Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01860

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
1,937,499	-		MPMX19_01859	0.55	-0.8
1,937,499	-		MPMX19_01859	0.55	-1.0
1,937,499	-		MPMX19_01859	0.55	-0.6
1,937,499	-		MPMX19_01859	0.55	-0.9
1,937,585	+		MPMX19_01859	0.59	+0.3
1,937,585	+		MPMX19_01859	0.59	+1.0
1,937,585	+		MPMX19_01859	0.59	+0.4
1,937,586	-		MPMX19_01859	0.59	-0.2
1,937,586	-		MPMX19_01859	0.59	-0.6
1,937,586	-		MPMX19_01859	0.59	-0.9
1,937,586	-		MPMX19_01859	0.59	+2.1
1,937,586	-		MPMX19_01859	0.59	+0.4
1,937,586	-		MPMX19_01859	0.59	-0.6
1,937,586	-		MPMX19_01859	0.59	-0.3
1,937,918	+		MPMX19_01859	0.74	-1.8
1,937,918	+		MPMX19_01859	0.74	+0.5
1,937,918	+		MPMX19_01859	0.74	-1.2
1,937,918	+		MPMX19_01859	0.74	+0.2
1,937,918	+		MPMX19_01859	0.74	+1.3
1,937,918	+		MPMX19_01859	0.74	-0.3
1,937,918	+		MPMX19_01859	0.74	+1.0
1,937,918	+		MPMX19_01859	0.74	-1.5
1,937,918	+		MPMX19_01859	0.74	-2.6
1,937,918	+		MPMX19_01859	0.74	-1.3
1,937,918	+		MPMX19_01859	0.74	-1.9
1,937,918	+		MPMX19_01859	0.74	-0.7
1,937,918	+		MPMX19_01859	0.74	-0.5
1,937,918	+		MPMX19_01859	0.74	+2.0
1,937,918	+		MPMX19_01859	0.74	+1.0
1,937,918	+		MPMX19_01859	0.74	-0.3
1,937,918	+		MPMX19_01859	0.74	-0.3
1,937,918	+		MPMX19_01859	0.74	+1.2
1,937,919	-		MPMX19_01859	0.74	-0.6
1,937,919	-		MPMX19_01859	0.74	-2.2
1,937,919	-		MPMX19_01859	0.74	-0.5
1,937,919	-		MPMX19_01859	0.74	+0.8
1,937,919	-		MPMX19_01859	0.74	+0.5
1,937,919	-		MPMX19_01859	0.74	+0.7
1,937,919	-		MPMX19_01859	0.74	+0.3
1,937,919	-		MPMX19_01859	0.74	+0.0
1,937,919	-		MPMX19_01859	0.74	-1.4
1,937,919	-		MPMX19_01859	0.74	-1.3
1,937,919	-		MPMX19_01859	0.74	+0.3
1,937,919	-		MPMX19_01859	0.74	-0.5
1,937,919	-		MPMX19_01859	0.74	-0.4
1,937,919	-		MPMX19_01859	0.74	-1.0
1,937,919	-		MPMX19_01859	0.74	-0.5
1,937,919	-		MPMX19_01859	0.74	-0.8
1,937,919	-		MPMX19_01859	0.74	-1.3
1,937,919	-		MPMX19_01859	0.74	-0.7
1,937,919	-		MPMX19_01859	0.74	+0.1
1,937,919	-		MPMX19_01859	0.74	-1.6
1,937,919	-		MPMX19_01859	0.74	+0.8
1,937,919	-		MPMX19_01859	0.74	+0.8
1,938,655	+		MPMX19_01860	0.69	-1.2
1,938,655	+		MPMX19_01860	0.69	-0.6
1,938,655	+		MPMX19_01860	0.69	-0.0
1,938,655	+		MPMX19_01860	0.69	-2.1
1,938,655	+		MPMX19_01860	0.69	-0.0
1,938,655	+		MPMX19_01860	0.69	-1.9
1,938,655	+		MPMX19_01860	0.69	-1.2
1,938,655	+		MPMX19_01860	0.69	-0.9
1,938,656	-		MPMX19_01860	0.70	-0.5
1,938,656	-		MPMX19_01860	0.70	-0.3
1,938,656	-		MPMX19_01860	0.70	-1.4
1,938,656	-		MPMX19_01860	0.70	-1.5
1,938,656	-		MPMX19_01860	0.70	-1.7
1,938,721	+				+0.2
1,938,721	+				-2.5
1,938,721	+				-0.3
1,938,721	+				+0.0
1,938,721	+				-0.6
1,938,721	+				-0.4
1,938,721	+				-1.9
1,938,721	+				+0.3
1,938,721	+				+0.4
1,938,722	-				-1.1
1,938,722	-				+0.6
1,938,722	-				+0.2
1,938,722	-				-0.9
1,938,722	-				+1.3
1,938,781	+				+0.1
1,938,781	+				+0.1
1,938,781	+				-1.2
1,938,781	+				-0.3
1,938,781	+				+0.3
1,938,781	+				-0.0
1,938,782	-				-0.6
1,938,782	-				-0.0
1,938,782	-				+0.1
