Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03939

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03938 and MPMX19_03939 are separated by 11 nucleotidesMPMX19_03939 and MPMX19_03940 are separated by 5 nucleotides MPMX19_03938: MPMX19_03938 - Methylmalonyl-CoA carboxyltransferase 12S subunit, at 219,189 to 220,796 _03938 MPMX19_03939: MPMX19_03939 - Enoyl-CoA-hydratase, at 220,808 to 221,590 _03939 MPMX19_03940: MPMX19_03940 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 221,596 to 223,599 _03940 Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1at 219.931 kb on - strand, within MPMX19_03938at 219.931 kb on - strand, within MPMX19_03938at 219.931 kb on - strand, within MPMX19_03938at 220.056 kb on + strand, within MPMX19_03938at 220.056 kb on + strand, within MPMX19_03938at 220.056 kb on + strand, within MPMX19_03938at 220.056 kb on + strand, within MPMX19_03938at 220.056 kb on + strand, within MPMX19_03938at 220.056 kb on + strand, within MPMX19_03938at 220.056 kb on + strand, within MPMX19_03938at 220.056 kb on + strand, within MPMX19_03938at 220.057 kb on - strand, within MPMX19_03938at 220.057 kb on - strand, within MPMX19_03938at 220.057 kb on - strand, within MPMX19_03938at 220.057 kb on - strand, within MPMX19_03938at 220.057 kb on - strand, within MPMX19_03938at 220.057 kb on - strand, within MPMX19_03938at 220.057 kb on - strand, within MPMX19_03938at 220.057 kb on - strand, within MPMX19_03938at 220.156 kb on - strand, within MPMX19_03938at 220.341 kb on + strand, within MPMX19_03938at 220.341 kb on + strand, within MPMX19_03938at 220.341 kb on + strand, within MPMX19_03938at 220.341 kb on + strand, within MPMX19_03938at 220.342 kb on - strand, within MPMX19_03938at 220.342 kb on - strand, within MPMX19_03938at 220.342 kb on - strand, within MPMX19_03938at 220.342 kb on - strand, within MPMX19_03938at 220.437 kb on + strand, within MPMX19_03938at 220.438 kb on - strand, within MPMX19_03938at 220.452 kb on + strand, within MPMX19_03938at 220.452 kb on + strand, within MPMX19_03938at 220.452 kb on + strand, within MPMX19_03938at 220.452 kb on + strand, within MPMX19_03938at 220.452 kb on + strand, within MPMX19_03938at 220.452 kb on + strand, within MPMX19_03938at 220.452 kb on + strand, within MPMX19_03938at 220.452 kb on + strand, within MPMX19_03938at 220.453 kb on - strand, within MPMX19_03938at 220.453 kb on - strand, within MPMX19_03938at 220.453 kb on - strand, within MPMX19_03938at 220.453 kb on - strand, within MPMX19_03938at 220.474 kb on - strand, within MPMX19_03938at 220.474 kb on - strand, within MPMX19_03938at 220.474 kb on - strand, within MPMX19_03938at 220.474 kb on - strand, within MPMX19_03938at 220.662 kb on + strandat 220.662 kb on + strandat 220.662 kb on + strandat 220.662 kb on + strandat 220.662 kb on + strandat 