Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01142

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
1,176,988	+				+0.3
1,176,988	+				+0.3
1,176,988	+				+0.4
1,177,226	+		MPMX19_01141	0.24	-0.4
1,177,226	+		MPMX19_01141	0.24	-0.2
1,177,226	+		MPMX19_01141	0.24	+0.0
1,177,227	-		MPMX19_01141	0.24	+2.6
1,177,227	-		MPMX19_01141	0.24	-0.4
1,177,227	-		MPMX19_01141	0.24	-0.4
1,177,227	-		MPMX19_01141	0.24	+0.6
1,177,227	-		MPMX19_01141	0.24	-0.4
1,177,227	-		MPMX19_01141	0.24	-1.0
1,177,227	-		MPMX19_01141	0.24	+0.2
1,177,658	+		MPMX19_01141	0.71	-1.8
1,177,658	+		MPMX19_01141	0.71	-0.4
1,177,658	+		MPMX19_01141	0.71	+0.0
1,177,658	+		MPMX19_01141	0.71	+1.0
1,177,658	+		MPMX19_01141	0.71	+1.2
1,177,658	+		MPMX19_01141	0.71	-1.0
1,177,658	+		MPMX19_01141	0.71	-1.2
1,177,658	+		MPMX19_01141	0.71	+0.6
1,177,658	+		MPMX19_01141	0.71	+0.6
1,177,658	+		MPMX19_01141	0.71	+0.3
1,177,658	+		MPMX19_01141	0.71	-0.6
1,177,658	+		MPMX19_01141	0.71	-0.7
1,177,659	-		MPMX19_01141	0.71	+0.1
1,177,659	-		MPMX19_01141	0.71	-1.4
1,177,659	-		MPMX19_01141	0.71	+0.6
1,177,659	-		MPMX19_01141	0.71	-1.4
1,177,659	-		MPMX19_01141	0.71	-1.4
1,177,659	-		MPMX19_01141	0.71	-1.4
1,177,659	-		MPMX19_01141	0.71	-0.1
1,177,659	-		MPMX19_01141	0.71	-1.2
1,177,659	-		MPMX19_01141	0.71	+1.6
1,177,659	-		MPMX19_01141	0.71	-0.1
1,178,431	+		MPMX19_01142	0.47	-0.7
1,178,431	+		MPMX19_01142	0.47	-0.4
1,178,431	+		MPMX19_01142	0.47	+0.6
1,178,431	+		MPMX19_01142	0.47	-1.2
1,178,431	+		MPMX19_01142	0.47	-0.2
1,178,431	+		MPMX19_01142	0.47	+0.6
1,178,431	+		MPMX19_01142	0.47	-0.2
1,178,431	+		MPMX19_01142	0.47	+0.0
1,178,432	-		MPMX19_01142	0.47	-1.1
1,178,432	-		MPMX19_01142	0.47	+0.4
1,178,432	-		MPMX19_01142	0.47	-3.0
1,178,432	-		MPMX19_01142	0.47	-0.4
1,178,432	-		MPMX19_01142	0.47	-1.1
1,178,432	-		MPMX19_01142	0.47	-1.7
1,178,497	+		MPMX19_01142	0.53	-0.2
1,178,498	-		MPMX19_01142	0.53	+1.3
1,178,498	-		MPMX19_01142	0.53	-0.4
1,178,498	-		MPMX19_01142	0.53	+0.2
1,178,498	-		MPMX19_01142	0.53	+1.6
1,178,498	-		MPMX19_01142	0.53	+1.6
1,178,687	+		MPMX19_01142	0.72	-1.4
1,178,687	+		MPMX19_01142	0.72	-1.0
1,178,687	+		MPMX19_01142	0.72	-1.1
1,178,687	+		MPMX19_01142	0.72	-0.4
1,178,687	+		MPMX19_01142	0.72	-0.7
1,178,688	-		MPMX19_01142	0.72	+0.0
1,178,688	-		MPMX19_01142	0.72	-2.0
1,178,688	-		MPMX19_01142	0.72	-0.1
1,178,688	-		MPMX19_01142	0.72	-0.3
