Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00577 and MPMX19_00578 are separated by 48 nucleotides MPMX19_00578 and MPMX19_00579 are separated by 44 nucleotides MPMX19_00579 and MPMX19_00580 are separated by 56 nucleotides MPMX19_00580 and MPMX19_00581 are separated by 33 nucleotides
MPMX19_00577: MPMX19_00577 - Ribosomal RNA small subunit methyltransferase E, at 591,388 to 592,167
_00577
MPMX19_00578: MPMX19_00578 - Glutamate--cysteine ligase EgtA, at 592,216 to 593,580
_00578
MPMX19_00579: MPMX19_00579 - Ferredoxin-3, at 593,625 to 593,918
_00579
MPMX19_00580: MPMX19_00580 - hypothetical protein, at 593,975 to 594,175
_00580
MPMX19_00581: MPMX19_00581 - hypothetical protein, at 594,209 to 594,664
_00581
Position (kb) 592
593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 591.270 kb on + strand at 591.270 kb on + strand at 591.270 kb on + strand at 591.270 kb on + strand at 591.271 kb on - strand at 591.271 kb on - strand at 591.271 kb on - strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 593.569 kb on + strand at 593.570 kb on - strand at 593.570 kb on - strand at 593.570 kb on - strand at 593.575 kb on + strand at 593.575 kb on + strand at 593.575 kb on + strand at 593.575 kb on + strand at 593.576 kb on - strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.627 kb on - strand at 593.627 kb on - strand at 593.627 kb on - strand at 593.627 kb on - strand at 593.627 kb on - strand at 593.950 kb on - strand at 593.964 kb on + strand at 593.964 kb on + strand at 593.964 kb on + strand at 593.965 kb on - strand at 593.965 kb on - strand at 593.965 kb on - strand at 593.965 kb on - strand at 593.976 kb on + strand at 593.977 kb on - strand at 593.977 kb on - strand at 593.977 kb on - strand at 593.977 kb on - strand at 594.036 kb on + strand, within MPMX19_00580 at 594.036 kb on + strand, within MPMX19_00580 at 594.036 kb on + strand, within MPMX19_00580 at 594.036 kb on + strand, within MPMX19_00580 at 594.036 kb on + strand, within MPMX19_00580 at 594.036 kb on + strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.232 kb on - strand at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 591,270 + -1.0 591,270 + -0.3 591,270 + -0.5 591,270 + -0.3 591,271 - +1.0 591,271 - -0.4 591,271 - -0.5 591,300 + +3.5 591,300 + -1.3 591,300 + -0.0 591,300 + +0.1 591,300 + -0.2 591,301 - +0.7 591,301 - -0.8 591,301 - -0.0 591,301 - -0.7 591,301 - +0.1 591,301 - -0.6 591,301 - -1.5 591,355 + -0.2 591,355 + +0.4 591,355 + -1.9 591,355 + -1.0 591,355 + +0.2 591,355 + -2.0 591,355 + -0.0 591,355 + +0.5 591,355 + -0.3 591,355 + -0.6 591,355 + -0.3 591,355 + -1.0 591,355 + -0.6 591,355 + -0.5 591,355 + -0.5 591,355 + -0.9 591,355 + -0.8 591,356 - -0.5 591,356 - +0.2 591,356 - +1.3 591,356 - +1.7 591,356 - -1.3 591,356 - +0.1 591,356 - -0.2 591,356 - -0.6 591,356 - +0.2 591,356 - -0.9 591,356 - -0.3 591,356 - +0.9 591,356 - -3.0 591,357 + -1.3 591,357 + -1.3 591,357 + -0.0 591,357 + +0.5 591,357 + -0.0 591,357 + -0.8 591,357 + -0.7 591,357 + -1.3 591,357 + -1.0 591,357 + +0.3 591,357 + -1.0 591,357 + +0.7 591,357 + -0.7 591,357 + -1.7 591,358 - +0.7 591,358 - +0.3 591,358 - +1.0 591,358 - +0.0 591,358 - +0.4 591,358 - -0.3 591,358 - -0.7 591,358 - -0.7 591,358 - -1.0 591,358 - -2.6 591,358 - +2.0 591,358 - -0.2 591,358 - +0.5 591,358 - -1.2 591,415 + -0.0 591,415 + -0.6 591,415 + -1.2 591,415 + -0.8 591,415 + -0.3 591,415 + -0.8 591,415 + +1.2 591,415 + -1.5 591,415 + +0.4 591,415 + -0.9 591,415 + -1.6 591,416 - -0.5 591,416 - +1.4 591,416 - -0.1 591,416 - -0.3 591,416 - -0.7 591,416 - -0.0 591,416 - +0.5 591,416 - -0.9 591,416 - +0.3 591,416 - -0.8 591,416 - +1.5 591,416 - -0.3 591,883 + MPMX19_00577 0.63 +0.5 591,883 + MPMX19_00577 0.63 +2.0 591,883 + MPMX19_00577 0.63 -0.6 591,883 + MPMX19_00577 0.63 -0.3 591,883 + MPMX19_00577 0.63 -0.6 591,883 + MPMX19_00577 0.63 +1.5 591,883 + MPMX19_00577 0.63 +2.5 591,883 + MPMX19_00577 0.63 -0.3 591,883 + MPMX19_00577 0.63 -0.2 591,883 + MPMX19_00577 0.63 +0.5 591,884 - MPMX19_00577 0.64 -0.6 591,884 - MPMX19_00577 0.64 -0.3 591,884 - MPMX19_00577 0.64 -0.0 591,884 - MPMX19_00577 0.64 +0.5 591,884 - MPMX19_00577 0.64 +0.5 591,884 - MPMX19_00577 0.64 +0.4 591,884 - MPMX19_00577 0.64 -0.0 591,884 - MPMX19_00577 0.64 -0.2 591,884 - MPMX19_00577 0.64 +0.1 591,884 - MPMX19_00577 0.64 -1.5 591,884 - MPMX19_00577 0.64 -0.2 591,884 - MPMX19_00577 0.64 -0.2 591,884 - MPMX19_00577 0.64 +0.2 591,884 - MPMX19_00577 0.64 -0.3 591,884 - MPMX19_00577 0.64 +1.4 593,569 + +0.3 593,570 - +0.1 593,570 - +2.0 593,570 - -0.6 593,575 + +0.8 593,575 + +0.5 593,575 + +0.2 593,575 + -0.5 593,576 - +1.0 593,626 + +0.1 593,626 + +0.5 593,626 + -0.6 593,626 + -0.5 593,626 + +0.3 593,626 + +0.0 593,626 + -1.0 593,626 + -0.4 593,627 - -1.2 593,627 - -1.1 593,627 - -0.9 593,627 - -1.3 593,627 - +0.2 593,950 - -0.5 593,964 + -0.2 593,964 + +0.2 593,964 + +0.7 593,965 - +0.7 593,965 - -0.7 593,965 - -0.3 593,965 - +0.4 593,976 + -0.5 593,977 - -0.3 593,977 - -1.2 593,977 - -0.9 593,977 - -1.0 594,036 + MPMX19_00580 0.30 -0.3 594,036 + MPMX19_00580 0.30 +0.5 594,036 + MPMX19_00580 0.30 -0.3 594,036 + MPMX19_00580 0.30 -1.2 594,036 + MPMX19_00580 0.30 -0.5 594,036 + MPMX19_00580 0.30 -1.3 594,037 - MPMX19_00580 0.31 -0.5 594,037 - MPMX19_00580 0.31 -0.6 594,037 - MPMX19_00580 0.31 -1.5 594,037 - MPMX19_00580 0.31 +1.5 594,037 - MPMX19_00580 0.31 +0.3 594,037 - MPMX19_00580 0.31 +0.3 594,037 - MPMX19_00580 0.31 +0.3 594,037 - MPMX19_00580 0.31 -0.8 594,037 - MPMX19_00580 0.31 -0.8 594,037 - MPMX19_00580 0.31 -0.5 594,037 - MPMX19_00580 0.31 +0.5 594,037 - MPMX19_00580 0.31 -1.6 594,037 - MPMX19_00580 0.31 -0.8 594,232 - -0.5 594,456 + MPMX19_00581 0.54 -0.2 594,456 + MPMX19_00581 0.54 +0.5 594,456 + MPMX19_00581 0.54 -0.6 594,456 + MPMX19_00581 0.54 +0.2 594,456 + MPMX19_00581 0.54 -1.4 594,456 + MPMX19_00581 0.54 -0.7 594,456 + MPMX19_00581 0.54 -1.0 594,456 + MPMX19_00581 0.54 -0.0 594,457 - MPMX19_00581 0.54 -0.8 594,457 - MPMX19_00581 0.54 -0.9 594,457 - MPMX19_00581 0.54 -0.3 594,457 - MPMX19_00581 0.54 -0.9 594,457 - MPMX19_00581 0.54 +0.5 594,457 - MPMX19_00581 0.54 -0.6 594,457 - MPMX19_00581 0.54 +0.5 594,457 - MPMX19_00581 0.54 +0.0 594,457 - MPMX19_00581 0.54 -0.8 594,457 - MPMX19_00581 0.54 +0.4 594,457 - MPMX19_00581 0.54 -0.5
Or see this region's nucleotide sequence