220.662 kb on + strandat 220.662 kb on + strandat 220.662 kb on + strandat 220.662 kb on + strandat 220.662 kb on + strandat 220.663 kb on - strandat 220.663 kb on - strandat 220.663 kb on - strandat 220.663 kb on - strandat 220.663 kb on - strandat 220.665 kb on + strandat 220.665 kb on + strandat 220.665 kb on + strandat 220.665 kb on + strandat 220.665 kb on + strandat 220.665 kb on + strandat 220.665 kb on + strandat 220.665 kb on + strandat 220.666 kb on - strandat 220.666 kb on - strandat 220.666 kb on - strandat 221.249 kb on + strand, within MPMX19_03939at 221.249 kb on + strand, within MPMX19_03939at 221.250 kb on - strand, within MPMX19_03939at 221.250 kb on - strand, within MPMX19_03939at 221.250 kb on - strand, within MPMX19_03939at 221.250 kb on - strand, within MPMX19_03939at 221.250 kb on - strand, within MPMX19_03939at 221.250 kb on - strand, within MPMX19_03939at 221.289 kb on - strand, within MPMX19_03939at 221.773 kb on + strandat 221.773 kb on + strandat 221.773 kb on + strandat 221.773 kb on + strandat 221.773 kb on + strandat 221.773 kb on + strandat 221.773 kb on + strandat 221.773 kb on + strandat 221.773 kb on + strandat 221.773 kb on + strandat 221.774 kb on - strandat 221.774 kb on - strandat 221.774 kb on - strandat 221.774 kb on - strandat 221.774 kb on - strandat 221.774 kb on - strandat 221.774 kb on - strandat 221.774 kb on - strandat 221.774 kb on - strandat 221.996 kb on - strand, within MPMX19_03940at 221.996 kb on - strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.199 kb on + strand, within MPMX19_03940at 222.200 kb on - strand, within MPMX19_03940at 222.262 kb on + strand, within MPMX19_03940at 222.262 kb on + strand, within MPMX19_03940at 222.262 kb on + strand, within MPMX19_03940at 222.262 kb on + strand, within MPMX19_03940at 222.262 kb on + strand, within MPMX19_03940at 222.262 kb on + strand, within MPMX19_03940at 222.263 kb on - strand, within MPMX19_03940at 222.263 kb on - strand, within MPMX19_03940at 222.263 kb on - strand, within MPMX19_03940at 222.263 kb on - strand, within MPMX19_03940at 222.263 kb on - strand, within MPMX19_03940at 222.263 kb on - strand, within MPMX19_03940at 222.263 kb on - strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.397 kb on + strand, within MPMX19_03940at 222.398 kb on - strand, within MPMX19_03940at 222.398 kb on - strand, within MPMX19_03940at 222.398 kb on - strand, within MPMX19_03940at 222.398 kb on - strand, within MPMX19_03940at 222.398 kb on - strand, within MPMX19_03940at 222.398 kb on - strand, within MPMX19_03940at 222.398 kb on - strand, within MPMX19_03940at 222.398 kb on - strand, within MPMX19_03940at 222.398 kb on - strand, within MPMX19_03940at 222.427 kb on + strand, within MPMX19_03940at 222.427 kb on + strand, within MPMX19_03940at 222.428 kb on - strand, within