Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00746 and MPMX19_00747 are separated by 260 nucleotides MPMX19_00747 and MPMX19_00748 are separated by 141 nucleotides MPMX19_00748 and MPMX19_00749 are separated by 72 nucleotides MPMX19_00749 and MPMX19_00750 overlap by 10 nucleotides
MPMX19_00746: MPMX19_00746 - hypothetical protein, at 764,445 to 764,675
_00746
MPMX19_00747: MPMX19_00747 - Organic hydroperoxide resistance protein OhrB, at 764,936 to 765,355
_00747
MPMX19_00748: MPMX19_00748 - Organic hydroperoxide resistance transcriptional regulator, at 765,497 to 765,955
_00748
MPMX19_00749: MPMX19_00749 - hypothetical protein, at 766,028 to 766,630
_00749
MPMX19_00750: MPMX19_00750 - Haloalkane dehalogenase 2, at 766,621 to 767,601
_00750
Position (kb) 765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.815 kb on + strand at 764.816 kb on - strand at 764.816 kb on - strand at 764.948 kb on + strand at 764.948 kb on + strand at 764.948 kb on + strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 765.093 kb on - strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.626 kb on + strand, within MPMX19_00748 at 765.626 kb on + strand, within MPMX19_00748 at 765.953 kb on + strand at 765.954 kb on - strand at 765.954 kb on - strand at 765.954 kb on - strand at 765.954 kb on - strand at 766.278 kb on - strand, within MPMX19_00749 at 766.278 kb on - strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.340 kb on - strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.622 kb on + strand at 766.622 kb on + strand at 766.622 kb on + strand at 766.622 kb on + strand at 766.622 kb on + strand at 766.623 kb on - strand at 766.623 kb on - strand at 766.623 kb on - strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.847 kb on + strand, within MPMX19_00750 at 766.848 kb on - strand, within MPMX19_00750
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 764,517 + MPMX19_00746 0.31 +0.4 764,517 + MPMX19_00746 0.31 +0.4 764,517 + MPMX19_00746 0.31 -0.7 764,517 + MPMX19_00746 0.31 -0.6 764,517 + MPMX19_00746 0.31 -1.3 764,518 - MPMX19_00746 0.32 -1.2 764,518 - MPMX19_00746 0.32 +0.6 764,518 - MPMX19_00746 0.32 -1.2 764,518 - MPMX19_00746 0.32 -1.5 764,518 - MPMX19_00746 0.32 -1.8 764,518 - MPMX19_00746 0.32 -0.9 764,758 + -1.2 764,758 + -0.0 764,758 + +0.2 764,758 + -0.6 764,758 + +0.1 764,758 + +0.8 764,758 + +1.3 764,758 + -1.0 764,758 + +0.1 764,758 + -0.3 764,758 + -0.2 764,758 + -1.9 764,758 + -0.4 764,758 + -0.7 764,758 + +0.8 764,758 + -0.2 764,758 + -1.4 764,758 + -0.7 764,758 + +0.8 764,758 + +0.6 764,759 - +0.6 764,759 - -0.1 764,759 - -0.2 764,759 - -0.6 764,759 - -2.2 764,759 - -0.4 