Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00682 and MPMX19_00683 are separated by 145 nucleotides MPMX19_00683 and MPMX19_00684 are separated by 3 nucleotides MPMX19_00684 and MPMX19_00685 are separated by 167 nucleotides MPMX19_00685 and MPMX19_00686 are separated by 110 nucleotides
MPMX19_00682: MPMX19_00682 - putative membrane transporter protein YfcA, at 705,076 to 705,882
_00682
MPMX19_00683: MPMX19_00683 - Thiamine-phosphate synthase, at 706,028 to 706,699
_00683
MPMX19_00684: MPMX19_00684 - Fructose-bisphosphate aldolase class 1, at 706,703 to 707,632
_00684
MPMX19_00685: MPMX19_00685 - hypothetical protein, at 707,800 to 708,036
_00685
MPMX19_00686: MPMX19_00686 - hypothetical protein, at 708,147 to 708,788
_00686
Position (kb) 706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.999 kb on + strand at 707.714 kb on + strand at 707.714 kb on + strand at 707.714 kb on + strand at 707.714 kb on + strand at 707.715 kb on - strand at 707.715 kb on - strand at 707.715 kb on - strand at 707.715 kb on - strand at 707.715 kb on - strand at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.838 kb on - strand, within MPMX19_00685 at 707.838 kb on - strand, within MPMX19_00685 at 708.087 kb on + strand at 708.088 kb on - strand at 708.088 kb on - strand at 708.088 kb on - strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.099 kb on - strand at 708.099 kb on - strand at 708.099 kb on - strand at 708.099 kb on - strand at 708.099 kb on - strand at 708.137 kb on + strand at 708.180 kb on + strand at 708.181 kb on - strand at 708.181 kb on - strand at 708.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 705,902 + -0.8 705,902 + -1.7 705,902 + -0.1 705,902 + -1.4 705,902 + -0.0 705,902 + +0.6 705,902 + -1.6 705,902 + +0.3 705,902 + -0.9 705,902 + -0.7 705,902 + +0.1 705,902 + -0.8 705,902 + -1.0 705,903 - -0.4 705,903 - -0.8 705,903 - +0.0 705,903 - -0.8 705,903 - -0.4 705,903 - -0.2 705,903 - -2.3 705,903 - -2.0 705,953 + -2.2 705,953 + +1.2 705,953 + -0.0 705,953 + -0.0 705,953 + +0.1 705,953 + +0.1 705,953 + +0.2 705,953 + +0.8 705,953 + -0.2 705,953 + -1.6 705,953 + +0.1 705,953 + +0.0 705,953 + -0.3 705,953 + -1.0 705,953 + +0.2 705,953 + +1.0 705,954 - +1.2 705,954 - +0.2 705,954 - +1.2 705,954 - -0.7 705,954 - -2.1 705,954 - +0.6 705,954 - +0.3 705,954 - -0.4 705,954 - -1.6 705,954 - +0.1 705,954 - -1.4 705,956 + -0.2 705,956 + +0.7 705,956 + -1.0 705,956 + +0.2 705,956 + -0.2 705,956 + -0.8 705,956 + -1.2 705,956 + -0.6 705,956 + -0.1 705,957 - -1.2 705,957 - -1.0 705,957 - -1.4 705,957 - -1.7 705,957 - -0.5 705,957 - +0.8 705,957 - +0.3 705,957 - -0.9 705,957 - -1.8 705,957 - -0.8 705,957 - -2.5 705,957 - +0.2 705,957 - +1.2 705,957 - -0.3 705,957 - +0.8 705,957 - -0.2 705,957 - -1.5 705,957 - -1.9 705,999 + -0.0 707,714 + +0.3 707,714 + -0.6 707,714 + +0.6 707,714 + -0.4 707,715 - -0.2 707,715 - -0.3 707,715 - -1.7 707,715 - +0.6 707,715 - +0.6 707,828 + MPMX19_00685 0.12 -1.4 707,828 + MPMX19_00685 0.12 -0.5 707,828 + MPMX19_00685 0.12 -1.5 707,828 + MPMX19_00685 0.12 -1.0 707,828 + MPMX19_00685 0.12 -0.6 707,828 + MPMX19_00685 0.12 +0.6 707,828 + MPMX19_00685 0.12 -0.7 707,828 + MPMX19_00685 0.12 +0.7 707,828 + MPMX19_00685 0.12 -0.4 707,828 + MPMX19_00685 0.12 -0.7 707,828 + MPMX19_00685 0.12 -0.2 707,829 - MPMX19_00685 0.12 -0.0 707,829 - MPMX19_00685 0.12 +0.6 707,829 - MPMX19_00685 0.12 -0.3 707,829 - MPMX19_00685 0.12 +0.4 707,829 - MPMX19_00685 0.12 -0.4 707,829 - MPMX19_00685 0.12 -0.5 707,838 - MPMX19_00685 0.16 -1.0 707,838 - MPMX19_00685 0.16 -3.2 708,087 + -1.2 708,088 - -0.7 708,088 - -1.9 708,088 - +0.2 708,098 + -0.4 708,098 + +0.0 708,098 + -0.2 708,098 + +0.8 708,098 + +0.5 708,098 + -1.7 708,098 + +0.8 708,099 - -0.0 708,099 - -0.2 708,099 - -0.3 708,099 - +0.5 708,099 - -0.8 708,137 + +0.5 708,180 + +0.9 708,181 - -1.9 708,181 - -1.3 708,181 - -1.6
Or see this region's nucleotide sequence