Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00615

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00614 and MPMX19_00615 are separated by 351 nucleotidesMPMX19_00615 and MPMX19_00616 are separated by 317 nucleotidesMPMX19_00616 and MPMX19_00617 overlap by 17 nucleotides MPMX19_00614: MPMX19_00614 - Cell division protein ZapE, at 629,482 to 630,654 _00614 MPMX19_00615: MPMX19_00615 - hypothetical protein, at 631,006 to 632,703 _00615 MPMX19_00616: MPMX19_00616 - hypothetical protein, at 633,021 to 633,386 _00616 MPMX19_00617: MPMX19_00617 - Lipoyl synthase, at 633,370 to 634,290 _00617 Position (kb) 631 632 633Strain fitness (log2 ratio) -2 -1 0 1 2 3at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.073 kb on + strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.074 kb on - strand, within MPMX19_00614at 630.129 kb on + strand, within MPMX19_00614at 630.129 kb on + strand, within MPMX19_00614at 630.129 kb on + strand, within MPMX19_00614at 630.129 kb on + strand, within MPMX19_00614at 630.129 kb on + strand, within MPMX19_00614at 630.129 kb on + strand, within MPMX19_00614at 630.129 kb on + strand, within MPMX19_00614at 630.129 kb on + strand, within MPMX19_00614at 630.129 kb on + strand, within MPMX19_00614at 630.129 kb on + strand, within MPMX19_00614at 630.130 kb on - strand, within MPMX19_00614at 630.130 kb on - strand, within MPMX19_00614at 630.130 kb on - strand, within MPMX19_00614at 630.130 kb on - strand, within MPMX19_00614at 630.130 kb on - strand, within MPMX19_00614at 630.130 kb on - strand, within MPMX19_00614at 630.130 kb on - strand, within MPMX19_00614at 630.199 kb on + strand, within MPMX19_00614at 630.199 kb on + strand, within MPMX19_00614at 630.199 kb on + strand, within MPMX19_00614at 630.199 kb on + strand, within MPMX19_00614at 630.199 kb on + strand, within MPMX19_00614at 630.199 kb on + strand, within MPMX19_00614at 630.199 kb on + strand, within MPMX19_00614at 630.199 kb on + strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.200 kb on - strand, within MPMX19_00614at 630.391 kb on + strand, within MPMX19_00614at 630.391 kb on + strand, within MPMX19_00614at 630.391 kb on + strand, within MPMX19_00614at 630.391 kb on + strand, within MPMX19_00614at 630.392 kb on - strand, within MPMX19_00614at 630.392 kb on - strand, within MPMX19_00614at 630.392 kb on - strand, within MPMX19_00614at 630.392 kb on - strand, within MPMX19_00614at 630.392 kb on - strand, within MPMX19_00614at 630.502 kb on + strand, within MPMX19_00614at 630.502 kb on + strand, within MPMX19_00614at 630.502 kb on + strand, within MPMX19_00614at 630.502 kb on + strand, within MPMX19_00614at 630.503 kb on - strand, within MPMX19_00614at 630.503 kb on - strand, within MPMX19_00614at 630.503 kb on - strand, within MPMX19_00614at 630.503 kb on - strand, within MPMX19_00614at 630.503 kb on - strand, within MPMX19_00614at 630.503 kb on - strand, within MPMX19_00614at 630.503 kb on - strand, within MPMX19_00614at 630.503 kb on - strand, within MPMX19_00614at 630.628 kb on + strandat 630.628 kb on + strandat 630.628 kb on + strandat 630.628 kb on + strandat 630.628 kb on + strandat 630.628 kb on + strandat 630.628 kb on + strandat 630.629 kb on - strandat 630.629 kb on - strandat 630.629 kb on - strandat 630.629 kb on - strandat 630.877 kb on + strandat 630.877 kb on + strandat 630.944 kb on + strandat 630.973 kb on + strandat 630.973 kb on + strandat 630.974 kb on - strandat 630.985 kb on + strandat 630.986 kb on - strandat 630.986 kb on - strandat 630.986 kb on - strandat 631.138 kb on + strandat 631.138 kb on + strandat 631.138 kb on + strandat 631.138 kb on + strandat 631.138 kb on + strandat 631.139 kb on - strandat 631.384 kb on + strand, within MPMX19_00615at 631.384 kb on + strand, within MPMX19_00615at 631.384 kb on + strand, within MPMX19_00615at 631.385 kb on - strand, within MPMX19_00615at 631.470 kb on + strand, within MPMX19_00615at 631.470 kb on + strand, within MPMX19_00615at 631.470 kb on + strand, within MPMX19_00615at 631.470 kb on + strand, within MPMX19_00615at 631.470 kb on + strand, within MPMX19_00615at 631.470 kb on + strand, within MPMX19_00615at 631.471 kb on - strand, within MPMX19_00615at 631.471 kb on - strand, within MPMX19_00615at 631.471 kb on - strand, within MPMX19_00615at 631.471 kb on - strand, within MPMX19_00615at 631.471 kb on - strand, within MPMX19_00615at 632.707 kb on + strandat 632.896 kb on + strandat 632.896 kb on + strandat 632.897 kb on - strandat 632.897 kb on - strandat 632.897 kb on - strandat 632.897 kb on - strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.998 kb on + strandat 632.998 kb on + strandat 632.998 kb on + strandat 632.998 kb on + strandat 632.998 kb on + strandat 632.999 kb on - strandat 632.999 kb on - strandat 632.999 kb on - strandat 633.150 kb on + strand, within MPMX19_00616at 633.150 kb on + strand, within MPMX19_00616at 633.150 kb on + strand, within MPMX19_00616at 633.150 kb on + strand, within MPMX19_00616at 633.150 kb on + strand, within MPMX19_00616at 633.151 kb on - strand, within MPMX19_00616at 633.151 kb on - strand, within MPMX19_00616at 633.151 kb on - strand, within MPMX19_00616at 633.151 kb on - strand, within MPMX19_00616at 633.153 kb on + strand, within MPMX19_00616at 633.153 kb on + strand, within MPMX19_00616at 633.153 kb on + strand, within MPMX19_00616at 633.153 kb on + strand, within MPMX19_00616at 633.154 kb on - strand, within MPMX19_00616at 633.154 kb on - strand, within MPMX19_00616at 633.154 kb on - strand, within MPMX19_00616at 633.154 kb on - strand, within MPMX19_00616at 633.154 kb on - strand, within MPMX19_00616at 633.160 kb on - strand, within MPMX19_00616at 633.231 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.384 kb on + strandat 633.384 kb on + strandat 633.384 kb on + strandat 633.385 kb on - strandat 633.385 kb on - strandat 633.498 kb on - strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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630,073 + MPMX19_00614 0.50 -2.0
630,073 + MPMX19_00614 0.50 +0.6
630,073 + MPMX19_00614 0.50 -0.0
630,073 + MPMX19_00614 0.50 -1.3
630,073 + MPMX19_00614 0.50 -2.3
630,073 + MPMX19_00614 0.50 -0.6
630,073 + MPMX19_00614 0.50 -2.3
630,073 + MPMX19_00614 0.50 -0.8
630,073 + MPMX19_00614 0.50 -0.0
630,073 + MPMX19_00614 0.50 -0.6
630,073 + MPMX19_00614 0.50 -0.8
630,073 + MPMX19_00614 0.50 +0.4
630,073 + MPMX19_00614 0.50 -0.8
630,073 + MPMX19_00614 0.50 -0.4
630,073 + MPMX19_00614 0.50 -0.5