MPMX19_03940at 222.445 kb on + strand, within MPMX19_03940at 222.445 kb on + strand, within MPMX19_03940at 222.445 kb on + strand, within MPMX19_03940at 222.445 kb on + strand, within MPMX19_03940at 222.445 kb on + strand, within MPMX19_03940at 222.445 kb on + strand, within MPMX19_03940at 222.445 kb on + strand, within MPMX19_03940at 222.445 kb on + strand, within MPMX19_03940at 222.445 kb on + strand, within MPMX19_03940at 222.446 kb on - strand, within MPMX19_03940at 222.446 kb on - strand, within MPMX19_03940

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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219,931 - MPMX19_03938 0.46 +1.6
219,931 - MPMX19_03938 0.46 +0.7
219,931 - MPMX19_03938 0.46 +0.2
220,056 + MPMX19_03938 0.54 -0.6
220,056 + MPMX19_03938 0.54 -2.2
220,056 + MPMX19_03938 0.54 +0.2
220,056 + MPMX19_03938 0.54 -0.3
220,056 + MPMX19_03938 0.54 +0.3
220,056 + MPMX19_03938 0.54 -0.3
220,056 + MPMX19_03938 0.54 -0.4
220,056 + MPMX19_03938 0.54 +1.2
220,057 - MPMX19_03938 0.54 -0.1
220,057 - MPMX19_03938 0.54 +1.6
220,057 - MPMX19_03938 0.54 -0.6
220,057 - MPMX19_03938 0.54 +0.8
220,057 - MPMX19_03938 0.54 -0.9
220,057 - MPMX19_03938 0.54 -2.7
220,057 - MPMX19_03938 0.54 -1.0
220,057 - MPMX19_03938 0.54 -0.4
220,156 - MPMX19_03938 0.60 -0.7
220,341 + MPMX19_03938 0.72 -2.2
220,341 + MPMX19_03938 0.72 -1.1
220,341 + MPMX19_03938 0.72 -0.6
220,341 + MPMX19_03938 0.72 -1.4
220,342 - MPMX19_03938 0.72 -0.4
220,342 - MPMX19_03938 0.72 -1.9
220,342 - MPMX19_03938 0.72 +0.1
220,342 - MPMX19_03938 0.72 -1.0
220,437 + MPMX19_03938 0.78 +1.1
220,438 - MPMX19_03938 0.78 -1.0
220,452 + MPMX19_03938 0.79 -2.5
220,452 + MPMX19_03938 0.79 -0.5
220,452 + MPMX19_03938 0.79 +0.3
220,452 + MPMX19_03938 0.79 -0.3
220,452 + MPMX19_03938 0.79 -0.3
220,452 + MPMX19_03938 0.79 -0.4
220,452 + MPMX19_03938 0.79 -1.6
220,452 + MPMX19_03938 0.79 -1.4
220,453 - MPMX19_03938 0.79 -1.6
220,453 - MPMX19_03938 0.79 -1.2
220,453 - MPMX19_03938 0.79 -0.2
220,453 - MPMX19_03938 0.79 -0.0
220,474 - MPMX19_03938 0.80 +0.3
220,474 - MPMX19_03938 0.80 +0.3
220,474 - MPMX19_03938 0.80 +0.6
220,474 - MPMX19_03938 0.80 +1.3
220,662 + +1.1
220,662 + -1.7
220,662 + +1.4
220,662 + -2.3
220,662 + -0.4
220,662 + -0.7
220,662 + -0.2
220,662 + +0.1
220,662 + -0.2
220,662 + -0.5
220,663 - +0.4
220,663 - -0.7
220,663 - +0.3
220,663 - -0.4
220,663 - +1.6
220,665 + +0.7
220,665 + +1.6
220,665 + -1.1
220,665 + -0.9
220,665 + +0.2
220,665 + -1.6
220,665 + -0.2
220,665 + -2.0
220,666 - +1.1
220,666 - -0.1
220,666 - +0.2
221,249 + MPMX19_03939 0.56 -0.3
221,249 + MPMX19_03939 0.56 -0.2
221,250 - MPMX19_03939 0.56 -0.6
221,250 - MPMX19_03939 0.56 +0.2
221,250 - MPMX19_03939 0.56 -0.2
221,250 - MPMX19_03939 0.56 +0.3
221,250 - MPMX19_03939 0.56 -0.3
221,250 - MPMX19_03939 0.56 +1.6
