Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01362

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
1,417,807	+		MPMX19_01361	0.76	+0.5
1,417,808	-		MPMX19_01361	0.76	+0.0
1,417,808	-		MPMX19_01361	0.76	-0.1
1,417,810	+		MPMX19_01361	0.76	+0.4
1,417,811	-		MPMX19_01361	0.76	-0.3
1,417,811	-		MPMX19_01361	0.76	-0.5
1,417,927	+		MPMX19_01361	0.81	+1.0
1,417,927	+		MPMX19_01361	0.81	-2.0
1,417,927	+		MPMX19_01361	0.81	-1.5
1,417,927	+		MPMX19_01361	0.81	-0.3
1,417,927	+		MPMX19_01361	0.81	-0.1
1,417,927	+		MPMX19_01361	0.81	-0.2
1,417,927	+		MPMX19_01361	0.81	+1.3
1,417,927	+		MPMX19_01361	0.81	-0.3
1,417,927	+		MPMX19_01361	0.81	+0.6
1,417,927	+		MPMX19_01361	0.81	-0.2
1,417,928	-		MPMX19_01361	0.81	-1.6
1,417,928	-		MPMX19_01361	0.81	+0.0
1,417,928	-		MPMX19_01361	0.81	+0.0
1,417,928	-		MPMX19_01361	0.81	+0.3
1,417,928	-		MPMX19_01361	0.81	-0.4
1,417,928	-		MPMX19_01361	0.81	-1.4
1,417,928	-		MPMX19_01361	0.81	-0.4
1,418,053	+		MPMX19_01361	0.86	+0.3
1,418,053	+		MPMX19_01361	0.86	+0.0
1,418,053	+		MPMX19_01361	0.86	-0.4
1,418,053	+		MPMX19_01361	0.86	-0.5
1,418,053	+		MPMX19_01361	0.86	+0.8
1,418,053	+		MPMX19_01361	0.86	+0.4
1,418,053	+		MPMX19_01361	0.86	+0.7
1,418,053	+		MPMX19_01361	0.86	-0.4
1,418,053	+		MPMX19_01361	0.86	-0.4
1,418,054	-		MPMX19_01361	0.86	-0.7
1,418,054	-		MPMX19_01361	0.86	-0.7
1,418,054	-		MPMX19_01361	0.86	+1.1
1,418,054	-		MPMX19_01361	0.86	-0.5
1,418,371	+				+0.0
1,418,371	+				+1.0
1,418,371	+				-0.1
1,418,371	+				+0.9
1,418,371	+				-0.7
1,418,371	+				-0.5
1,418,371	+				-0.1
1,418,371	+				+0.3
1,418,371	+				-0.4
1,418,371	+				-0.6
1,418,371	+				+0.0
1,418,371	+				-1.4
1,418,371	+				-0.8
1,418,371	+				-0.7
1,418,371	+				+0.2
1,418,371	+				-0.4
1,418,372	-				-0.6
1,418,372	-				+1.0
1,418,372	-				-0.7
1,418,372	-				+0.6
1,418,372	-				-0.6
1,418,372	-				-1.0
1,418,372	-				-0.4
1,418,372	-				+0.1
1,418,372	-				+0.7
1,418,372	-				+0.3
1,418,372	-				+0.2
1,418,372	-				-1.0
1,418,372	-				-0.5
1,418,372	-				-0.1
1,418,372	-				-0.1
1,418,372	-				-0.1
1,418,372	-				-0.6
1,418,372	-				+0.4
1,418,372	-				-1.1
1,418,372	-				+1.0
1,418,373	+				-1.0
1,418,373	+				-0.4
1,418,374	-				+0.1
1,418,657	+				+0.4
1,418,657	+				+0.4
1,418,657	+				-1.4
1,418,657	+				-2.0
1,418,657	+				+1.2
1,418,657	+				+0.1
1,418,658	-				+0.6
1,418,658	-				+0.3
1,418,658	-				-0.5
1,418,658	-				-0.3
1,418,658	-				+1.2
1,418,658	-				-0.6
1,418,658	-				-1.6
1,418,658	-				-1.4
1,418,659	+				-0.0
1,418,659	+				-1.9
1,419,055	+		MPMX19_01362	0.25	-0.3
1,419,055	+		MPMX19_01362	0.25	+0.3
1,419,077	+		MPMX19_01362	0.26	+0.4
1,419,077	+		MPMX19_01362	0.26	+0.6
1,419,078	-		MPMX19_01362	0.26	-1.6
1,419,464	+		MPMX19_01362	0.50	-3.0
1,419,464	+		MPMX19_01362	0.50	-1.3
