Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF800 and GFF801 are separated by 14 nucleotides GFF801 and GFF802 are separated by 199 nucleotides GFF802 and GFF803 are separated by 157 nucleotides
GFF800 - Sensor histidine kinase RcsC, at 39,457 to 40,923
GFF800
GFF801 - Transcriptional regulatory protein QseB, at 40,938 to 41,618
GFF801
GFF802 - hypothetical protein, at 41,818 to 42,012
GFF802
GFF803 - hypothetical protein, at 42,170 to 43,021
GFF803
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 40.833 kb on - strand at 40.833 kb on - strand at 40.970 kb on + strand at 40.970 kb on + strand at 40.970 kb on + strand at 40.971 kb on - strand at 40.971 kb on - strand at 40.972 kb on + strand at 40.972 kb on + strand at 40.973 kb on - strand at 40.973 kb on - strand at 40.973 kb on - strand at 40.973 kb on - strand at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.041 kb on + strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.042 kb on - strand, within GFF801 at 41.043 kb on - strand, within GFF801 at 41.058 kb on - strand, within GFF801 at 41.085 kb on + strand, within GFF801 at 41.121 kb on - strand, within GFF801 at 41.121 kb on - strand, within GFF801 at 41.249 kb on + strand, within GFF801 at 41.355 kb on + strand, within GFF801 at 41.356 kb on - strand, within GFF801 at 41.356 kb on - strand, within GFF801 at 41.486 kb on - strand, within GFF801 at 41.486 kb on - strand, within GFF801 at 41.487 kb on + strand, within GFF801 at 41.487 kb on + strand, within GFF801 at 41.487 kb on + strand, within GFF801 at 41.487 kb on + strand, within GFF801 at 41.487 kb on + strand, within GFF801 at 41.487 kb on + strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.488 kb on - strand, within GFF801 at 41.498 kb on + strand, within GFF801 at 41.499 kb on - strand, within GFF801 at 41.499 kb on - strand, within GFF801 at 41.499 kb on - strand, within GFF801 at 41.546 kb on - strand, within GFF801 at 41.546 kb on - strand, within GFF801 at 41.601 kb on + strand at 41.604 kb on + strand at 41.608 kb on - strand at 41.608 kb on - strand at 41.608 kb on - strand at 41.608 kb on - strand at 41.611 kb on - strand at 41.641 kb on + strand at 41.652 kb on + strand at 41.652 kb on + strand at 41.682 kb on + strand at 41.682 kb on + strand at 41.683 kb on - strand at 41.683 kb on - strand at 41.683 kb on - strand at 41.683 kb on - strand at 41.683 kb on - strand at 41.683 kb on - strand at 41.704 kb on + strand at 41.705 kb on - strand at 41.709 kb on + strand at 41.709 kb on + strand at 41.715 kb on + strand at 41.716 kb on - strand at 41.729 kb on + strand at 41.782 kb on - strand at 41.843 kb on + strand, within GFF802 at 41.844 kb on - strand, within GFF802 at 41.844 kb on - strand, within GFF802 at 41.844 kb on - strand, within GFF802 at 41.857 kb on + strand, within GFF802 at 41.858 kb on - strand, within GFF802 at 41.858 kb on - strand, within GFF802 at 41.858 kb on - strand, within GFF802 at 41.858 kb on - strand, within GFF802 at 41.861 kb on + strand, within GFF802 at 41.862 kb on - strand, within GFF802 at 41.862 kb on - strand, within GFF802 at 41.912 kb on + strand, within GFF802 at 41.912 kb on + strand, within GFF802 at 41.913 kb on - strand, within GFF802 at 41.913 kb on - strand, within GFF802 at 42.010 kb on + strand at 42.011 kb on - strand at 42.011 kb on - strand at 42.011 kb on - strand at 42.057 kb on - strand at 42.079 kb on + strand at 42.080 kb on - strand at 42.080 kb on - strand at 42.093 kb on - strand at 42.195 kb on - strand at 42.268 kb on - strand, within GFF803 at 42.292 kb on + strand, within GFF803 at 42.292 kb on + strand, within GFF803 at 42.292 kb on + strand, within GFF803 at 42.293 kb