764,759 - -1.3 764,759 - -0.4 764,759 - +1.3 764,759 - -0.6 764,759 - +0.1 764,759 - -0.2 764,759 - +0.2 764,759 - -1.6 764,759 - +0.3 764,759 - -0.1 764,759 - -0.2 764,759 - +1.0 764,759 - -1.2 764,759 - -2.0 764,760 + -0.7 764,760 + -0.2 764,760 + -0.0 764,760 + +1.0 764,760 + -1.8 764,760 + -0.8 764,760 + -0.0 764,760 + -0.3 764,760 + -2.2 764,760 + -0.3 764,760 + +0.3 764,760 + +0.7 764,761 - -1.6 764,761 - -0.2 764,761 - -1.1 764,761 - -0.9 764,761 - -1.0 764,761 - -0.1 764,761 - +1.2 764,761 - -0.8 764,761 - -0.6 764,761 - +0.2 764,761 - -1.9 764,761 - +0.9 764,761 - +1.0 764,761 - +0.1 764,761 - -2.0 764,761 - +0.6 764,761 - +0.1 764,761 - +0.3 764,815 + -0.9 764,816 - -1.6 764,816 - -0.4 764,948 + +0.0 764,948 + +1.0 764,948 + -1.6 764,949 - -0.2 764,949 - -1.9 764,949 - -1.6 764,949 - +0.7 764,949 - -1.2 764,949 - -0.3 765,093 - MPMX19_00747 0.37 -0.7 765,292 + MPMX19_00747 0.85 -0.9 765,292 + MPMX19_00747 0.85 +0.2 765,292 + MPMX19_00747 0.85 -0.8 765,292 + MPMX19_00747 0.85 -1.0 765,293 - MPMX19_00747 0.85 -0.3 765,293 - MPMX19_00747 0.85 -0.2 765,293 - MPMX19_00747 0.85 -0.7 765,293 - MPMX19_00747 0.85 -1.4 765,293 - MPMX19_00747 0.85 -0.7 765,305 + MPMX19_00747 0.88 -1.9 765,305 + MPMX19_00747 0.88 -0.7 765,305 + MPMX19_00747 0.88 -1.3 765,305 + MPMX19_00747 0.88 -0.4 765,305 + MPMX19_00747 0.88 -1.8 765,306 - MPMX19_00747 0.88 +0.4 765,306 - MPMX19_00747 0.88 +0.4 765,306 - MPMX19_00747 0.88 -0.2 765,306 - MPMX19_00747 0.88 -0.4 765,554 + MPMX19_00748 0.12 -0.4 765,554 + MPMX19_00748 0.12 -0.6 765,554 + MPMX19_00748 0.12 -1.4 765,554 + MPMX19_00748 0.12 -1.6 765,554 + MPMX19_00748 0.12 -1.6 765,617 + MPMX19_00748 0.26 -1.0 765,617 + MPMX19_00748 0.26 -0.0 765,617 + MPMX19_00748 0.26 -1.2 765,617 + MPMX19_00748 0.26 -1.5 765,617 + MPMX19_00748 0.26 -1.0 765,617 + MPMX19_00748 0.26 -1.6 765,617 + MPMX19_00748 0.26 -0.2 765,626 + MPMX19_00748 0.28 -1.1 765,626 + MPMX19_00748 0.28 -0.4 765,953 + -0.2 765,954 - +0.3 765,954 - -0.3 765,954 - -1.4 765,954 - +0.2 766,278 - MPMX19_00749 0.41 +2.2 766,278 - MPMX19_00749 0.41 -0.3 766,307 + MPMX19_00749 0.46 -0.5 766,307 + MPMX19_00749 0.46 -1.2 766,307 + MPMX19_00749 0.46 -0.3 766,307 + MPMX19_00749 0.46 -2.0 766,307 + MPMX19_00749 0.46 +0.1 766,307 + MPMX19_00749 0.46 +0.3 766,307 + MPMX19_00749 0.46 -1.8 766,308 - MPMX19_00749 0.46 +0.7 766,308 - MPMX19_00749 0.46 -1.9 766,308 - MPMX19_00749 0.46 +0.7 766,308 - MPMX19_00749 0.46 -0.2 766,308 - MPMX19_00749 0.46 +0.1 766,308 - MPMX19_00749 0.46 -0.0 766,308 - MPMX19_00749 0.46 -0.2 766,308 - MPMX19_00749 0.46 -0.3 766,308 - MPMX19_00749 0.46 -2.7 766,308 - MPMX19_00749 0.46 -1.1 766,308 - MPMX19_00749 