1,178,688	-		MPMX19_01142	0.72	-1.6
1,179,154	+				+0.0
1,179,154	+				-0.1
1,179,154	+				-1.2
1,179,154	+				-1.6
1,179,154	+				-0.3
1,179,155	-				-1.0
1,179,155	-				+0.3
1,179,155	-				+1.3
1,179,155	-				-1.4
1,179,155	-				-0.3
1,179,155	-				+0.2
1,179,210	+				-0.6
1,179,210	+				-0.4
1,179,210	+				-1.2
1,179,210	+				+1.6
1,179,210	+				+0.3
1,179,210	+				-0.4
1,179,210	+				-2.8
1,179,210	+				-0.1
1,179,210	+				+0.5
1,179,210	+				+0.6
1,179,210	+				-0.2
1,179,210	+				-0.6
1,179,210	+				-1.4
1,179,210	+				+0.5
1,179,210	+				-0.1
1,179,211	-				-0.2
1,179,211	-				-0.6
1,179,211	-				+0.9
1,179,211	-				+0.6
1,179,211	-				+0.0
1,179,211	-				-1.8
1,179,211	-				-1.2
1,179,211	-				+1.1
1,179,211	-				-0.6
1,179,211	-				-0.5
1,179,211	-				+1.0
1,179,211	-				+0.6
1,179,211	-				+0.9
1,179,334	+		MPMX19_01143	0.25	-1.0
1,179,334	+		MPMX19_01143	0.25	-0.7
1,179,334	+		MPMX19_01143	0.25	-0.4
1,179,334	+		MPMX19_01143	0.25	-0.2
1,179,334	+		MPMX19_01143	0.25	-0.8
1,179,334	+		MPMX19_01143	0.25	-0.6
1,179,335	-		MPMX19_01143	0.25	-1.4
1,179,335	-		MPMX19_01143	0.25	-1.0
1,179,335	-		MPMX19_01143	0.25	+1.3
1,179,335	-		MPMX19_01143	0.25	-0.6
1,179,335	-		MPMX19_01143	0.25	-0.7
1,179,335	-		MPMX19_01143	0.25	-1.0
1,179,335	-		MPMX19_01143	0.25	-1.0
1,179,335	-		MPMX19_01143	0.25	-0.9
1,179,335	-		MPMX19_01143	0.25	-0.7
1,179,335	-		MPMX19_01143	0.25	-0.4
1,179,335	-		MPMX19_01143	0.25	+0.7
1,179,335	-		MPMX19_01143	0.25	+0.5
1,179,335	-		MPMX19_01143	0.25	-2.8
1,179,448	+		MPMX19_01143	0.43	-0.1
1,179,448	+		MPMX19_01143	0.43	+0.4
1,179,448	+		MPMX19_01143	0.43	-0.8
1,179,448	+		MPMX19_01143	0.43	+0.6
1,179,448	+		MPMX19_01143	0.43	+1.3
1,179,448	+		MPMX19_01143	0.43	-0.1
1,179,449	-		MPMX19_01143	0.43	-0.3
1,179,449	-		MPMX19_01143	0.43	-0.8
1,179,449	-		MPMX19_01143	0.43	-2.1
1,179,561	+		MPMX19_01143	0.61	+0.4
1,179,561	+		MPMX19_01143	0.61	+0.4
1,179,561	+		MPMX19_01143	0.61	-0.8
1,179,562	-		MPMX19_01143	0.61	-0.4
1,179,562	-		MPMX19_01143	0.61	-0.7
1,179,646	+		MPMX19_01143	0.74	-0.3
1,179,646	+		MPMX19_01143	0.74	-1.0
1,179,646	+		MPMX19_01143	0.74	-1.0
1,179,646	+		MPMX19_01143	0.74	-0.4
1,179,646	+		MPMX19_01143	0.74	-0.4
1,179,646	+		MPMX19_01143	0.74	-0.9
1,179,646	+		MPMX19_01143	0.74	-0.7
1,179,646	+		MPMX19_01143	0.74	-0.7
1,179,646	+		MPMX19_01143	0.74	+0.7
1,179,646	+		MPMX19_01143	0.74	-1.2
