Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02881

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02880 and MPMX19_02881 are separated by 13 nucleotidesMPMX19_02881 and MPMX19_02882 are separated by 109 nucleotides MPMX19_02880: MPMX19_02880 - hypothetical protein, at 130,552 to 131,658 _02880 MPMX19_02881: MPMX19_02881 - hypothetical protein, at 131,672 to 132,157 _02881 MPMX19_02882: MPMX19_02882 - Threonine/homoserine exporter RhtA, at 132,267 to 133,157 _02882 Position (kb) 131 132 133Strain fitness (log2 ratio) -2 -1 0 1 2at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 131.638 kb on + strandat 131.673 kb on + strandat 131.778 kb on + strand, within MPMX19_02881at 131.778 kb on + strand, within MPMX19_02881at 131.779 kb on - strand, within MPMX19_02881at 131.779 kb on - strand, within MPMX19_02881at 131.779 kb on - strand, within MPMX19_02881at 131.838 kb on + strand, within MPMX19_02881at 131.838 kb on + strand, within MPMX19_02881at 131.838 kb on + strand, within MPMX19_02881at 131.838 kb on + strand, within MPMX19_02881at 131.839 kb on - strand, within MPMX19_02881at 131.839 kb on - strand, within MPMX19_02881at 131.839 kb on - strand, within MPMX19_02881at 131.839 kb on - strand, within MPMX19_02881at 131.839 kb on - strand, within MPMX19_02881at 131.839 kb on - strand, within MPMX19_02881at 131.839 kb on - strand, within MPMX19_02881at 132.200 kb on + strandat 132.227 kb on + strandat 132.227 kb on + strandat 132.228 kb on - strandat 132.228 kb on - strandat 132.250 kb on + strandat 132.250 kb on + strandat 132.251 kb on - strandat 132.251 kb on - strandat 132.251 kb on - strandat 132.266 kb on + strandat 132.266 kb on + strandat 132.267 kb on - strandat 132.267 kb on - strandat 132.267 kb on - strandat 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.361 kb on - strand, within MPMX19_02882at 132.361 kb on - strand, within MPMX19_02882at 132.361 kb on - strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.517 kb on - strand, within MPMX19_02882at 132.553 kb on - strand, within MPMX19_02882at 132.741 kb on + strand, within MPMX19_02882at 132.741 kb on + strand, within MPMX19_02882at 132.741 kb on + strand, within MPMX19_02882at 132.742 kb on - strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.776 kb on + strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.954 kb on + strand, within MPMX19_02882at 132.954 kb on + strand, within MPMX19_02882at 132.955 kb on - strand, within MPMX19_02882at 132.955 kb on - strand, within MPMX19_02882at 133.155 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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130,693 + MPMX19_02880 0.13 +0.2
130,693 + MPMX19_02880 0.13 -1.7
130,693 + MPMX19_02880 0.13 -0.5
130,693 + MPMX19_02880 0.13 -1.2
130,693 + MPMX19_02880 0.13 -0.3
130,693 + MPMX19_02880 0.13 +0.7
130,693 + MPMX19_02880 0.13 +0.8
130,693 + MPMX19_02880 0.13 -0.2
130,693 + MPMX19_02880 0.13 -0.1
130,693 + MPMX19_02880 0.13 +0.7