0.46 -0.3 766,340 - MPMX19_00749 0.52 +0.5 766,376 + MPMX19_00749 0.58 -1.9 766,376 + MPMX19_00749 0.58 -0.5 766,376 + MPMX19_00749 0.58 -0.0 766,376 + MPMX19_00749 0.58 -0.8 766,376 + MPMX19_00749 0.58 -1.2 766,376 + MPMX19_00749 0.58 -0.0 766,376 + MPMX19_00749 0.58 +0.5 766,376 + MPMX19_00749 0.58 +0.7 766,376 + MPMX19_00749 0.58 +0.2 766,376 + MPMX19_00749 0.58 -0.4 766,376 + MPMX19_00749 0.58 +0.6 766,376 + MPMX19_00749 0.58 -0.8 766,376 + MPMX19_00749 0.58 +0.6 766,376 + MPMX19_00749 0.58 -0.2 766,376 + MPMX19_00749 0.58 -0.3 766,376 + MPMX19_00749 0.58 -0.8 766,376 + MPMX19_00749 0.58 -0.1 766,376 + MPMX19_00749 0.58 -1.7 766,376 + MPMX19_00749 0.58 -0.7 766,376 + MPMX19_00749 0.58 -3.1 766,377 - MPMX19_00749 0.58 -0.9 766,377 - MPMX19_00749 0.58 -0.9 766,377 - MPMX19_00749 0.58 -0.4 766,377 - MPMX19_00749 0.58 -0.2 766,377 - MPMX19_00749 0.58 -0.8 766,377 - MPMX19_00749 0.58 -0.7 766,377 - MPMX19_00749 0.58 -0.2 766,377 - MPMX19_00749 0.58 +0.6 766,377 - MPMX19_00749 0.58 -0.8 766,377 - MPMX19_00749 0.58 -1.4 766,451 + MPMX19_00749 0.70 -0.9 766,451 + MPMX19_00749 0.70 -0.7 766,451 + MPMX19_00749 0.70 +0.8 766,451 + MPMX19_00749 0.70 +1.0 766,451 + MPMX19_00749 0.70 -1.2 766,451 + MPMX19_00749 0.70 -1.1 766,451 + MPMX19_00749 0.70 -1.9 766,451 + MPMX19_00749 0.70 -0.5 766,451 + MPMX19_00749 0.70 -0.2 766,451 + MPMX19_00749 0.70 -1.1 766,451 + MPMX19_00749 0.70 -1.1 766,451 + MPMX19_00749 0.70 -0.8 766,451 + MPMX19_00749 0.70 -1.7 766,452 - MPMX19_00749 0.70 -0.0 766,452 - MPMX19_00749 0.70 -0.4 766,452 - MPMX19_00749 0.70 +0.3 766,452 - MPMX19_00749 0.70 -1.0 766,452 - MPMX19_00749 0.70 +0.6 766,452 - MPMX19_00749 0.70 -0.0 766,452 - MPMX19_00749 0.70 +0.2 766,529 + MPMX19_00749 0.83 -1.1 766,529 + MPMX19_00749 0.83 +0.7 766,529 + MPMX19_00749 0.83 -0.9 766,529 + MPMX19_00749 0.83 +0.1 766,529 + MPMX19_00749 0.83 -0.2 766,529 + MPMX19_00749 0.83 -0.1 766,530 - MPMX19_00749 0.83 -1.2 766,530 - MPMX19_00749 0.83 -0.4 766,530 - MPMX19_00749 0.83 -1.4 766,530 - MPMX19_00749 0.83 +0.4 766,530 - MPMX19_00749 0.83 -0.6 766,530 - MPMX19_00749 0.83 +0.2 766,530 - MPMX19_00749 0.83 -0.0 766,530 - MPMX19_00749 0.83 -0.6 766,530 - MPMX19_00749 0.83 -1.8 766,622 + -2.0 766,622 + -1.2 766,622 + -1.1 766,622 + -1.2 766,622 + -1.4 766,623 - -0.8 766,623 - -1.3 766,623 - -2.0 766,703 + -0.8 766,703 + +0.1 766,703 + -1.8 766,703 + -1.2 766,703 + -0.3 766,703 + -0.8 766,703 + -1.6 766,704 - +0.7 766,704 - -0.9 766,704 - +2.0 766,704 - -1.6 766,704 - -0.9 766,704 - -1.4 766,704 - -1.3 766,704 - -0.1 766,704 - -1.1 766,847 + MPMX19_00750 0.23 -1.7 766,848 - MPMX19_00750 0.23 -0.2
Or see this region's nucleotide sequence