Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03436 and MPMX19_03437 are separated by 30 nucleotides MPMX19_03437 and MPMX19_03438 are separated by 7 nucleotides MPMX19_03438 and MPMX19_03439 overlap by 4 nucleotides
MPMX19_03436: MPMX19_03436 - hypothetical protein, at 828,279 to 832,529
_03436
MPMX19_03437: MPMX19_03437 - hypothetical protein, at 832,560 to 833,678
_03437
MPMX19_03438: MPMX19_03438 - hypothetical protein, at 833,686 to 834,279
_03438
MPMX19_03439: MPMX19_03439 - hypothetical protein, at 834,276 to 834,860
_03439
Position (kb) 832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 831.579 kb on + strand, within MPMX19_03436 at 831.580 kb on - strand, within MPMX19_03436 at 831.580 kb on - strand, within MPMX19_03436 at 831.840 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 832.031 kb on + strand, within MPMX19_03436 at 832.032 kb on - strand, within MPMX19_03436 at 832.524 kb on + strand at 832.524 kb on + strand at 832.525 kb on - strand at 832.525 kb on - strand at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.116 kb on - strand, within MPMX19_03437 at 833.116 kb on - strand, within MPMX19_03437 at 833.116 kb on - strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.194 kb on - strand, within MPMX19_03437 at 833.194 kb on - strand, within MPMX19_03437 at 833.194 kb on - strand, within MPMX19_03437 at 833.194 kb on - strand, within MPMX19_03437 at 833.494 kb on - strand, within MPMX19_03437 at 833.521 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.607 kb on + strand at 833.607 kb on + strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.704 kb on + strand at 833.705 kb on - strand at 833.741 kb on - strand at 833.741 kb on - strand at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.846 kb on - strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.131 kb on - strand, within MPMX19_03438 at 834.131 kb on - strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.220 kb on + strand at 834.220 kb on + strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.294 kb on - strand at 834.294 kb on - strand at 834.411 kb on + strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 831,579 + MPMX19_03436 0.78 +0.4 831,580 - MPMX19_03436 0.78 +1.2 831,580 - MPMX19_03436 0.78 -1.5 831,840 + MPMX19_03436 0.84 -1.6 831,954 + MPMX19_03436 0.86 +0.4 831,954 + MPMX19_03436 0.86 +0.1 831,954 + MPMX19_03436 0.86 -0.5 831,954 + MPMX19_03436 0.86 +0.1 831,954 + MPMX19_03436 0.86 -1.0 831,954 + MPMX19_03436 0.86 -0.8 831,954 + MPMX19_03436 0.86 +0.9 831,954 + MPMX19_03436 0.86 -1.1 831,955 - MPMX19_03436 0.86 -1.7 831,955 - MPMX19_03436 0.86 +0.4 831,955 - MPMX19_03436 0.86 -0.0 831,955 - MPMX19_03436 0.86 -1.5 831,955 - MPMX19_03436 0.86 -1.7 831,955 - MPMX19_03436 0.86 +0.7 831,955 - MPMX19_03436 0.86 -0.4 831,955 - MPMX19_03436 0.86 -0.9 832,031 + MPMX19_03436 0.88 +2.2 832,032 - MPMX19_03436 0.88 -1.1 832,524 + -0.3 832,524 + -0.3 832,525 - -0.3 832,525 - -1.1 833,115 + MPMX19_03437 0.50 -0.5 833,115 + MPMX19_03437 0.50 -0.5 833,115 + MPMX19_03437 0.50 -0.1 833,115 + MPMX19_03437 0.50 -0.7 833,115 + MPMX19_03437 