1,419,464	+		MPMX19_01362	0.50	+0.8
1,419,464	+		MPMX19_01362	0.50	-1.0
1,419,464	+		MPMX19_01362	0.50	-0.7
1,419,464	+		MPMX19_01362	0.50	-0.2
1,419,464	+		MPMX19_01362	0.50	+0.0
1,419,464	+		MPMX19_01362	0.50	-1.9
1,419,464	+		MPMX19_01362	0.50	+0.9
1,419,464	+		MPMX19_01362	0.50	+0.3
1,419,464	+		MPMX19_01362	0.50	-0.2
1,419,465	-		MPMX19_01362	0.51	-0.7
1,419,465	-		MPMX19_01362	0.51	-1.1
1,419,465	-		MPMX19_01362	0.51	-1.1
1,419,465	-		MPMX19_01362	0.51	+0.6
1,419,465	-		MPMX19_01362	0.51	-0.6
1,419,465	-		MPMX19_01362	0.51	+1.2
1,419,465	-		MPMX19_01362	0.51	+0.9
1,419,465	-		MPMX19_01362	0.51	+1.1
1,419,465	-		MPMX19_01362	0.51	-2.1
1,419,465	-		MPMX19_01362	0.51	+0.4
1,419,465	-		MPMX19_01362	0.51	-0.5
1,419,465	-		MPMX19_01362	0.51	-0.6
1,419,465	-		MPMX19_01362	0.51	+1.0
1,419,465	-		MPMX19_01362	0.51	+1.4
1,419,467	+		MPMX19_01362	0.51	+1.1
1,419,467	+		MPMX19_01362	0.51	+0.2
1,419,467	+		MPMX19_01362	0.51	-0.9
1,419,467	+		MPMX19_01362	0.51	+2.0
1,419,468	-		MPMX19_01362	0.51	+0.4
1,419,468	-		MPMX19_01362	0.51	+1.3
1,419,468	-		MPMX19_01362	0.51	-0.3
1,419,468	-		MPMX19_01362	0.51	-0.2
1,419,468	-		MPMX19_01362	0.51	-0.9
1,419,468	-		MPMX19_01362	0.51	+0.3
1,419,584	+		MPMX19_01362	0.58	+0.9
1,419,584	+		MPMX19_01362	0.58	+0.9
1,419,584	+		MPMX19_01362	0.58	+0.9
1,419,584	+		MPMX19_01362	0.58	+0.3
1,419,584	+		MPMX19_01362	0.58	-2.3
1,419,584	+		MPMX19_01362	0.58	-0.6
1,419,585	-		MPMX19_01362	0.58	+0.3
1,419,585	-		MPMX19_01362	0.58	+0.0
1,419,585	-		MPMX19_01362	0.58	+0.0
1,419,585	-		MPMX19_01362	0.58	-0.2
1,419,585	-		MPMX19_01362	0.58	+0.0
1,419,585	-		MPMX19_01362	0.58	-0.4
1,419,585	-		MPMX19_01362	0.58	-0.4
1,419,738	-		MPMX19_01362	0.68	-0.4
1,419,738	-		MPMX19_01362	0.68	+0.3
1,419,758	+		MPMX19_01362	0.69	-0.2
1,419,758	+		MPMX19_01362	0.69	-0.4
1,419,758	+		MPMX19_01362	0.69	+0.4
1,419,758	+		MPMX19_01362	0.69	-0.4
1,419,758	+		MPMX19_01362	0.69	-0.2
1,419,758	+		MPMX19_01362	0.69	-1.6
1,419,758	+		MPMX19_01362	0.69	+0.2
1,419,758	+		MPMX19_01362	0.69	-0.2
1,419,758	+		MPMX19_01362	0.69	+0.1
1,419,759	-		MPMX19_01362	0.69	+0.0
1,419,759	-		MPMX19_01362	0.69	-0.2
1,419,759	-		MPMX19_01362	0.69	+0.8
1,419,759	-		MPMX19_01362	0.69	-1.0
1,419,759	-		MPMX19_01362	0.69	-1.0
1,419,759	-		MPMX19_01362	0.69	-0.7
1,419,759	-		MPMX19_01362	0.69	-1.1
1,420,305	-				-0.4
1,420,307	+				-0.7
1,420,308	-				-1.6
1,420,322	+				+0.3
1,420,322	+				-0.4
1,420,322	+				+0.4
1,420,322	+				-0.1
1,420,322	+				+0.1
1,420,323	-				+0.8
1,420,323	-				-0.6
1,420,373	+				+0.4
1,420,383	-				+0.0
1,420,433	+		MPMX19_01363	0.15	-0.4
1,420,434	-		MPMX19_01363	0.15	+0.4
1,420,727	+		MPMX19_01363	0.49	+1.2
1,420,727	+		MPMX19_01363	0.49	-0.6
1,420,727	+		MPMX19_01363	0.49	-0.7
1,420,727	+		MPMX19_01363	0.49	-0.2
1,420,728	-		MPMX19_01363	0.49	-0.2
