Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00933 and MPMX19_00934 are separated by 49 nucleotides MPMX19_00934 and MPMX19_00935 are separated by 0 nucleotides MPMX19_00935 and MPMX19_00936 are separated by 426 nucleotides
MPMX19_00933: MPMX19_00933 - hypothetical protein, at 970,682 to 971,641
_00933
MPMX19_00934: MPMX19_00934 - 30S ribosomal protein S18, at 971,691 to 971,960
_00934
MPMX19_00935: MPMX19_00935 - 30S ribosomal protein S6, at 971,961 to 972,401
_00935
MPMX19_00936: MPMX19_00936 - hypothetical protein, at 972,828 to 973,814
_00936
Position (kb) 971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 971.401 kb on - strand, within MPMX19_00933 at 972.575 kb on - strand at 972.585 kb on + strand at 972.585 kb on + strand at 972.586 kb on - strand at 972.586 kb on - strand at 972.586 kb on - strand at 972.586 kb on - strand at 972.586 kb on - strand at 972.656 kb on + strand at 972.689 kb on + strand at 972.689 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.719 kb on + strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.720 kb on - strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.765 kb on + strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.766 kb on - strand at 972.823 kb on + strand at 972.823 kb on + strand at 972.823 kb on + strand at 972.823 kb on + strand at 972.824 kb on - strand at 972.824 kb on - strand at 972.824 kb on - strand at 972.824 kb on - strand at 972.824 kb on - strand at 972.849 kb on + strand at 972.849 kb on + strand at 972.849 kb on + strand at 972.850 kb on - strand at 972.897 kb on + strand at 972.897 kb on + strand at 972.898 kb on - strand at 972.898 kb on - strand at 972.898 kb on - strand at 972.951 kb on + strand, within MPMX19_00936 at 972.951 kb on + strand, within MPMX19_00936 at 972.951 kb on + strand, within MPMX19_00936 at 972.951 kb on + strand, within MPMX19_00936 at 972.951 kb on + strand, within MPMX19_00936 at 972.951 kb on + strand, within MPMX19_00936 at 972.951 kb on + strand, within MPMX19_00936 at 972.951 kb on + strand, within MPMX19_00936 at 972.951 kb on + strand, within MPMX19_00936 at 972.952 kb on - strand, within MPMX19_00936 at 972.952 kb on - strand, within MPMX19_00936 at 972.952 kb on - strand, within MPMX19_00936 at 972.952 kb on - strand, within MPMX19_00936 at 972.952 kb on - strand, within MPMX19_00936 at 972.952 kb on - strand, within MPMX19_00936 at 972.952 kb on - strand, within MPMX19_00936 at 972.958 kb on - strand, within MPMX19_00936 at 972.958 kb on - strand, within MPMX19_00936 at 972.986 kb on + strand, within MPMX19_00936 at 972.986 kb on + strand, within MPMX19_00936 at 972.986 kb on + strand, within MPMX19_00936 at 972.986 kb on + strand, within MPMX19_00936 at 972.986 kb on + strand, within MPMX19_00936 at 972.986 kb on + strand, within MPMX19_00936 at 972.986 kb on + strand, within MPMX19_00936 at 972.987 kb on - strand, within MPMX19_00936 at 972.987 kb on - strand, within MPMX19_00936 at 972.987 kb on - strand, within MPMX19_00936 at 973.020 kb on + strand, within MPMX19_00936 at 973.020 kb on + strand, within MPMX19_00936 at 973.020 kb on + strand, within MPMX19_00936 at 973.020 kb on + strand, within MPMX19_00936 at 973.020 kb on + strand, within MPMX19_00936 at 973.020 kb on + strand, within MPMX19_00936 at 973.020 kb on + strand, within MPMX19_00936 at 973.021 kb on - strand, within MPMX19_00936 at 973.021 kb on - strand, within MPMX19_00936 at 973.021 kb on - strand, within MPMX19_00936 at 973.021 kb on - strand, within MPMX19_00936 at 973.021 kb on - strand, within MPMX19_00936 at 973.021 kb on - strand, within MPMX19_00936 at 973.021 kb on - strand, within MPMX19_00936 at 973.021 kb on - strand, within MPMX19_00936 at 973.021 kb on - strand, within MPMX19_00936 at 973.021 kb on - strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.192 kb on - strand, within MPMX19_00936 at 973.192 kb on - strand, within MPMX19_00936 at 973.192 kb on - strand, within MPMX19_00936 at 973.192 kb on - strand, within MPMX19_00936 at 973.192 kb on - strand, within MPMX19_00936 at 973.197 kb on + strand, within MPMX19_00936 at 973.197 kb on + strand, within MPMX19_00936 at 973.197 kb on + strand, within MPMX19_00936 at 973.198 kb on - strand, within MPMX19_00936 at 973.198 kb on - strand, within MPMX19_00936 at 973.198 kb on - strand, within MPMX19_00936 at 973.212 kb on + strand, within MPMX19_00936 at 973.212 kb on + strand, within MPMX19_00936 at 973.212 kb on + strand, within MPMX19_00936 at 973.212 kb on + strand, within MPMX19_00936 at 973.213 kb on - strand, within MPMX19_00936 at 973.213 kb on - strand, within MPMX19_00936 at 973.349 kb on + strand, within MPMX19_00936 at 973.349 kb on + strand, within MPMX19_00936 at 973.349 kb on + strand, within MPMX19_00936 at 973.349 kb on + strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 971,401 - MPMX19_00933 0.75 -0.9 972,575 - -1.6 972,585 + -0.9 972,585 + +0.6 972,586 - +0.2 972,586 - -0.3 972,586 - -1.0 972,586 - -1.7 972,586 - -0.7 972,656 + +0.4 972,689 + -1.0 972,689 + +1.0 972,719 + -0.4 972,719 + +0.6 972,719 + +0.0 972,719 + +0.3 972,719 + -0.6 972,719 + -1.2 972,719 + +0.3 972,719 + +0.2 972,719 + +0.6 972,719 + +1.4 972,719 + +0.3 972,719 + +0.5 972,719 + +0.6 972,719 + +0.6 972,719 + -0.1 972,719 + +0.5 972,719 + -0.1 972,720 - -0.7 972,720 - -1.7 972,720 - -0.7 972,720 - -1.6 972,720 - -0.5 972,720 - -0.5 972,720 - -1.0 972,720 - -1.1 972,720 - +0.8 972,720 - -1.7 972,720 - -1.1 972,720 - +0.0 972,720 - -0.7 