0.50 +0.2 833,115 + MPMX19_03437 0.50 -0.6 833,115 + MPMX19_03437 0.50 +1.1 833,116 - MPMX19_03437 0.50 +0.5 833,116 - MPMX19_03437 0.50 -0.5 833,116 - MPMX19_03437 0.50 -0.1 833,193 + MPMX19_03437 0.57 +0.3 833,193 + MPMX19_03437 0.57 -1.1 833,193 + MPMX19_03437 0.57 -1.2 833,193 + MPMX19_03437 0.57 -1.9 833,193 + MPMX19_03437 0.57 -2.3 833,193 + MPMX19_03437 0.57 -0.3 833,193 + MPMX19_03437 0.57 -0.8 833,193 + MPMX19_03437 0.57 -0.2 833,194 - MPMX19_03437 0.57 -1.8 833,194 - MPMX19_03437 0.57 -0.1 833,194 - MPMX19_03437 0.57 -1.1 833,194 - MPMX19_03437 0.57 -0.2 833,494 - MPMX19_03437 0.83 -0.0 833,521 - MPMX19_03437 0.86 -0.5 833,557 - MPMX19_03437 0.89 +1.2 833,557 - MPMX19_03437 0.89 -0.6 833,557 - MPMX19_03437 0.89 -0.5 833,607 + -0.1 833,607 + -2.0 833,608 - -0.1 833,608 - +1.1 833,608 - -1.1 833,608 - -2.1 833,704 + -0.3 833,705 - -0.9 833,741 - -1.7 833,741 - -0.6 833,836 + MPMX19_03438 0.25 +0.5 833,836 + MPMX19_03438 0.25 -1.3 833,836 + MPMX19_03438 0.25 -0.5 833,836 + MPMX19_03438 0.25 +0.3 833,837 - MPMX19_03438 0.25 -1.3 833,837 - MPMX19_03438 0.25 -1.5 833,837 - MPMX19_03438 0.25 +0.0 833,837 - MPMX19_03438 0.25 -0.4 833,846 - MPMX19_03438 0.27 +0.5 833,872 + MPMX19_03438 0.31 +0.7 833,872 + MPMX19_03438 0.31 +0.9 833,872 + MPMX19_03438 0.31 -1.1 833,872 + MPMX19_03438 0.31 +0.7 833,873 - MPMX19_03438 0.31 +1.1 833,873 - MPMX19_03438 0.31 -3.2 833,873 - MPMX19_03438 0.31 -0.2 833,873 - MPMX19_03438 0.31 -0.9 833,873 - MPMX19_03438 0.31 -0.2 833,873 - MPMX19_03438 0.31 -0.3 833,873 - MPMX19_03438 0.31 -1.8 834,013 + MPMX19_03438 0.55 +0.2 834,013 + MPMX19_03438 0.55 -0.8 834,013 + MPMX19_03438 0.55 -1.1 834,013 + MPMX19_03438 0.55 -0.0 834,013 + MPMX19_03438 0.55 -2.0 834,014 - MPMX19_03438 0.55 +0.1 834,014 - MPMX19_03438 0.55 +0.3 834,014 - MPMX19_03438 0.55 +1.0 834,014 - MPMX19_03438 0.55 -1.1 834,014 - MPMX19_03438 0.55 -0.0 834,014 - MPMX19_03438 0.55 -1.5 834,014 - MPMX19_03438 0.55 -0.4 834,130 + MPMX19_03438 0.75 -0.0 834,130 + MPMX19_03438 0.75 -1.0 834,130 + MPMX19_03438 0.75 -1.9 834,131 - MPMX19_03438 0.75 +1.1 834,131 - MPMX19_03438 0.75 -0.4 834,211 + MPMX19_03438 0.88 -1.8 834,211 + MPMX19_03438 0.88 +0.2 834,211 + MPMX19_03438 0.88 -0.9 834,211 + MPMX19_03438 0.88 -1.7 834,211 + MPMX19_03438 0.88 +0.9 834,211 + MPMX19_03438 0.88 +0.9 834,211 + MPMX19_03438 0.88 +0.4 834,211 + MPMX19_03438 0.88 -1.1 834,211 + MPMX19_03438 0.88 +0.1 834,211 + MPMX19_03438 0.88 -0.8 834,212 - MPMX19_03438 0.89 -1.1 834,212 - MPMX19_03438 0.89 +0.7 834,212 - MPMX19_03438 0.89 -0.7 834,220 + -0.8 834,220 + -2.1 834,221 - -0.0 834,221 - -2.5 834,221 - -0.2 834,221 - -0.5 834,290 + +0.9 834,290 + +1.1 834,290 + -0.1 834,290 + +0.1 834,290 + +0.7 834,291 - +1.0 834,291 - +1.3 834,291 - -0.7 834,291 - -0.4 834,291 - +0.2 834,293 + -0.1 834,293 + -0.3 834,293 + +0.1 834,293 + -0.1 834,293 + -2.0 834,293 + +0.2 834,293 + -1.2 834,293 + +0.1 834,293 + +0.4 834,294 - -1.0 834,294 - +0.4 834,411 + MPMX19_03439 0.23 +0.3 834,412 - MPMX19_03439 0.23 -1.0 834,412 - MPMX19_03439 0.23 -0.2 834,412 - MPMX19_03439 0.23 -0.9
Or see this region's nucleotide sequence