Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01264

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM; low oxygen
				remove
1,315,249	+	MPMX19_01262	0.56	-1.0
1,315,250	-	MPMX19_01262	0.56	-0.6
1,315,345	+	MPMX19_01262	0.64	-0.2
1,315,345	+	MPMX19_01262	0.64	-0.6
1,315,345	+	MPMX19_01262	0.64	-0.7
1,315,345	+	MPMX19_01262	0.64	-0.7
1,315,345	+	MPMX19_01262	0.64	-2.0
1,315,345	+	MPMX19_01262	0.64	+0.2
1,315,345	+	MPMX19_01262	0.64	-0.5
1,315,345	+	MPMX19_01262	0.64	-1.5
1,315,345	+	MPMX19_01262	0.64	-0.7
1,315,345	+	MPMX19_01262	0.64	-1.4
1,315,345	+	MPMX19_01262	0.64	-0.8
1,315,345	+	MPMX19_01262	0.64	+0.4
1,315,345	+	MPMX19_01262	0.64	-0.1
1,315,345	+	MPMX19_01262	0.64	+0.5
1,315,345	+	MPMX19_01262	0.64	-1.7
1,315,345	+	MPMX19_01262	0.64	-0.4
1,315,345	+	MPMX19_01262	0.64	+1.1
1,315,345	+	MPMX19_01262	0.64	+0.0
1,315,345	+	MPMX19_01262	0.64	-0.9
1,315,346	-	MPMX19_01262	0.64	+0.2
1,315,346	-	MPMX19_01262	0.64	-0.2
1,315,346	-	MPMX19_01262	0.64	+0.5
1,315,346	-	MPMX19_01262	0.64	+0.5
1,315,346	-	MPMX19_01262	0.64	-0.2
1,315,346	-	MPMX19_01262	0.64	+0.6
1,315,346	-	MPMX19_01262	0.64	-0.6
1,315,346	-	MPMX19_01262	0.64	-1.6
1,315,346	-	MPMX19_01262	0.64	-0.1
1,315,346	-	MPMX19_01262	0.64	+0.3
1,315,346	-	MPMX19_01262	0.64	-0.2
1,315,346	-	MPMX19_01262	0.64	-0.8
1,315,346	-	MPMX19_01262	0.64	-0.6
1,315,346	-	MPMX19_01262	0.64	-1.0
1,315,346	-	MPMX19_01262	0.64	-0.2
1,315,405	+	MPMX19_01262	0.69	-2.0
1,315,405	+	MPMX19_01262	0.69	-1.0
1,315,405	+	MPMX19_01262	0.69	-0.2
1,315,405	+	MPMX19_01262	0.69	-1.0
1,315,405	+	MPMX19_01262	0.69	-0.6
1,315,405	+	MPMX19_01262	0.69	+0.0
1,315,405	+	MPMX19_01262	0.69	-0.7
1,315,405	+	MPMX19_01262	0.69	-0.7
1,315,405	+	MPMX19_01262	0.69	-0.7
1,315,405	+	MPMX19_01262	0.69	-0.4
1,315,405	+	MPMX19_01262	0.69	+0.5
1,315,406	-	MPMX19_01262	0.69	-0.4
1,315,406	-	MPMX19_01262	0.69	+0.3
1,315,406	-	MPMX19_01262	0.69	+0.6
1,315,406	-	MPMX19_01262	0.69	-1.0
1,315,406	-	MPMX19_01262	0.69	+0.3
1,315,406	-	MPMX19_01262	0.69	+0.9
1,315,406	-	MPMX19_01262	0.69	-0.5
1,315,406	-	MPMX19_01262	0.69	-0.7
1,315,406	-	MPMX19_01262	0.69	+0.2
1,315,406	-	MPMX19_01262	0.69	+1.1
1,315,406	-	MPMX19_01262	0.69	+1.6
1,315,927	+	MPMX19_01263	0.43	+0.0