1,420,728	-		MPMX19_01363	0.49	+0.4
1,420,728	-		MPMX19_01363	0.49	+1.4
1,420,728	-		MPMX19_01363	0.49	-0.8
1,420,728	-		MPMX19_01363	0.49	-1.5
1,420,728	-		MPMX19_01363	0.49	+0.2
1,420,728	-		MPMX19_01363	0.49	+0.5
1,420,728	-		MPMX19_01363	0.49	+0.5
1,420,728	-		MPMX19_01363	0.49	-0.1
1,420,728	-		MPMX19_01363	0.49	+0.0
1,420,728	-		MPMX19_01363	0.49	-0.6
1,420,924	+		MPMX19_01363	0.72	+0.1
1,420,924	+		MPMX19_01363	0.72	+0.4
1,420,925	-		MPMX19_01363	0.72	-1.0
1,420,925	-		MPMX19_01363	0.72	+0.0
1,420,997	+		MPMX19_01363	0.81	-0.3
1,420,997	+		MPMX19_01363	0.81	-0.5
1,420,997	+		MPMX19_01363	0.81	-0.8
1,420,997	+		MPMX19_01363	0.81	-1.1
1,420,997	+		MPMX19_01363	0.81	-1.3
1,420,997	+		MPMX19_01363	0.81	+0.3
1,420,997	+		MPMX19_01363	0.81	-1.2
1,420,997	+		MPMX19_01363	0.81	+0.7
1,420,997	+		MPMX19_01363	0.81	+0.1
1,420,997	+		MPMX19_01363	0.81	-0.2
1,420,997	+		MPMX19_01363	0.81	-0.5
1,420,997	+		MPMX19_01363	0.81	+0.2
1,420,997	+		MPMX19_01363	0.81	-0.8
1,420,997	+		MPMX19_01363	0.81	-1.9
1,420,997	+		MPMX19_01363	0.81	+0.6
1,420,997	+		MPMX19_01363	0.81	+0.4
1,420,997	+		MPMX19_01363	0.81	+0.7
1,420,998	-		MPMX19_01363	0.81	-0.2
1,420,998	-		MPMX19_01363	0.81	-0.2
1,420,998	-		MPMX19_01363	0.81	-1.0
1,420,998	-		MPMX19_01363	0.81	-0.9
1,420,998	-		MPMX19_01363	0.81	-2.0
1,420,998	-		MPMX19_01363	0.81	-0.3
1,420,998	-		MPMX19_01363	0.81	-1.2
1,420,998	-		MPMX19_01363	0.81	+0.0
1,420,998	-		MPMX19_01363	0.81	+0.6
1,420,998	-		MPMX19_01363	0.81	+1.3
1,420,998	-		MPMX19_01363	0.81	-0.1
1,420,998	-		MPMX19_01363	0.81	-0.6
1,420,998	-		MPMX19_01363	0.81	-0.9
1,421,115	+				-1.0
1,421,115	+				+1.2
1,421,115	+				+0.1
1,421,116	-				+0.8
1,421,116	-				+0.4
1,421,117	+				-0.3
1,421,117	+				-0.5
1,421,117	+				-0.9
1,421,117	+				+0.0
1,421,117	+				-1.2
1,421,117	+				+0.5
1,421,117	+				-2.8
1,421,117	+				-1.0
1,421,118	-				-0.3
1,421,118	-				-0.4
1,421,118	-				-0.3
1,421,118	-				+2.5
1,421,118	-				+0.2
1,421,118	-				+0.1
1,421,118	-				-0.2
1,421,118	-				-0.2
1,421,118	-				+0.2
1,421,118	-				+0.6
1,421,133	+				+0.0
1,421,147	+				-1.2
1,421,147	+				-1.5
1,421,147	+				+1.2
1,421,147	+				-1.4
1,421,147	+				-0.7
1,421,148	-				-0.2
1,421,148	-				-0.2
1,421,148	-				-0.2
1,421,148	-				-1.2
1,421,148	-				+0.7
1,421,200	+				-1.4
1,421,200	+				-1.1
1,421,200	+				-1.3
1,421,200	+				+0.1
1,421,200	+				+0.4
1,421,200	+				-0.9
1,421,200	+				-0.9
1,421,200	+				+0.7
1,421,200	+				+0.0
1,421,200	+				+1.6
1,421,201	-				+0.9
1,421,201	-				-0.3
1,421,201	-				-2.5
1,421,201	-				-1.7
1,421,201	-				-0.2
1,421,201	-				-0.7
1,421,201	-				+0.2
1,421,201	-				+1.6
1,421,201	-				-0.6
1,421,201	-				-0.1
1,421,201	-				+1.2
1,421,201	-				+0.1
1,421,201	-				+0.8
1,421,201	-				-0.3
1,421,201	-				-0.5