1,179,646	+		MPMX19_01143	0.74	-1.0
1,179,646	+		MPMX19_01143	0.74	+0.4
1,179,646	+		MPMX19_01143	0.74	-0.3
1,179,646	+		MPMX19_01143	0.74	-1.2
1,179,646	+		MPMX19_01143	0.74	+0.3
1,179,646	+		MPMX19_01143	0.74	+0.4
1,179,646	+		MPMX19_01143	0.74	-0.7
1,179,646	+		MPMX19_01143	0.74	-0.4
1,179,647	-		MPMX19_01143	0.75	-0.3
1,179,647	-		MPMX19_01143	0.75	-0.6
1,179,647	-		MPMX19_01143	0.75	+0.5
1,179,647	-		MPMX19_01143	0.75	-0.5
1,179,647	-		MPMX19_01143	0.75	-0.8
1,179,647	-		MPMX19_01143	0.75	+0.8
1,179,647	-		MPMX19_01143	0.75	-0.6
1,179,647	-		MPMX19_01143	0.75	+0.6
1,179,647	-		MPMX19_01143	0.75	-1.0
1,179,647	-		MPMX19_01143	0.75	+0.5
1,179,647	-		MPMX19_01143	0.75	-0.6
1,179,647	-		MPMX19_01143	0.75	+0.5
1,179,647	-		MPMX19_01143	0.75	-0.7
1,179,697	+		MPMX19_01143	0.82	+0.6
1,179,697	+		MPMX19_01143	0.82	-0.4
1,179,697	+		MPMX19_01143	0.82	-0.6
1,179,697	+		MPMX19_01143	0.82	+0.0
1,179,697	+		MPMX19_01143	0.82	+0.3
1,179,697	+		MPMX19_01143	0.82	-1.7
1,179,697	+		MPMX19_01143	0.82	+0.2
1,179,697	+		MPMX19_01143	0.82	-0.2
1,179,697	+		MPMX19_01143	0.82	+1.6
1,179,697	+		MPMX19_01143	0.82	-0.5
1,179,697	+		MPMX19_01143	0.82	+0.2
1,179,698	-		MPMX19_01143	0.83	+0.1
1,179,698	-		MPMX19_01143	0.83	+0.7
1,179,698	-		MPMX19_01143	0.83	+1.3
1,179,698	-		MPMX19_01143	0.83	-0.7
1,179,698	-		MPMX19_01143	0.83	+0.0
1,179,698	-		MPMX19_01143	0.83	-0.3
1,179,698	-		MPMX19_01143	0.83	-0.4
1,179,698	-		MPMX19_01143	0.83	+0.6
1,179,698	-		MPMX19_01143	0.83	-0.8
1,179,698	-		MPMX19_01143	0.83	+0.3
1,179,698	-		MPMX19_01143	0.83	+1.0
1,179,698	-		MPMX19_01143	0.83	+1.3
1,179,698	-		MPMX19_01143	0.83	+0.9
1,179,698	-		MPMX19_01143	0.83	-0.9
1,179,698	-		MPMX19_01143	0.83	-0.5
1,179,758	+				+0.6
1,179,758	+				+0.6
1,179,758	+				-0.2
1,179,758	+				+0.3
1,179,758	+				-1.4
1,179,758	+				-1.0
1,179,758	+				-2.1
1,179,758	+				+1.6
1,179,758	+				-0.2
1,179,758	+				-1.6
1,179,758	+				+0.3
1,179,758	+				-1.6
1,179,758	+				+0.6
1,179,758	+				-1.5
1,179,758	+				-0.6
1,179,758	+				-0.9
1,179,759	-				+0.8
1,179,759	-				-0.7
1,179,759	-				-1.0
1,179,759	-				+0.3
1,179,759	-				+1.1
1,179,759	-				+0.4
1,179,759	-				-1.8
1,179,759	-				-0.5
1,179,759	-				-0.3
1,179,759	-				+1.2
1,179,759	-				-0.2
1,179,859	+		MPMX19_01144	0.14	-0.0
1,179,860	-		MPMX19_01144	0.14	-1.3
1,179,860	-		MPMX19_01144	0.14	+1.0
1,179,860	-		MPMX19_01144	0.14	-1.4