1,938,782	-				+0.4
1,938,840	+				+1.0
1,938,841	-				+1.2
1,938,841	-				-1.5
1,938,886	+				-1.0
1,938,886	+				-0.5
1,938,886	+				-1.7
1,938,886	+				-2.4
1,938,886	+				-1.0
1,938,886	+				-0.3
1,938,886	+				+0.4
1,938,886	+				+0.3
1,938,886	+				-0.3
1,938,886	+				+0.5
1,938,886	+				-1.3
1,938,886	+				-1.0
1,938,887	-				-0.9
1,938,887	-				+0.5
1,938,887	-				-0.0
1,938,887	-				-0.0
1,938,887	-				+0.5
1,938,887	-				-0.6
1,938,887	-				+1.5
1,938,887	-				-1.9
1,938,887	-				-0.0
1,938,887	-				-1.0
1,938,887	-				-0.8
1,938,887	-				-1.1
1,938,887	-				+0.4
1,938,887	-				-2.0
1,938,887	-				-0.6
1,938,887	-				+0.7
1,938,887	-				+0.4
1,938,887	-				-0.9
1,938,887	-				-1.6
1,938,907	+				-1.0
1,938,907	+				+0.1
1,938,907	+				-0.8
1,938,907	+				+0.1
1,938,907	+				-0.7
1,938,907	+				+0.8
1,938,907	+				-0.9
1,938,907	+				-2.2
1,938,907	+				+0.2
1,938,907	+				-1.3
1,938,907	+				+0.1
1,938,907	+				+1.5
1,938,907	+				+0.3
1,938,908	-				-0.5
1,938,908	-				+0.2
1,938,908	-				+0.0
1,938,908	-				+0.0
1,938,908	-				+0.3
1,938,908	-				-0.6
1,938,908	-				+1.5
1,938,908	-				+0.7
1,938,908	-				-0.4
1,938,908	-				+0.9
1,938,908	-				-0.1
1,938,908	-				+0.4
1,938,958	+				-0.7
1,938,958	+				-0.5
1,938,959	-				-0.8
1,938,959	-				+0.5
1,938,959	-				+0.5
1,938,959	-				-2.3
1,938,959	-				-0.8
1,939,132	+		MPMX19_01861	0.14	-2.5
1,939,132	+		MPMX19_01861	0.14	-0.5
1,939,132	+		MPMX19_01861	0.14	-0.8
1,939,132	+		MPMX19_01861	0.14	-1.3
1,939,132	+		MPMX19_01861	0.14	-1.2
1,939,132	+		MPMX19_01861	0.14	-0.8
1,939,132	+		MPMX19_01861	0.14	-0.5
1,939,132	+		MPMX19_01861	0.14	-0.7
1,939,132	+		MPMX19_01861	0.14	-0.8
1,939,132	+		MPMX19_01861	0.14	-0.7
1,939,132	+		MPMX19_01861	0.14	-0.9
1,939,132	+		MPMX19_01861	0.14	-0.8
1,939,132	+		MPMX19_01861	0.14	+1.1
1,939,132	+		MPMX19_01861	0.14	-0.8
1,939,133	-		MPMX19_01861	0.14	-0.0
1,939,133	-		MPMX19_01861	0.14	+0.2
1,939,133	-		MPMX19_01861	0.14	-0.0
1,939,133	-		MPMX19_01861	0.14	-0.2
1,939,133	-		MPMX19_01861	0.14	-1.6
1,939,133	-		MPMX19_01861	0.14	+0.1
1,939,133	-		MPMX19_01861	0.14	+0.4
1,939,133	-		MPMX19_01861	0.14	-3.2
1,939,133	-		MPMX19_01861	0.14	-0.5
1,939,630	+		MPMX19_01861	0.32	-0.9
1,939,630	+		MPMX19_01861	0.32	-1.2
1,939,630	+		MPMX19_01861	0.32	-0.8
1,939,630	+		MPMX19_01861	0.32	-0.3
1,939,630	+		MPMX19_01861	0.32	-0.2
1,939,630	+		MPMX19_01861	0.32	-0.8
1,939,630	+		MPMX19_01861	0.32	-0.3
1,939,630	+		MPMX19_01861	0.32	-1.9
1,939,630	+		MPMX19_01861	0.32	+0.2
1,939,630	+		MPMX19_01861	0.32	-0.3
1,939,630	+		MPMX19_01861	0.32	-1.5
1,939,630	+		MPMX19_01861	0.32	-0.6
1,939,631	-		MPMX19_01861	0.32	-1.3
1,939,631	-		MPMX19_01861	0.32	+0.2
1,939,631	-		MPMX19_01861	0.32	+0.3
1,939,631	-		MPMX19_01861	0.32	-0.3
1,939,631	-		MPMX19_01861	0.32	-0.6
1,939,631	-		MPMX19_01861	0.32	-1.1
1,939,631	-		MPMX19_01861	0.32	+0.1
1,939,631	-		MPMX19_01861	0.32	+0.1
1,939,631	-		MPMX19_01861	0.32	-1.4
1,939,631	-		MPMX19_01861	0.32	-1.3
1,939,631	-		MPMX19_01861	0.32	-0.4