1,315,927	+	MPMX19_01263	0.43	-0.3
1,315,927	+	MPMX19_01263	0.43	-0.1
1,315,927	+	MPMX19_01263	0.43	+1.6
1,315,927	+	MPMX19_01263	0.43	-0.4
1,315,927	+	MPMX19_01263	0.43	-1.5
1,315,927	+	MPMX19_01263	0.43	-1.4
1,315,927	+	MPMX19_01263	0.43	-0.1
1,315,927	+	MPMX19_01263	0.43	+0.9
1,315,927	+	MPMX19_01263	0.43	-0.0
1,315,927	+	MPMX19_01263	0.43	+1.0
1,315,927	+	MPMX19_01263	0.43	-0.2
1,315,927	+	MPMX19_01263	0.43	-0.5
1,315,927	+	MPMX19_01263	0.43	+0.1
1,315,927	+	MPMX19_01263	0.43	-0.2
1,315,927	+	MPMX19_01263	0.43	-2.4
1,315,928	-	MPMX19_01263	0.43	-0.6
1,315,928	-	MPMX19_01263	0.43	-1.1
1,315,928	-	MPMX19_01263	0.43	-0.7
1,315,928	-	MPMX19_01263	0.43	+0.0
1,315,928	-	MPMX19_01263	0.43	+0.2
1,315,928	-	MPMX19_01263	0.43	-0.3
1,315,928	-	MPMX19_01263	0.43	+0.5
1,315,928	-	MPMX19_01263	0.43	+0.3
1,315,928	-	MPMX19_01263	0.43	+0.6
1,315,928	-	MPMX19_01263	0.43	-0.7
1,315,928	-	MPMX19_01263	0.43	+0.3
1,315,928	-	MPMX19_01263	0.43	-0.8
1,315,928	-	MPMX19_01263	0.43	+0.6
1,315,928	-	MPMX19_01263	0.43	-0.6
1,315,928	-	MPMX19_01263	0.43	+0.6
1,315,928	-	MPMX19_01263	0.43	-0.2
1,315,928	-	MPMX19_01263	0.43	-0.6
1,316,074	+	MPMX19_01263	0.85	-0.2
1,316,074	+	MPMX19_01263	0.85	-1.4
1,316,074	+	MPMX19_01263	0.85	-0.7
1,316,074	+	MPMX19_01263	0.85	+0.1
1,316,074	+	MPMX19_01263	0.85	+0.8
1,316,074	+	MPMX19_01263	0.85	-1.4
1,316,074	+	MPMX19_01263	0.85	-0.8
1,316,074	+	MPMX19_01263	0.85	+0.3
1,316,075	-	MPMX19_01263	0.85	-1.0
1,316,075	-	MPMX19_01263	0.85	-0.5
1,316,075	-	MPMX19_01263	0.85	-0.4
1,316,075	-	MPMX19_01263	0.85	+0.3
1,316,075	-	MPMX19_01263	0.85	-0.3
1,316,075	-	MPMX19_01263	0.85	-0.7
1,316,150	+			-2.0
1,316,150	+			-0.4
1,316,150	-			-0.6
1,316,155	+			-1.1
1,316,156	-			+0.6
1,316,156	-			-1.4
1,316,185	-			-1.7
1,316,185	-			+0.1
1,316,466	+	MPMX19_01264	0.19	+0.0
1,316,466	+	MPMX19_01264	0.19	+0.8
1,316,466	+	MPMX19_01264	0.19	+0.6
1,316,466	+	MPMX19_01264	0.19	-0.2
1,316,466	+	MPMX19_01264	0.19	-2.3
1,316,466	+	MPMX19_01264	0.19	-0.4
1,316,466	+	MPMX19_01264	0.19	-1.0
1,316,466	+	MPMX19_01264	0.19	+0.2
1,316,466	+	MPMX19_01264	0.19	-1.0
1,316,466	+	MPMX19_01264	0.19	+0.0
1,316,466	+	MPMX19_01264	0.19	-1.6
1,316,466	+	MPMX19_01264	0.19	-1.2
