Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03451 and MPMX19_03452 are separated by 34 nucleotides MPMX19_03452 and MPMX19_03453 overlap by 1 nucleotides MPMX19_03453 and MPMX19_03454 are separated by 67 nucleotides
MPMX19_03451: MPMX19_03451 - hypothetical protein, at 846,888 to 849,251
_03451
MPMX19_03452: MPMX19_03452 - Putative aliphatic sulfonates transport permease protein SsuC, at 849,286 to 850,029
_03452
MPMX19_03453: MPMX19_03453 - Putative aliphatic sulfonates-binding protein, at 850,029 to 851,048
_03453
MPMX19_03454: MPMX19_03454 - Nitrate import ATP-binding protein NrtC, at 851,116 to 851,949
_03454
Position (kb) 850
851
852 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 849.280 kb on - strand at 849.280 kb on - strand at 849.540 kb on - strand, within MPMX19_03452 at 849.540 kb on - strand, within MPMX19_03452 at 849.540 kb on - strand, within MPMX19_03452 at 849.540 kb on - strand, within MPMX19_03452 at 849.837 kb on + strand, within MPMX19_03452 at 849.837 kb on + strand, within MPMX19_03452 at 849.837 kb on + strand, within MPMX19_03452 at 849.838 kb on - strand, within MPMX19_03452 at 849.838 kb on - strand, within MPMX19_03452 at 849.948 kb on - strand, within MPMX19_03452 at 849.948 kb on - strand, within MPMX19_03452 at 849.948 kb on - strand, within MPMX19_03452 at 850.013 kb on + strand at 850.052 kb on - strand at 850.052 kb on - strand at 850.052 kb on - strand at 850.052 kb on - strand at 850.052 kb on - strand at 850.052 kb on - strand at 850.221 kb on - strand, within MPMX19_03453 at 850.353 kb on - strand, within MPMX19_03453 at 850.388 kb on - strand, within MPMX19_03453 at 850.388 kb on - strand, within MPMX19_03453 at 850.388 kb on - strand, within MPMX19_03453 at 850.709 kb on - strand, within MPMX19_03453 at 850.709 kb on - strand, within MPMX19_03453 at 850.760 kb on - strand, within MPMX19_03453 at 850.760 kb on - strand, within MPMX19_03453 at 850.779 kb on - strand, within MPMX19_03453 at 850.779 kb on - strand, within MPMX19_03453 at 850.874 kb on - strand, within MPMX19_03453 at 850.874 kb on - strand, within MPMX19_03453 at 850.874 kb on - strand, within MPMX19_03453 at 850.874 kb on - strand, within MPMX19_03453 at 851.008 kb on + strand at 851.008 kb on + strand at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.652 kb on - strand, within MPMX19_03454 at 851.652 kb on - strand, within MPMX19_03454 at 851.652 kb on - strand, within MPMX19_03454 at 851.843 kb on + strand, within MPMX19_03454 at 851.843 kb on + strand, within MPMX19_03454 at 851.843 kb on + strand, within MPMX19_03454 at 851.844 kb on - strand, within MPMX19_03454
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 849,280 - -1.4 849,280 - +0.7 849,540 - MPMX19_03452 0.34 -3.0 849,540 - MPMX19_03452 0.34 -1.0 849,540 - MPMX19_03452 0.34 +0.7 849,540 - MPMX19_03452 0.34 +0.4 849,837 + MPMX19_03452 0.74 -1.5 849,837 + MPMX19_03452 0.74 +0.2 849,837 + MPMX19_03452 0.74 -0.7 849,838 - MPMX19_03452 0.74 +0.0 849,838 - MPMX19_03452 0.74 -0.9 849,948 - MPMX19_03452 0.89 -0.1 849,948 - MPMX19_03452 0.89 -0.3 849,948 - MPMX19_03452 0.89 +0.7 850,013 + -0.7 850,052 - +0.3 850,052 - -0.3 850,052 - +0.2 850,052 - -1.0 850,052 - -0.4 850,052 - -1.1 850,221 - MPMX19_03453 0.19 -1.8 850,353 - MPMX19_03453 0.32 -2.1 850,388 - MPMX19_03453 0.35 -0.3 850,388 - MPMX19_03453 0.35 -1.6 850,388 - MPMX19_03453 0.35 -1.9 850,709 - MPMX19_03453 0.67 -1.5 850,709 - MPMX19_03453 0.67 -0.3 850,760 - MPMX19_03453 0.72 -0.7 850,760 - MPMX19_03453 0.72 -0.0 850,779 - MPMX19_03453 0.74 -0.9 850,779 - MPMX19_03453 0.74 -0.7 850,874 - MPMX19_03453 0.83 -0.4 850,874 - MPMX19_03453 0.83 -0.8 850,874 - MPMX19_03453 0.83 +0.2 850,874 - MPMX19_03453 0.83 -1.1 851,008 + -0.1 851,008 + +0.7 851,651 + MPMX19_03454 0.64 +0.7 851,651 + MPMX19_03454 0.64 +1.1 851,651 + MPMX19_03454 0.64 +0.1 851,651 + MPMX19_03454 0.64 -0.7 851,651 + MPMX19_03454 0.64 -0.3 851,651 + MPMX19_03454 0.64 +0.3 851,652 - MPMX19_03454 0.64 -2.3 851,652 - MPMX19_03454 0.64 -0.9 851,652 - MPMX19_03454 0.64 -0.2 851,843 + MPMX19_03454 0.87 +0.2 851,843 + MPMX19_03454 0.87 +0.1 851,843 + MPMX19_03454 0.87 -0.5 851,844 - MPMX19_03454 0.87 -0.7
Or see this region's nucleotide sequence