130,693 + MPMX19_02880 0.13 -0.1
130,693 + MPMX19_02880 0.13 +0.3
130,693 + MPMX19_02880 0.13 -0.3
130,694 - MPMX19_02880 0.13 -0.2
130,694 - MPMX19_02880 0.13 -0.7
130,694 - MPMX19_02880 0.13 -0.8
130,694 - MPMX19_02880 0.13 -1.1
130,694 - MPMX19_02880 0.13 -1.7
130,694 - MPMX19_02880 0.13 -0.0
130,694 - MPMX19_02880 0.13 +0.6
130,694 - MPMX19_02880 0.13 +0.1
130,694 - MPMX19_02880 0.13 -0.0
130,694 - MPMX19_02880 0.13 -0.9
130,694 - MPMX19_02880 0.13 -0.8
131,638 + -0.5
131,673 + -0.4
131,778 + MPMX19_02881 0.22 -1.1
131,778 + MPMX19_02881 0.22 -1.0
131,779 - MPMX19_02881 0.22 -0.7
131,779 - MPMX19_02881 0.22 -0.3
131,779 - MPMX19_02881 0.22 -1.9
131,838 + MPMX19_02881 0.34 -0.3
131,838 + MPMX19_02881 0.34 -1.4
131,838 + MPMX19_02881 0.34 +0.2
131,838 + MPMX19_02881 0.34 -1.3
131,839 - MPMX19_02881 0.34 -0.9
131,839 - MPMX19_02881 0.34 -1.2
131,839 - MPMX19_02881 0.34 -0.8
131,839 - MPMX19_02881 0.34 -1.0
131,839 - MPMX19_02881 0.34 -1.5
131,839 - MPMX19_02881 0.34 +0.1
131,839 - MPMX19_02881 0.34 -1.5
132,200 + +0.1
132,227 + -1.1
132,227 + -0.5
132,228 - -0.3
132,228 - -2.0
132,250 + -1.3
132,250 + -0.1
132,251 - -1.1
132,251 - -0.6
132,251 - -0.7
132,266 + -0.2
132,266 + +1.3
132,267 - -0.9
132,267 - -0.2
132,267 - +0.8
132,360 + MPMX19_02882 0.10 -0.8
132,360 + MPMX19_02882 0.10 -0.2
132,360 + MPMX19_02882 0.10 +0.3
132,360 + MPMX19_02882 0.10 -0.1
132,360 + MPMX19_02882 0.10 -0.8
132,360 + MPMX19_02882 0.10 +0.1
132,360 + MPMX19_02882 0.10 -0.9
132,361 - MPMX19_02882 0.11 -2.6
132,361 - MPMX19_02882 0.11 -0.4
132,361 - MPMX19_02882 0.11 +2.1
132,516 + MPMX19_02882 0.28 -1.8
132,516 + MPMX19_02882 0.28 +1.1
132,516 + MPMX19_02882 0.28 -0.9
132,516 + MPMX19_02882 0.28 -0.1
132,516 + MPMX19_02882 0.28 -0.5
132,517 - MPMX19_02882 0.28 +0.1
132,553 - MPMX19_02882 0.32 -1.2
132,741 + MPMX19_02882 0.53 -1.2
132,741 + MPMX19_02882 0.53 -1.0
132,741 + MPMX19_02882 0.53 -0.7
132,742 - MPMX19_02882 0.53 +1.3
132,774 + MPMX19_02882 0.57 -0.4
132,774 + MPMX19_02882 0.57 +0.0
132,774 + MPMX19_02882 0.57 -0.1
132,774 + MPMX19_02882 0.57 +0.1
132,774 + MPMX19_02882 0.57 +0.1
132,774 + MPMX19_02882 0.57 -1.7
132,774 + MPMX19_02882 0.57 -1.1
132,774 + MPMX19_02882 0.57 -1.2
132,774 + MPMX19_02882 0.57 -0.3
132,775 - MPMX19_02882 0.57 -0.3
132,775 - MPMX19_02882 0.57 -0.7
132,775 - MPMX19_02882 0.57 -0.1
132,775 - MPMX19_02882 0.57 -1.9
132,775 - MPMX19_02882 0.57 +0.4
132,775 - MPMX19_02882 0.57 +0.5
132,775 - MPMX19_02882 0.57 +1.2
132,775 - MPMX19_02882 0.57 -0.5
132,775 - MPMX19_02882 0.57 +0.4
132,775 - MPMX19_02882 0.57 -1.8
132,775 - MPMX19_02882 0.57 -0.7
132,776 + MPMX19_02882 0.57 -1.8
132,777 - MPMX19_02882 0.57 +0.1
132,777 - MPMX19_02882 0.57 +0.2
132,777 - MPMX19_02882 0.57 +0.5
132,777 - MPMX19_02882 0.57 +1.7
132,954 + MPMX19_02882 0.77 -0.8
132,954 + MPMX19_02882 0.77 +0.5
132,955 - MPMX19_02882 0.77 +0.1
132,955 - MPMX19_02882 0.77 -0.1
133,155 + -0.4

Or see this region's nucleotide sequence