04033 - Colistin resistance protein EmrA, at 330,330 to 331,472
_04033
MPMX19_04034: MPMX19_04034 - Multidrug export protein EmrB, at 331,469 to 333,061
_04034
Position (kb) 330
331
332 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 329.334 kb on + strand at 329.334 kb on + strand at 329.334 kb on + strand at 329.334 kb on + strand at 329.481 kb on + strand, within MPMX19_04032 at 329.481 kb on + strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.940 kb on + strand at 329.956 kb on + strand at 329.956 kb on + strand at 329.957 kb on - strand at 329.957 kb on - strand at 329.957 kb on - strand at 329.957 kb on - strand at 329.957 kb on - strand at 329.957 kb on - strand at 329.960 kb on + strand at 329.960 kb on + strand at 330.000 kb on + strand at 330.000 kb on + strand at 330.037 kb on - strand at 330.054 kb on - strand at 330.069 kb on + strand at 330.069 kb on + strand at 330.069 kb on + strand at 330.070 kb on - strand at 330.079 kb on + strand at 330.080 kb on - strand at 330.325 kb on + strand at 330.325 kb on + strand at 330.325 kb on + strand at 330.325 kb on + strand at 330.325 kb on + strand at 330.326 kb on - strand at 330.326 kb on - strand at 330.519 kb on + strand, within MPMX19_04033 at 330.519 kb on + strand, within MPMX19_04033 at 330.519 kb on + strand, within MPMX19_04033 at 330.520 kb on - strand, within MPMX19_04033 at 330.520 kb on - strand, within MPMX19_04033 at 330.520 kb on - strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.549 kb on + strand, within MPMX19_04033 at 330.549 kb on + strand, within MPMX19_04033 at 330.615 kb on + strand, within MPMX19_04033 at 330.615 kb on + strand, within MPMX19_04033 at 330.615 kb on + strand, within MPMX19_04033 at 330.615 kb on + strand, within MPMX19_04033 at 330.616 kb on - strand, within MPMX19_04033 at 330.616 kb on - strand, within MPMX19_04033 at 330.616 kb on - strand, within MPMX19_04033 at 330.616 kb on - strand, within MPMX19_04033 at 330.757 kb on - strand, within MPMX19_04033 at 330.757 kb on - strand, within MPMX19_04033 at 330.757 kb on - strand, within MPMX19_04033 at 330.757 kb on - strand, within MPMX19_04033 at 330.757 kb on - strand, within MPMX19_04033 at 331.077 kb on + strand, within MPMX19_04033 at 331.077 kb on + strand, within MPMX19_04033 at 331.077 kb on + strand, within MPMX19_04033 at 331.077 kb on + strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.495 kb on + strand at 331.495 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.679 kb on + strand, within MPMX19_04034 at 331.680 kb on - strand, within MPMX19_04034 at 331.680 kb on - strand, within MPMX19_04034 at 331.680 kb on - strand, within MPMX19_04034 at 331.680 kb on - strand, within MPMX19_04034 at 331.733 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 332.423 kb on + strand, within MPMX19_04034 at 332.423 kb on + strand, within MPMX19_04034 at 332.423 kb on + strand, within MPMX19_04034 at 332.423 kb on + strand, within MPMX19_04034 at 332.423 kb on + strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.427 kb on - strand, within MPMX19_04034 at 332.427 kb on - strand, within MPMX19_04034 at 332.427 kb on - strand, within MPMX19_04034