1,316,466	+	MPMX19_01264	0.19	-0.6
1,316,466	+	MPMX19_01264	0.19	-1.2
1,316,466	+	MPMX19_01264	0.19	-1.0
1,316,466	+	MPMX19_01264	0.19	+0.3
1,316,467	-	MPMX19_01264	0.19	-1.3
1,316,467	-	MPMX19_01264	0.19	-0.1
1,316,467	-	MPMX19_01264	0.19	+0.0
1,316,467	-	MPMX19_01264	0.19	+0.3
1,316,467	-	MPMX19_01264	0.19	-1.2
1,316,467	-	MPMX19_01264	0.19	-0.3
1,316,467	-	MPMX19_01264	0.19	-2.0
1,316,467	-	MPMX19_01264	0.19	+0.8
1,316,467	-	MPMX19_01264	0.19	-0.9
1,316,467	-	MPMX19_01264	0.19	-1.5
1,316,467	-	MPMX19_01264	0.19	-0.4
1,316,467	-	MPMX19_01264	0.19	-0.9
1,316,724	+	MPMX19_01264	0.37	-0.8
1,316,724	+	MPMX19_01264	0.37	-1.2
1,316,724	+	MPMX19_01264	0.37	-2.4
1,316,725	-	MPMX19_01264	0.37	-0.0
1,316,725	-	MPMX19_01264	0.37	+2.6
1,316,725	-	MPMX19_01264	0.37	-1.2
1,316,725	-	MPMX19_01264	0.37	-1.7
1,316,725	-	MPMX19_01264	0.37	-1.5
1,316,730	+	MPMX19_01264	0.37	-1.2
1,316,730	+	MPMX19_01264	0.37	-4.0
1,316,730	+	MPMX19_01264	0.37	-1.7
1,316,730	+	MPMX19_01264	0.37	+0.4
1,316,730	+	MPMX19_01264	0.37	+0.0
1,316,730	+	MPMX19_01264	0.37	-0.2
1,316,730	+	MPMX19_01264	0.37	-0.5
1,316,730	+	MPMX19_01264	0.37	-1.1
1,316,730	+	MPMX19_01264	0.37	+0.6
1,316,730	+	MPMX19_01264	0.37	-0.6
1,316,730	+	MPMX19_01264	0.37	-0.4
1,316,730	+	MPMX19_01264	0.37	-0.4
1,316,731	-	MPMX19_01264	0.37	-2.3
1,316,731	-	MPMX19_01264	0.37	-1.4
1,316,731	-	MPMX19_01264	0.37	-1.2
1,316,731	-	MPMX19_01264	0.37	-0.2
1,316,731	-	MPMX19_01264	0.37	-1.5
1,316,731	-	MPMX19_01264	0.37	-0.2
1,316,731	-	MPMX19_01264	0.37	+0.2
1,316,731	-	MPMX19_01264	0.37	-1.2
1,316,731	-	MPMX19_01264	0.37	+0.8
1,316,731	-	MPMX19_01264	0.37	-1.7
1,316,731	-	MPMX19_01264	0.37	-2.2
1,316,731	-	MPMX19_01264	0.37	-1.4
1,316,731	-	MPMX19_01264	0.37	-1.0
1,316,731	-	MPMX19_01264	0.37	-0.1
1,316,731	-	MPMX19_01264	0.37	-1.0
1,316,898	+	MPMX19_01264	0.49	-2.4
1,316,898	+	MPMX19_01264	0.49	-0.5
1,316,898	+	MPMX19_01264	0.49	+0.3
1,316,898	+	MPMX19_01264	0.49	-2.5
1,316,898	+	MPMX19_01264	0.49	-2.2
1,316,898	+	MPMX19_01264	0.49	-1.4
1,316,898	+	MPMX19_01264	0.49	-0.3
1,316,898	+	MPMX19_01264	0.49	-0.6
1,316,898	+	MPMX19_01264	0.49	+0.2
1,316,898	+	MPMX19_01264	0.49	-0.1
1,316,898	+	MPMX19_01264	0.49	-1.7