972,720 - -1.2 972,720 - -1.0 972,720 - -1.4 972,720 - -0.2 972,720 - -0.5 972,720 - -2.5 972,720 - +0.6 972,720 - -1.1 972,720 - -1.0 972,720 - -2.1 972,720 - +0.3 972,720 - -1.4 972,720 - -0.5 972,720 - -0.5 972,720 - +0.7 972,765 + -0.1 972,765 + -0.5 972,765 + +0.1 972,765 + -1.7 972,765 + -0.4 972,765 + +0.3 972,765 + +0.1 972,765 + -0.2 972,765 + -0.1 972,765 + -1.2 972,765 + -1.2 972,765 + +0.2 972,765 + +0.3 972,765 + -0.7 972,765 + -0.2 972,765 + -1.3 972,765 + -1.2 972,765 + -2.8 972,765 + -0.4 972,765 + -0.4 972,765 + -0.7 972,765 + -0.3 972,765 + -0.4 972,765 + -0.4 972,765 + +0.6 972,766 - +0.4 972,766 - +1.3 972,766 - +0.0 972,766 - -0.7 972,766 - -0.7 972,766 - +0.6 972,766 - -0.3 972,766 - -0.4 972,766 - -0.7 972,766 - -0.8 972,766 - -0.7 972,766 - -1.3 972,766 - +0.1 972,766 - +0.4 972,766 - -0.5 972,766 - -0.2 972,766 - -0.4 972,766 - +0.0 972,766 - -0.1 972,766 - +0.9 972,766 - -0.2 972,766 - -0.8 972,766 - -1.0 972,766 - +1.4 972,766 - +0.7 972,766 - -2.2 972,823 + -0.2 972,823 + -0.7 972,823 + +0.4 972,823 + +0.8 972,824 - +0.1 972,824 - -0.1 972,824 - +0.3 972,824 - -0.5 972,824 - -1.1 972,849 + +0.7 972,849 + -0.3 972,849 + +0.9 972,850 - +0.3 972,897 + -0.1 972,897 + -1.4 972,898 - -1.4 972,898 - -1.2 972,898 - -0.4 972,951 + MPMX19_00936 0.12 +1.2 972,951 + MPMX19_00936 0.12 -0.3 972,951 + MPMX19_00936 0.12 -1.5 972,951 + MPMX19_00936 0.12 +0.2 972,951 + MPMX19_00936 0.12 -0.6 972,951 + MPMX19_00936 0.12 -1.2 972,951 + MPMX19_00936 0.12 +0.0 972,951 + MPMX19_00936 0.12 +0.2 972,951 + MPMX19_00936 0.12 +0.6 972,952 - MPMX19_00936 0.13 -0.5 972,952 - MPMX19_00936 0.13 +0.7 972,952 - MPMX19_00936 0.13 -1.6 972,952 - MPMX19_00936 0.13 -0.4 972,952 - MPMX19_00936 0.13 -1.0 972,952 - MPMX19_00936 0.13 -0.0 972,952 - MPMX19_00936 0.13 +0.8 972,958 - MPMX19_00936 0.13 -0.3 972,958 - MPMX19_00936 0.13 -0.6 972,986 + MPMX19_00936 0.16 -1.7 972,986 + MPMX19_00936 0.16 -1.2 972,986 + MPMX19_00936 0.16 +0.4 972,986 + MPMX19_00936 0.16 +1.4 972,986 + MPMX19_00936 0.16 +0.6 972,986 + MPMX19_00936 0.16 -0.2 972,986 + MPMX19_00936 0.16 -1.2 972,987 - MPMX19_00936 0.16 -1.9 972,987 - MPMX19_00936 0.16 +0.7 972,987 - MPMX19_00936 0.16 -1.3 973,020 + MPMX19_00936 0.19 -0.5 973,020 + MPMX19_00936 0.19 +0.8 973,020 + MPMX19_00936 0.19 -1.7 973,020 + MPMX19_00936 0.19 -1.0 973,020 + MPMX19_00936 0.19 +0.7 973,020 + MPMX19_00936 0.19 -0.0 973,020 + MPMX19_00936 0.19 -0.6 973,021 - MPMX19_00936 0.20 +0.0 973,021 - MPMX19_00936 0.20 -1.3 973,021 - MPMX19_00936 0.20 -0.2 973,021 - MPMX19_00936 0.20 +0.3 973,021 - MPMX19_00936 0.20 -0.3 973,021 - MPMX19_00936 0.20 -2.7 973,021 - MPMX19_00936 0.20 +0.3 973,021 - MPMX19_00936 0.20 -1.0 973,021 - MPMX19_00936 0.20 -1.2 973,021 - MPMX19_00936 0.20 -0.9 