630,074 - MPMX19_00614 0.50 -0.3
630,074 - MPMX19_00614 0.50 +0.1
630,074 - MPMX19_00614 0.50 +0.8
630,074 - MPMX19_00614 0.50 -1.0
630,074 - MPMX19_00614 0.50 +0.6
630,074 - MPMX19_00614 0.50 +1.6
630,074 - MPMX19_00614 0.50 -0.3
630,074 - MPMX19_00614 0.50 +0.2
630,074 - MPMX19_00614 0.50 -1.3
630,074 - MPMX19_00614 0.50 -2.5
630,074 - MPMX19_00614 0.50 +0.6
630,074 - MPMX19_00614 0.50 +0.2
630,074 - MPMX19_00614 0.50 +0.6
630,074 - MPMX19_00614 0.50 -1.6
630,074 - MPMX19_00614 0.50 -0.8
630,074 - MPMX19_00614 0.50 +0.5
630,074 - MPMX19_00614 0.50 -0.8
630,074 - MPMX19_00614 0.50 -0.4
630,074 - MPMX19_00614 0.50 +0.1
630,129 + MPMX19_00614 0.55 -1.0
630,129 + MPMX19_00614 0.55 -0.4
630,129 + MPMX19_00614 0.55 +3.1
630,129 + MPMX19_00614 0.55 +0.1
630,129 + MPMX19_00614 0.55 -0.3
630,129 + MPMX19_00614 0.55 -0.0
630,129 + MPMX19_00614 0.55 +1.6
630,129 + MPMX19_00614 0.55 -0.2
630,129 + MPMX19_00614 0.55 +0.2
630,129 + MPMX19_00614 0.55 -0.1
630,130 - MPMX19_00614 0.55 +0.4
630,130 - MPMX19_00614 0.55 +0.7
630,130 - MPMX19_00614 0.55 -1.4
630,130 - MPMX19_00614 0.55 +1.3
630,130 - MPMX19_00614 0.55 -0.3
630,130 - MPMX19_00614 0.55 +1.0
630,130 - MPMX19_00614 0.55 -0.9
630,199 + MPMX19_00614 0.61 -0.0
630,199 + MPMX19_00614 0.61 +0.2
630,199 + MPMX19_00614 0.61 +0.6
630,199 + MPMX19_00614 0.61 +1.6
630,199 + MPMX19_00614 0.61 +1.6
630,199 + MPMX19_00614 0.61 +0.2
630,199 + MPMX19_00614 0.61 +0.6
630,199 + MPMX19_00614 0.61 -1.5
630,200 - MPMX19_00614 0.61 -0.3
630,200 - MPMX19_00614 0.61 -0.8
630,200 - MPMX19_00614 0.61 -0.3
630,200 - MPMX19_00614 0.61 -1.8
630,200 - MPMX19_00614 0.61 -1.8
630,200 - MPMX19_00614 0.61 +0.1
630,200 - MPMX19_00614 0.61 +0.2
630,200 - MPMX19_00614 0.61 +1.7
630,200 - MPMX19_00614 0.61 -0.3
630,200 - MPMX19_00614 0.61 -0.0
630,200 - MPMX19_00614 0.61 +0.3
630,200 - MPMX19_00614 0.61 +0.1
630,391 + MPMX19_00614 0.77 -1.0
630,391 + MPMX19_00614 0.77 +0.6
630,391 + MPMX19_00614 0.77 -0.4
630,391 + MPMX19_00614 0.77 +1.0
630,392 - MPMX19_00614 0.78 -0.2
630,392 - MPMX19_00614 0.78 +0.9
630,392 - MPMX19_00614 0.78 -0.3
630,392 - MPMX19_00614 0.78 +0.2
630,392 - MPMX19_00614 0.78 -0.8
630,502 + MPMX19_00614 0.87 -1.8
630,502 + MPMX19_00614 0.87 -0.3
630,502 + MPMX19_00614 0.87 -0.6
630,502 + MPMX19_00614 0.87 -0.4
630,503 - MPMX19_00614 0.87 +1.8
630,503 - MPMX19_00614 0.87 -1.9
630,503 - MPMX19_00614 0.87 -0.3
630,503 - MPMX19_00614 0.87 +1.0
630,503 - MPMX19_00614 0.87 -1.0
630,503 - MPMX19_00614 0.87 +0.7
630,503 - MPMX19_00614 0.87 -1.3
630,503 - MPMX19_00614 0.87 +0.6
630,628 + +1.4
630,628 + -1.0
630,628 + -0.7
630,628 + -0.8
630,628 + -0.5
630,628 + -0.9
630,628 + -0.3
630,629 - -1.2
630,629 - +0.3
630,629 - +1.2
630,629 - -0.0
630,877 + -0.4
630,877 + -1.0
630,944 + +0.4
630,973 + -0.9
630,973 + +0.3
630,974 - +0.1
630,985 + -0.9
630,986 - -0.4
630,986 - -0.5
630,986 - -2.0
631,138 + +0.9
631,138 + +0.0
631,138 + +1.6
631,138 + -0.6
631,138 + -0.8
631,139 - -1.3
631,384 + MPMX19_00615 0.22 -1.6
631,384 + MPMX19_00615 0.22 +0.2
631,384 + MPMX19_00615 0.22 +0.4
631,385 - MPMX19_00615 0.22 -1.8
631,470 + MPMX19_00615 0.27 -1.1
631,470 + MPMX19_00615 0.27 +0.4
631,470 + MPMX19_00615 0.27 -1.6
631,470 + MPMX19_00615 0.27 -0.4
631,470 + MPMX19_00615 0.27 +0.8