1,316,898	+	MPMX19_01264	0.49	-0.2
1,316,898	+	MPMX19_01264	0.49	-0.7
1,316,898	+	MPMX19_01264	0.49	+0.6
1,316,899	-	MPMX19_01264	0.49	-0.1
1,316,899	-	MPMX19_01264	0.49	-1.6
1,316,899	-	MPMX19_01264	0.49	-0.6
1,316,899	-	MPMX19_01264	0.49	-0.4
1,316,899	-	MPMX19_01264	0.49	-0.6
1,316,899	-	MPMX19_01264	0.49	+0.5
1,316,899	-	MPMX19_01264	0.49	-0.2
1,316,899	-	MPMX19_01264	0.49	-1.1
1,316,899	-	MPMX19_01264	0.49	-0.6
1,316,899	-	MPMX19_01264	0.49	-0.4
1,316,899	-	MPMX19_01264	0.49	-2.1
1,316,899	-	MPMX19_01264	0.49	-1.0
1,316,899	-	MPMX19_01264	0.49	+0.6
1,316,899	-	MPMX19_01264	0.49	-0.6
1,316,899	-	MPMX19_01264	0.49	-0.3
1,316,899	-	MPMX19_01264	0.49	-1.0
1,316,901	+	MPMX19_01264	0.49	-0.5
1,316,901	+	MPMX19_01264	0.49	-0.2
1,316,901	+	MPMX19_01264	0.49	-1.5
1,316,901	+	MPMX19_01264	0.49	-2.9
1,316,901	+	MPMX19_01264	0.49	-0.7
1,316,901	+	MPMX19_01264	0.49	-0.2
1,316,901	+	MPMX19_01264	0.49	+0.6
1,316,902	-	MPMX19_01264	0.49	-2.2
1,316,902	-	MPMX19_01264	0.49	-1.2
1,316,902	-	MPMX19_01264	0.49	-0.3
1,316,902	-	MPMX19_01264	0.49	-1.7
1,316,902	-	MPMX19_01264	0.49	-1.2
1,316,902	-	MPMX19_01264	0.49	-0.7
1,316,902	-	MPMX19_01264	0.49	-0.6
1,316,902	-	MPMX19_01264	0.49	-2.2
1,316,902	-	MPMX19_01264	0.49	-0.6
1,316,902	-	MPMX19_01264	0.49	-1.0
1,316,902	-	MPMX19_01264	0.49	+0.0
1,316,902	-	MPMX19_01264	0.49	+0.2
1,316,902	-	MPMX19_01264	0.49	-0.5
1,316,902	-	MPMX19_01264	0.49	-0.5
1,317,017	-	MPMX19_01264	0.57	-1.2
1,317,115	+	MPMX19_01264	0.63	-0.3
1,317,115	+	MPMX19_01264	0.63	-0.2
1,317,115	+	MPMX19_01264	0.63	-0.4
1,317,115	+	MPMX19_01264	0.63	-1.3
1,317,115	+	MPMX19_01264	0.63	+1.0
1,317,115	+	MPMX19_01264	0.63	+0.1
1,317,115	+	MPMX19_01264	0.63	-0.2
1,317,115	+	MPMX19_01264	0.63	-0.7
1,317,115	+	MPMX19_01264	0.63	-0.6
1,317,115	+	MPMX19_01264	0.63	-2.5
1,317,115	+	MPMX19_01264	0.63	-1.6
1,317,116	-	MPMX19_01264	0.63	+0.6
1,317,116	-	MPMX19_01264	0.63	-1.7
1,317,116	-	MPMX19_01264	0.63	-1.9
1,317,116	-	MPMX19_01264	0.63	+0.5
1,317,116	-	MPMX19_01264	0.63	+0.6
1,317,169	-	MPMX19_01264	0.67	-0.2
1,317,169	-	MPMX19_01264	0.67	-0.7
1,317,186	+	MPMX19_01264	0.68	+0.3
1,317,186	+	MPMX19_01264	0.68	-1.6
1,317,186	+	MPMX19_01264	0.68	-1.0
1,317,186	+	MPMX19_01264	0.68	+1.0
