Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03081

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03080 and MPMX19_03081 are separated by 147 nucleotidesMPMX19_03081 and MPMX19_03082 are separated by 87 nucleotidesMPMX19_03082 and MPMX19_03083 are separated by 235 nucleotides MPMX19_03080: MPMX19_03080 - Ferrichrome receptor FcuA, at 347,515 to 349,992 _03080 MPMX19_03081: MPMX19_03081 - Protein FecR, at 350,140 to 351,195 _03081 MPMX19_03082: MPMX19_03082 - ECF RNA polymerase sigma factor SigE, at 351,283 to 351,807 _03082 MPMX19_03083: MPMX19_03083 - hypothetical protein, at 352,043 to 352,249 _03083 Position (kb) 350 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1at 349.268 kb on + strand, within MPMX19_03080at 349.268 kb on + strand, within MPMX19_03080at 349.269 kb on - strand, within MPMX19_03080at 349.269 kb on - strand, within MPMX19_03080at 349.269 kb on - strand, within MPMX19_03080at 349.431 kb on - strand, within MPMX19_03080at 349.431 kb on - strand, within MPMX19_03080at 350.007 kb on - strandat 350.799 kb on - strand, within MPMX19_03081at 350.799 kb on - strand, within MPMX19_03081at 350.799 kb on - strand, within MPMX19_03081at 350.921 kb on + strand, within MPMX19_03081at 350.922 kb on - strand, within MPMX19_03081at 350.922 kb on - strand, within MPMX19_03081at 350.922 kb on - strand, within MPMX19_03081at 351.214 kb on + strandat 351.214 kb on + strandat 351.215 kb on - strandat 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.345 kb on - strand, within MPMX19_03082at 351.345 kb on - strand, within MPMX19_03082at 351.392 kb on + strand, within MPMX19_03082at 351.393 kb on - strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.614 kb on + strand, within MPMX19_03082at 351.614 kb on + strand, within MPMX19_03082at 351.614 kb on + strand, within MPMX19_03082at 351.614 kb on + strand, within MPMX19_03082at 351.614 kb on + strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.789 kb on + strandat 351.789 kb on + strandat 351.790 kb on - strandat 351.790 kb on - strandat 351.790 kb on - strandat 351.790 kb on - strandat 351.790 kb on - strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.939 kb on - strandat 351.953 kb on + strandat 351.972 kb on - strandat 352.167 kb on + strand, within MPMX19_03083at 352.167 kb on + strand, within MPMX19_03083at 352.167 kb on + strand, within MPMX19_03083at 352.167 kb on + strand, within MPMX19_03083at 352.168 kb on - strand, within MPMX19_03083at 352.168 kb on - strand, within MPMX19_03083at 352.168 kb on - strand, within MPMX19_03083at 352.168 kb on - strand, within MPMX19_03083at 352.168 kb on - strand, within MPMX19_03083

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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349,268 + MPMX19_03080 0.71 +0.7
349,268 + MPMX19_03080 0.71 -0.2
349,269 - MPMX19_03080 0.71 -0.7
349,269 - MPMX19_03080 0.71 +1.4
349,269 - MPMX19_03080 0.71 +0.3
349,431 - MPMX19_03080 0.77 -0.3
349,431 - MPMX19_03080 0.77 -0.1
350,007 - -1.3
350,799 - MPMX19_03081 0.62 +0.2
350,799 - MPMX19_03081 0.62 -0.6
350,799 - MPMX19_03081 0.62 +1.3
350,921 + MPMX19_03081 0.74 +0.6
350,922 - MPMX19_03081 0.74 -1.3
350,922 - MPMX19_03081 0.74 -1.1
350,922 - MPMX19_03081 0.74 -0.8
351,214 + +0.5
351,214 + -1.0
351,215 - -0.5
351,344 + MPMX19_03082 0.12 -0.4
351,344 + MPMX19_03082 0.12 -0.1
351,344 + MPMX19_03082 0.12 -0.3
351,344 + MPMX19_03082 0.12 -0.3
351,344 + MPMX19_03082 0.12 -1.5
351,344 + MPMX19_03082 0.12 +0.3
351,344 + MPMX19_03082 0.12 -0.1
351,345 - MPMX19_03082 0.12 +0.1
351,345 - MPMX19_03082 0.12 -0.3
351,392 + MPMX19_03082 0.21 -2.5
351,393 - MPMX19_03082 0.21 -0.7
351,413 + MPMX19_03082 0.25 +0.2
351,413 + MPMX19_03082 0.25 +0.7
351,413 + MPMX19_03082 0.25 -0.9
351,413 + MPMX19_03082 0.25 -0.5
351,413 + MPMX19_03082 0.25 +0.2
351,413 + MPMX19_03082 0.25 -1.4
351,413 + MPMX19_03082 0.25 +0.2
351,413 + MPMX19_03082 0.25 +0.6
351,413 + MPMX19_03082 0.25 -1.5
351,413 + MPMX19_03082 0.25 -1.4
351,413 + MPMX19_03082 0.25 -0.8
351,414 - MPMX19_03082 0.25 -1.4
351,414 - MPMX19_03082 0.25 +0.6
351,414 - MPMX19_03082 0.25 +0.3
351,414 - MPMX19_03082 0.25 -0.6
351,414 - MPMX19_03082 0.25 +0.1
351,414 - MPMX19_03082 0.25 -0.1
351,414 - MPMX19_03082 0.25 -0.3
351,614 + MPMX19_03082 0.63 -2.3
351,614 + MPMX19_03082 0.63 -0.1
351,614 + MPMX19_03082 0.63 -0.3
351,614 + MPMX19_03082 0.63 -0.1
351,614 + MPMX19_03082 0.63 +0.1
351,615 - MPMX19_03082 0.63 -2.8
351,615 - MPMX19_03082 0.63 -0.8
351,615 - MPMX19_03082 0.63 +0.5
351,615 - MPMX19_03082 0.63 -0.1
351,615 - MPMX19_03082 0.63 +0.1
351,615 - MPMX19_03082 0.63 +0.9
351,615 - MPMX19_03082 0.63 -0.9
351,615 - MPMX19_03082 0.63 -1.5
351,615 - MPMX19_03082 0.63 -1.2
351,789 + +0.4
351,789 + +1.1
351,790 - +0.1
351,790 - +0.5
351,790 - -1.2
351,790 - -2.8
351,790 - -0.3
351,936 + -2.1
351,936 + -0.8
351,936 + +0.1
351,936 + +0.5
351,936 + +0.8
351,936 + -0.8
351,936 + -1.0
351,939 - +0.4
351,953 + -0.9
351,972 - -0.0
352,167 + MPMX19_03083 0.60 +0.6
352,167 + MPMX19_03083 0.60 -1.3
352,167 + MPMX19_03083 0.60 -0.3
352,167 + MPMX19_03083 0.60 -0.4
352,168 - MPMX19_03083 0.60 -0.4
352,168 - MPMX19_03083 0.60 -0.5
352,168 - MPMX19_03083 0.60 -1.1
352,168 - MPMX19_03083 0.60 -0.9
352,168 - MPMX19_03083 0.60 -1.0

Or see this region's nucleotide sequence