631,470 + MPMX19_00615 0.27 -0.7
631,471 - MPMX19_00615 0.27 -0.5
631,471 - MPMX19_00615 0.27 +1.1
631,471 - MPMX19_00615 0.27 -0.4
631,471 - MPMX19_00615 0.27 +0.2
631,471 - MPMX19_00615 0.27 -1.4
632,707 + -2.6
632,896 + -0.1
632,896 + -1.3
632,897 - -0.0
632,897 - -0.4
632,897 - -1.0
632,897 - -0.8
632,938 + +0.8
632,938 + -0.3
632,938 + -1.0
632,938 + +0.5
632,938 + -0.9
632,938 + -0.6
632,938 + -0.1
632,938 + -0.5
632,938 + +0.0
632,938 + -0.2
632,938 + +0.7
632,938 + +0.9
632,938 + +0.4
632,938 + -0.7
632,938 + +0.8
632,938 + -0.9
632,938 + -0.3
632,938 + -1.0
632,938 + -0.0
632,939 - +0.4
632,939 - -0.1
632,939 - -0.4
632,939 - -1.8
632,939 - +1.0
632,939 - -2.4
632,939 - -1.2
632,939 - -0.1
632,939 - -2.4
632,939 - -0.6
632,939 - -0.9
632,939 - -0.2
632,939 - +0.3
632,939 - -0.6
632,998 + -0.5
632,998 + -0.9
632,998 + -0.5
632,998 + +0.6
632,998 + +1.0
632,999 - -0.9
632,999 - -0.8
632,999 - -0.9
633,150 + MPMX19_00616 0.35 -0.4
633,150 + MPMX19_00616 0.35 -1.8
633,150 + MPMX19_00616 0.35 -0.7
633,150 + MPMX19_00616 0.35 -1.1
633,150 + MPMX19_00616 0.35 -0.4
633,151 - MPMX19_00616 0.36 -1.8
633,151 - MPMX19_00616 0.36 +0.6
633,151 - MPMX19_00616 0.36 -0.8
633,151 - MPMX19_00616 0.36 -1.8
633,153 + MPMX19_00616 0.36 -1.3
633,153 + MPMX19_00616 0.36 -1.3
633,153 + MPMX19_00616 0.36 -1.0
633,153 + MPMX19_00616 0.36 -0.4
633,154 - MPMX19_00616 0.36 -0.6
633,154 - MPMX19_00616 0.36 -0.3
633,154 - MPMX19_00616 0.36 +0.6
633,154 - MPMX19_00616 0.36 -0.8
633,154 - MPMX19_00616 0.36 -1.1
633,160 - MPMX19_00616 0.38 -0.4
633,231 + MPMX19_00616 0.57 +0.2
633,258 + MPMX19_00616 0.65 -1.6
633,258 + MPMX19_00616 0.65 -0.8
633,258 + MPMX19_00616 0.65 -0.4
633,258 + MPMX19_00616 0.65 -0.1
633,258 + MPMX19_00616 0.65 -0.6
633,258 + MPMX19_00616 0.65 -1.5
633,258 + MPMX19_00616 0.65 -0.4
633,306 + MPMX19_00616 0.78 -1.3
633,306 + MPMX19_00616 0.78 -1.1
633,306 + MPMX19_00616 0.78 +0.1
633,306 + MPMX19_00616 0.78 -0.7
633,306 + MPMX19_00616 0.78 +0.6
633,306 + MPMX19_00616 0.78 -0.3
633,306 + MPMX19_00616 0.78 -1.0
633,306 + MPMX19_00616 0.78 -0.4
633,306 + MPMX19_00616 0.78 -2.3
633,306 + MPMX19_00616 0.78 -0.5
633,306 + MPMX19_00616 0.78 -1.4
633,306 + MPMX19_00616 0.78 -0.7
633,306 + MPMX19_00616 0.78 -1.1
633,307 - MPMX19_00616 0.78 +0.1
633,307 - MPMX19_00616 0.78 -0.9
633,307 - MPMX19_00616 0.78 -0.9
633,307 - MPMX19_00616 0.78 -0.2
633,307 - MPMX19_00616 0.78 -1.4
633,307 - MPMX19_00616 0.78 -0.0
633,307 - MPMX19_00616 0.78 -1.1
633,307 - MPMX19_00616 0.78 -0.3
633,307 - MPMX19_00616 0.78 -0.2
633,307 - MPMX19_00616 0.78 -0.2
633,307 - MPMX19_00616 0.78 -0.9
633,307 - MPMX19_00616 0.78 -1.4
633,307 - MPMX19_00616 0.78 +1.1
633,307 - MPMX19_00616 0.78 +0.1
633,384 + -1.6
633,384 + -1.1
633,384 + -0.1
633,385 - -1.3
633,385 - -1.2
633,498 - MPMX19_00617 0.14 +0.6
633,563 + MPMX19_00617 0.21 +1.2
633,563 + MPMX19_00617 0.21 -0.6
633,563 + MPMX19_00617 0.21 -0.4
633,563 + MPMX19_00617 0.21 -0.2
633,563 + MPMX19_00617 0.21 -0.8
633,563 + MPMX19_00617 0.21 -1.6
633,564 - MPMX19_00617 0.21 -1.2
633,564 - MPMX19_00617 0.21 -1.4
633,564 - MPMX19_00617 0.21 -1.6
633,564 - MPMX19_00617 0.21 -0.0
633,564 - MPMX19_00617 0.21 +0.1
633,564 - MPMX19_00617 0.21 -0.7

Or see this region's nucleotide sequence