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 329,334 + -0.6 329,334 + -0.4 329,334 + -1.5 329,334 + -1.0 329,481 + MPMX19_04032 0.28 +0.8 329,481 + MPMX19_04032 0.28 -0.0 329,482 - MPMX19_04032 0.28 -0.1 329,482 - MPMX19_04032 0.28 +1.4 329,482 - MPMX19_04032 0.28 -0.6 329,482 - MPMX19_04032 0.28 -0.3 329,482 - MPMX19_04032 0.28 -0.1 329,482 - MPMX19_04032 0.28 -0.6 329,493 + MPMX19_04032 0.30 +0.4 329,493 + MPMX19_04032 0.30 -0.6 329,493 + MPMX19_04032 0.30 -0.7 329,493 + MPMX19_04032 0.30 +0.4 329,493 + MPMX19_04032 0.30 -0.4 329,493 + MPMX19_04032 0.30 -1.0 329,493 + MPMX19_04032 0.30 +0.2 329,493 + MPMX19_04032 0.30 +0.2 329,493 + MPMX19_04032 0.30 +0.4 329,493 + MPMX19_04032 0.30 +0.4 329,493 + MPMX19_04032 0.30 -0.2 329,493 + MPMX19_04032 0.30 +0.6 329,493 + MPMX19_04032 0.30 +0.2 329,493 + MPMX19_04032 0.30 +0.5 329,493 + MPMX19_04032 0.30 -1.3 329,493 + MPMX19_04032 0.30 -0.7 329,494 - MPMX19_04032 0.30 -0.9 329,494 - MPMX19_04032 0.30 +0.6 329,494 - MPMX19_04032 0.30 -0.9 329,494 - MPMX19_04032 0.30 +0.3 329,494 - MPMX19_04032 0.30 +0.1 329,494 - MPMX19_04032 0.30 -0.4 329,494 - MPMX19_04032 0.30 -0.4 329,494 - MPMX19_04032 0.30 -0.4 329,494 - MPMX19_04032 0.30 +0.6 329,494 - MPMX19_04032 0.30 -0.3 329,494 - MPMX19_04032 0.30 +0.7 329,494 - MPMX19_04032 0.30 +0.5 329,494 - MPMX19_04032 0.30 -1.0 329,494 - MPMX19_04032 0.30 -1.0 329,494 - MPMX19_04032 0.30 -1.9 329,494 - MPMX19_04032 0.30 +0.4 329,940 + -0.1 329,956 + -0.9 329,956 + -1.4 329,957 - -0.8 329,957 - -0.9 329,957 - -0.0 329,957 - -0.2 329,957 - -0.6 329,957 - -0.9 329,960 + -0.0 329,960 + -0.1 330,000 + -0.7 330,000 + +0.9 330,037 - -0.3 330,054 - -0.1 330,069 + +0.1 330,069 + -0.4 330,069 + -1.7 330,070 - +1.1 330,079 + -0.6 330,080 - -0.4 330,325 + -1.1 330,325 + -1.1 330,325 + +0.1 330,325 + -0.5 330,325 + -0.5 330,326 - -1.7 330,326 - +0.9 330,519 + MPMX19_04033 0.17 -0.3 330,519 + MPMX19_04033 0.17 -0.6 330,519 + MPMX19_04033 0.17 +0.4 330,520 - MPMX19_04033 0.17 +0.7 330,520 - MPMX19_04033 0.17 -1.3 330,520 - MPMX19_04033 0.17 -0.4 330,525 + MPMX19_04033 0.17 -0.2 330,525 + MPMX19_04033 0.17 -0.0 330,525 + MPMX19_04033 0.17 -0.9 330,525 + MPMX19_04033 0.17 -0.4 330,525 + MPMX19_04033 0.17 -0.4 330,525 + MPMX19_04033 0.17 -0.0 330,526 - MPMX19_04033 0.17 -1.5 330,526 - MPMX19_04033 0.17 +0.4 330,526 - MPMX19_04033 0.17 -0.4 330,526 - MPMX19_04033 0.17 +0.6 330,526 - MPMX19_04033 0.17 -0.6 330,526 - MPMX19_04033 0.17 -0.2 330,526 - MPMX19_04033 0.17 +0.2 330,526 - MPMX19_04033 0.17 -0.6 330,526 - MPMX19_04033 0.17 -1.1 330,549 + MPMX19_04033 0.19 -0.1 330,549 + MPMX19_04033 0.19 -1.2 330,615 + MPMX19_04033 0.25 -0.3 330,615 + MPMX19_04033 0.25 +0.6 330,615 + MPMX19_04033 0.25 +0.3 330,615 + MPMX19_04033 0.25 -0.2 330,616 - MPMX19_04033 0.25 -0.9 330,616 - MPMX19_04033 0.25 -0.9 330,616 - MPMX19_04033 0.25 -0.3 330,616 - MPMX19_04033 0.25 -0.5 330,757 - MPMX19_04033 0.37 -0.8 330,757 - MPMX19_04033 0.37 -1.6 330,757 - MPMX19_04033 0.37 +0.3 330,757 - MPMX19_04033 0.37 -1.6 330,757 - MPMX19_04033 0.37 -0.8 331,077 + MPMX19_04033 0.65 -0.3 331,077 + MPMX19_04033 0.65 -0.3 331,077 + MPMX19_04033 0.65 +0.4 331,077 + MPMX19_04033 0.65 -0.7 331,078 - MPMX19_04033 0.65 -0.7 331,078 - MPMX19_04033 0.65 +0.6 331,078 - MPMX19_04033 0.65 -0.6 331,078 - MPMX19_04033 0.65 -1.4 331,078 - MPMX19_04033 0.65 +0.6 331,078 - MPMX19_04033 0.65 -0.6 331,078 - MPMX19_04033 0.65 -1.2 331,078 - MPMX19_04033 0.65 -1.9 331,362 + -1.2 331,362 + -0.7 331,362 + -1.5 331,362 + -1.3 331,362 + -0.0 331,362 + -1.6 331,362 + +0.6 331,362 + -1.9 331,362 + -0.0 331,362 + +0.7 331,362 + -0.5 331,362 + -0.8 331,362 + -0.6 331,362 + +0.3 331,362 + -0.0 331,362 + -1.5 331,362 + -0.2 331,362 + -0.0 331,362 + -0.0 331,362 + -0.6 331,362 + -1.1 331,362 + -0.6 331,362 + -0.6 331,362 + +0.8 331,362 + -0.6 331,362 + +0.4 331,362 + -1.9 331,362 + -0.8 331,362 + -1.7 331,362 + -2.1 331,362 + +0.2 331,362 + -1.2 331,363 - -0.4 331,363 - -0.0 331,363 - +0.3 331,363 - -1.6 331,363 - -0.7 331,363 - -0.9 331,363 - -0.5 331,363 - +0.1 331,363 - -1.2 331,363 - -0.4 331,363 - -0.6 331,363 - -1.4 331,363 - -1.1 331,363 - +0.6 331,363 - -0.7 331,363 - +0.1 331,363 - +0.7 331,363 - -0.8 331,363 - -0.3 331,363 - +0.5 331,363 - -0.3 331,363 - -0.2 331,363 - +1.0 331,363 - +0.5 331,363 - -1.6 331,363 - -1.2 331,363 - +0.6 331,363 - +0.6 331,363 - -2.1 331,363 - -0.7 331,363 - +1.6 331,363 - -0.4 331,363 - -0.3 331,363 - -0.9 331,363 - -0.6 331,495 + -0.7 331,495 + -0.6 331,622 + -0.2 331,622 + -0.0 331,622 + -0.4 331,622 + -1.3 331,622 + +0.2 331,622 + +0.5 331,622 + -0.1 331,622 + -0.4 331,622 + -0.2 331,623 - -0.0 331,623 - -0.3 331,623 - -2.7 331,623 - -0.2 331,623 - -0.8 331,623 - -1.3 331,623 - -0.2 331,623 - -0.9 331,623 - +0.7 331,623 - -1.2 331,623 - +0.4 331,623 - -2.5 331,623 - -0.5 331,623 - -0.2 331,623 - +1.1 331,679 + MPMX19_04034 0.13 -0.3 331,680 - MPMX19_04034 0.13 -1.9 331,680 - MPMX19_04034 0.13 -0.2 331,680 - MPMX19_04034 0.13 +0.9 331,680 - MPMX19_04034 0.13 -0.5 331,733 + MPMX19_04034 0.17 -1.1 331,751 + MPMX19_04034 0.18 +0.5 331,751 + MPMX19_04034 0.18 +0.8 331,751 + MPMX19_04034 0.18 -0.2 331,751 + MPMX19_04034 0.18 -0.4 331,751 + MPMX19_04034 0.18 -1.0 331,751 + MPMX19_04034 0.18 -0.7 331,751 + MPMX19_04034 0.18 -0.1 331,751 + MPMX19_04034 0.18 -1.5 331,751 + MPMX19_04034 0.18 -0.2 331,751 + MPMX19_04034 0.18 -1.0 331,751 + MPMX19_04034 0.18 +0.7 331,752 - MPMX19_04034 0.18 -1.2 331,752 - MPMX19_04034 0.18 -0.4 331,752 - MPMX19_04034 0.18 -1.5 331,752 - MPMX19_04034 0.18 +1.1 331,752 - MPMX19_04034 0.18 -1.0 331,752 - MPMX19_04034 0.18 -1.4 331,752 - MPMX19_04034 0.18 -2.2 332,423 + MPMX19_04034 0.60 -0.3 332,423 + MPMX19_04034 0.60 -1.1 332,423 + MPMX19_04034 0.60 -0.0 332,423 + MPMX19_04034 0.60 +0.1 332,423 + MPMX19_04034 0.60 -1.2 332,424 - MPMX19_04034 0.60 -0.1 332,424 - MPMX19_04034 0.60 -0.6 332,424 - MPMX19_04034 0.60 -1.6 332,424 - MPMX19_04034 0.60 -1.3 332,424 - MPMX19_04034 0.60 -0.4 332,424 - MPMX19_04034 0.60 -0.1 332,424 - MPMX19_04034 0.60 -1.2 332,424 - MPMX19_04034 0.60 +0.8 332,424 - MPMX19_04034 0.60 -0.7 332,424 - MPMX19_04034 0.60 +0.1 332,424 - MPMX19_04034 0.60 -1.0 332,424 - MPMX19_04034 0.60 +0.0 332,427 - MPMX19_04034 0.60 -0.1 332,427 - MPMX19_04034 0.60 -1.7 332,427 - MPMX19_04034 0.60 -3.2
Or see this region's nucleotide sequence