973,119 + MPMX19_00936 0.29 +0.2 973,119 + MPMX19_00936 0.29 -0.6 973,119 + MPMX19_00936 0.29 -1.9 973,119 + MPMX19_00936 0.29 +0.2 973,119 + MPMX19_00936 0.29 -0.5 973,119 + MPMX19_00936 0.29 -0.3 973,119 + MPMX19_00936 0.29 +0.1 973,120 - MPMX19_00936 0.30 -0.7 973,120 - MPMX19_00936 0.30 -0.3 973,120 - MPMX19_00936 0.30 -0.6 973,120 - MPMX19_00936 0.30 -2.7 973,120 - MPMX19_00936 0.30 +0.1 973,120 - MPMX19_00936 0.30 -1.4 973,120 - MPMX19_00936 0.30 +0.0 973,120 - MPMX19_00936 0.30 +0.1 973,120 - MPMX19_00936 0.30 -0.6 973,120 - MPMX19_00936 0.30 -1.0 973,185 + MPMX19_00936 0.36 +0.2 973,185 + MPMX19_00936 0.36 +0.3 973,185 + MPMX19_00936 0.36 +0.1 973,185 + MPMX19_00936 0.36 +0.4 973,185 + MPMX19_00936 0.36 +1.3 973,185 + MPMX19_00936 0.36 -0.4 973,185 + MPMX19_00936 0.36 -1.7 973,185 + MPMX19_00936 0.36 -1.7 973,185 + MPMX19_00936 0.36 -1.3 973,185 + MPMX19_00936 0.36 +0.0 973,185 + MPMX19_00936 0.36 +1.9 973,185 + MPMX19_00936 0.36 +0.5 973,185 + MPMX19_00936 0.36 -0.6 973,185 + MPMX19_00936 0.36 +0.4 973,185 + MPMX19_00936 0.36 -0.5 973,185 + MPMX19_00936 0.36 -0.6 973,186 - MPMX19_00936 0.36 -1.1 973,186 - MPMX19_00936 0.36 +0.3 973,186 - MPMX19_00936 0.36 +0.0 973,186 - MPMX19_00936 0.36 +0.0 973,186 - MPMX19_00936 0.36 -0.4 973,186 - MPMX19_00936 0.36 -0.9 973,186 - MPMX19_00936 0.36 +0.4 973,186 - MPMX19_00936 0.36 -0.9 973,186 - MPMX19_00936 0.36 -0.7 973,186 - MPMX19_00936 0.36 +0.4 973,191 + MPMX19_00936 0.37 +0.6 973,191 + MPMX19_00936 0.37 +0.6 973,191 + MPMX19_00936 0.37 -0.3 973,191 + MPMX19_00936 0.37 +0.3 973,191 + MPMX19_00936 0.37 -0.9 973,191 + MPMX19_00936 0.37 -0.9 973,191 + MPMX19_00936 0.37 +0.3 973,192 - MPMX19_00936 0.37 +0.0 973,192 - MPMX19_00936 0.37 +0.0 973,192 - MPMX19_00936 0.37 -1.2 973,192 - MPMX19_00936 0.37 -0.3 973,192 - MPMX19_00936 0.37 -1.2 973,197 + MPMX19_00936 0.37 -0.1 973,197 + MPMX19_00936 0.37 +0.6 973,197 + MPMX19_00936 0.37 +0.0 973,198 - MPMX19_00936 0.37 +0.2 973,198 - MPMX19_00936 0.37 -0.9 973,198 - MPMX19_00936 0.37 -0.4 973,212 + MPMX19_00936 0.39 -1.5 973,212 + MPMX19_00936 0.39 +0.3 973,212 + MPMX19_00936 0.39 -0.2 973,212 + MPMX19_00936 0.39 +0.3 973,213 - MPMX19_00936 0.39 -1.6 973,213 - MPMX19_00936 0.39 +0.7 973,349 + MPMX19_00936 0.53 -1.0 973,349 + MPMX19_00936 0.53 -0.4 973,349 + MPMX19_00936 0.53 -0.2 973,349 + MPMX19_00936 0.53 -0.1 973,350 - MPMX19_00936 0.53 +0.2 973,350 - MPMX19_00936 0.53 -1.0 973,350 - MPMX19_00936 0.53 -0.2 973,350 - MPMX19_00936 0.53 -0.9 973,350 - MPMX19_00936 0.53 +0.2 973,350 - MPMX19_00936 0.53 +0.2 973,350 - MPMX19_00936 0.53 -0.6 973,350 - MPMX19_00936 0.53 -0.8 973,350 - MPMX19_00936 0.53 +2.0 973,350 - MPMX19_00936 0.53 -0.9 973,350 - MPMX19_00936 0.53 -1.9
Or see this region's nucleotide sequence