221,289 - MPMX19_03939 0.61 +1.6
221,773 + -0.5
221,773 + -1.0
221,773 + +0.1
221,773 + -0.7
221,773 + -0.7
221,773 + -0.7
221,773 + -1.2
221,773 + -0.7
221,773 + -0.1
221,773 + +0.2
221,774 - +0.8
221,774 - -1.0
221,774 - -0.6
221,774 - -0.2
221,774 - -1.4
221,774 - -1.2
221,774 - -0.5
221,774 - +1.0
221,774 - -0.5
221,996 - MPMX19_03940 0.20 -1.6
221,996 - MPMX19_03940 0.20 -2.0
222,199 + MPMX19_03940 0.30 -1.0
222,199 + MPMX19_03940 0.30 -0.4
222,199 + MPMX19_03940 0.30 +0.1
222,199 + MPMX19_03940 0.30 -2.2
222,199 + MPMX19_03940 0.30 -0.0
222,199 + MPMX19_03940 0.30 -0.5
222,199 + MPMX19_03940 0.30 +0.8
222,199 + MPMX19_03940 0.30 -0.2
222,199 + MPMX19_03940 0.30 +0.2
222,199 + MPMX19_03940 0.30 -0.6
222,199 + MPMX19_03940 0.30 -1.5
222,199 + MPMX19_03940 0.30 -1.7
222,200 - MPMX19_03940 0.30 +0.6
222,262 + MPMX19_03940 0.33 -0.3
222,262 + MPMX19_03940 0.33 +0.2
222,262 + MPMX19_03940 0.33 -0.0
222,262 + MPMX19_03940 0.33 -1.8
222,262 + MPMX19_03940 0.33 -0.7
222,262 + MPMX19_03940 0.33 -0.4
222,263 - MPMX19_03940 0.33 -0.0
222,263 - MPMX19_03940 0.33 +0.5
222,263 - MPMX19_03940 0.33 +0.3
222,263 - MPMX19_03940 0.33 -2.4
222,263 - MPMX19_03940 0.33 -1.0
222,263 - MPMX19_03940 0.33 -0.5
222,263 - MPMX19_03940 0.33 +0.3
222,397 + MPMX19_03940 0.40 -1.9
222,397 + MPMX19_03940 0.40 -0.4
222,397 + MPMX19_03940 0.40 -0.5
222,397 + MPMX19_03940 0.40 -0.7
222,397 + MPMX19_03940 0.40 +0.5
222,397 + MPMX19_03940 0.40 -1.2
222,397 + MPMX19_03940 0.40 -0.1
222,397 + MPMX19_03940 0.40 +1.0
222,397 + MPMX19_03940 0.40 -0.0
222,397 + MPMX19_03940 0.40 -1.2
222,397 + MPMX19_03940 0.40 -0.5
222,397 + MPMX19_03940 0.40 +1.4
222,397 + MPMX19_03940 0.40 +0.3
222,397 + MPMX19_03940 0.40 -1.3
222,397 + MPMX19_03940 0.40 -2.0
222,397 + MPMX19_03940 0.40 -1.4
222,397 + MPMX19_03940 0.40 -0.7
222,397 + MPMX19_03940 0.40 -1.3
222,397 + MPMX19_03940 0.40 -0.6
222,397 + MPMX19_03940 0.40 -1.0
222,397 + MPMX19_03940 0.40 -0.7
222,397 + MPMX19_03940 0.40 -0.5
222,397 + MPMX19_03940 0.40 -0.2
222,397 + MPMX19_03940 0.40 -0.2
222,398 - MPMX19_03940 0.40 -0.3
222,398 - MPMX19_03940 0.40 -1.4
222,398 - MPMX19_03940 0.40 +0.4
222,398 - MPMX19_03940 0.40 +0.2
222,398 - MPMX19_03940 0.40 -0.5
222,398 - MPMX19_03940 0.40 -0.4
222,398 - MPMX19_03940 0.40 +0.8
222,398 - MPMX19_03940 0.40 -1.4
222,398 - MPMX19_03940 0.40 -0.2
222,427 + MPMX19_03940 0.41 -1.4
222,427 + MPMX19_03940 0.41 -0.1
222,428 - MPMX19_03940 0.42 -0.4
222,445 + MPMX19_03940 0.42 -0.2
222,445 + MPMX19_03940 0.42 +0.4
222,445 + MPMX19_03940 0.42 -0.1
222,445 + MPMX19_03940 0.42 +0.3
222,445 + MPMX19_03940 0.42 -1.6
222,445 + MPMX19_03940 0.42 +0.6
222,445 + MPMX19_03940 0.42 -1.0
222,445 + MPMX19_03940 0.42 -0.3
222,445 + MPMX19_03940 0.42 -0.5
222,446 - MPMX19_03940 0.42 -0.1
222,446 - MPMX19_03940 0.42 +0.2

Or see this region's nucleotide sequence