1,317,186	+	MPMX19_01264	0.68	-0.8
1,317,187	-	MPMX19_01264	0.68	+2.3
1,317,187	-	MPMX19_01264	0.68	-1.9
1,317,187	-	MPMX19_01264	0.68	-0.0
1,317,187	-	MPMX19_01264	0.68	-1.6
1,317,187	-	MPMX19_01264	0.68	-0.4
1,317,187	-	MPMX19_01264	0.68	+0.0
1,317,187	-	MPMX19_01264	0.68	-0.2
1,317,187	-	MPMX19_01264	0.68	-0.1
1,317,187	-	MPMX19_01264	0.68	-1.0
1,317,187	-	MPMX19_01264	0.68	+1.2
1,317,187	-	MPMX19_01264	0.68	-0.1
1,317,258	+	MPMX19_01264	0.73	+1.2
1,317,258	+	MPMX19_01264	0.73	-2.6
1,317,258	+	MPMX19_01264	0.73	-0.1
1,317,259	-	MPMX19_01264	0.73	+1.3
1,317,259	-	MPMX19_01264	0.73	-0.6
1,317,505	+	MPMX19_01264	0.90	-0.2
1,317,505	+	MPMX19_01264	0.90	-0.4
1,317,505	+	MPMX19_01264	0.90	-0.1
1,317,505	+	MPMX19_01264	0.90	+0.4
1,317,505	+	MPMX19_01264	0.90	-1.7
1,317,506	-	MPMX19_01264	0.90	-1.5
1,317,667	+			-1.7
1,317,667	+			+1.2
1,317,667	+			+1.6
1,317,667	+			+1.1
1,317,667	+			-0.8
1,317,667	+			+0.8
1,317,667	+			-0.1
1,317,667	+			-1.4
1,317,667	+			-0.5
1,317,667	+			-1.7
1,317,667	+			-1.7
1,317,667	+			-1.6
1,317,667	+			-0.4
1,317,667	+			-0.2
1,317,667	+			-1.7
1,317,667	+			-1.4
1,317,667	+			-0.4
1,317,667	+			-0.7
1,317,667	+			-0.4
1,317,667	+			+0.0
1,317,667	+			-0.1
1,317,667	+			-0.9
1,317,667	+			+0.0
1,317,667	+			+0.1
1,317,668	-			+0.1
1,317,668	-			-0.3
1,317,668	-			+0.4
1,317,668	-			-0.4
1,317,668	-			+0.4
1,317,668	-			+1.0
1,317,668	-			-1.3
1,317,668	-			-1.1
1,317,668	-			-0.3
1,317,668	-			+0.3
1,317,668	-			-3.0
1,317,668	-			-1.2
1,317,668	-			-1.2
1,317,668	-			-1.2
1,317,668	-			-0.1
1,317,668	-			-0.1
1,317,668	-			-0.4
1,317,668	-			-0.1
1,317,668	-			-0.1
1,317,737	+			+1.0
1,317,737	+			-0.3
1,317,737	+			+2.6
1,317,737	+			-0.7
1,317,737	+			-1.1
1,317,737	+			+0.2
1,317,737	+			-0.4
1,317,738	-			+0.0
1,317,738	-			-0.0
1,317,738	-			-1.0
1,317,738	-			-0.6
1,317,738	-			-0.4
1,317,738	-			-0.6
1,317,738	-			+0.9
1,317,738	-			+1.6
1,317,738	-			-2.1
1,317,738	-			-0.2
1,317,738	-			+0.6
1,317,738	-			-0.4
1,317,738	-			-0.5
1,317,738	-			+0.4
1,317,738	-			-0.7
1,317,753	+			-1.1
1,317,792	-			-0.5
1,317,792	-			-1.9
1,317,792	-			-0.7
1,317,792	-			-1.5

Or see this region's nucleotide sequence