on - strand, within GFF803 at 42.293 kb on - strand, within GFF803 at 42.293 kb on - strand, within GFF803 at 42.293 kb on - strand, within GFF803 at 42.293 kb on - strand, within GFF803 at 42.293 kb on - strand, within GFF803 at 42.293 kb on - strand, within GFF803 at 42.342 kb on + strand, within GFF803 at 42.343 kb on - strand, within GFF803 at 42.343 kb on - strand, within GFF803 at 42.343 kb on - strand, within GFF803 at 42.350 kb on - strand, within GFF803 at 42.430 kb on - strand, within GFF803 at 42.430 kb on - strand, within GFF803 at 42.430 kb on - strand, within GFF803 at 42.430 kb on - strand, within GFF803 at 42.435 kb on + strand, within GFF803 at 42.435 kb on + strand, within GFF803 at 42.435 kb on + strand, within GFF803 at 42.435 kb on + strand, within GFF803 at 42.435 kb on + strand, within GFF803 at 42.436 kb on - strand, within GFF803 at 42.436 kb on - strand, within GFF803 at 42.436 kb on - strand, within GFF803 at 42.436 kb on - strand, within GFF803 at 42.436 kb on - strand, within GFF803 at 42.436 kb on - strand, within GFF803 at 42.437 kb on + strand, within GFF803 at 42.437 kb on + strand, within GFF803 at 42.437 kb on + strand, within GFF803 at 42.438 kb on - strand, within GFF803 at 42.438 kb on - strand, within GFF803 at 42.438 kb on - strand, within GFF803 at 42.438 kb on - strand, within GFF803 at 42.438 kb on - strand, within GFF803 at 42.622 kb on + strand, within GFF803 at 42.623 kb on - strand, within GFF803 at 42.624 kb on + strand, within GFF803 at 42.625 kb on - strand, within GFF803 at 42.625 kb on - strand, within GFF803 at 42.625 kb on - strand, within GFF803 at 42.625 kb on - strand, within GFF803 at 42.702 kb on - strand, within GFF803 at 42.743 kb on + strand, within GFF803 at 42.744 kb on - strand, within GFF803 at 42.744 kb on - strand, within GFF803 at 42.763 kb on + strand, within GFF803 at 42.763 kb on + strand, within GFF803 at 42.763 kb on + strand, within GFF803 at 42.763 kb on + strand, within GFF803 at 42.763 kb on + strand, within GFF803 at 42.764 kb on - strand, within GFF803 at 42.764 kb on - strand, within GFF803 at 42.765 kb on + strand, within GFF803 at 42.765 kb on + strand, within GFF803 at 42.765 kb on + strand, within GFF803 at 42.766 kb on - strand, within GFF803 at 42.766 kb on - strand, within GFF803 at 42.766 kb on - strand, within GFF803 at 42.766 kb on - strand, within GFF803 at 42.766 kb on - strand, within GFF803 at 42.766 kb on - strand, within GFF803 at 42.766 kb on - strand, within GFF803 at 42.816 kb on - strand, within GFF803 at 42.846 kb on - strand, within GFF803 at 42.897 kb on + strand, within GFF803 at 42.897 kb on + strand, within GFF803 at 42.950 kb on - strand at 42.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 40,833 - +0.3 40,833 - -0.4 40,970 + -0.4 40,970 + -1.1 40,970 + -2.4 40,971 - -0.6 40,971 - +0.1 40,972 + -0.1 40,972 + -0.1 40,973 - +0.9 40,973 - -0.7 40,973 - +0.3 40,973 - -1.2 41,041 + GFF801 0.15 -2.8 41,041 + GFF801 0.15 -1.7 41,041 + GFF801 0.15 -1.1 41,041 + GFF801 0.15 +0.1 41,041 + GFF801 0.15 -2.1 41,041 + GFF801 0.15 -0.5 41,041 + GFF801 0.15 -1.9 41,041 + GFF801 0.15 +1.1 41,041 + GFF801 0.15 -0.2 41,041 + GFF801 0.15 -0.1 41,041 + GFF801 0.15 -0.4 41,041 + GFF801 0.15 -0.4 41,041 + GFF801 0.15 -0.8 41,041 + GFF801 0.15 -0.3 41,041 + GFF801 0.15 -0.6 41,042 - GFF801 0.15 -1.1 41,042 - GFF801 0.15 +0.0 41,042 - GFF801 0.15 -0.9 41,042 - GFF801 0.15 +0.7 41,042 - GFF801 0.15 -1.3 41,042 - GFF801 0.15 -0.3 41,042 - GFF801 0.15 -1.4 41,042 - GFF801 0.15 -1.1 41,042 - GFF801 0.15 +0.4 41,042 - GFF801 0.15 +0.1 41,042 - GFF801 0.15 +0.3 41,042 - GFF801 0.15 -0.1 41,043 - GFF801 0.15 -0.1 41,058 - GFF801 0.18 -1.0 41,085 + GFF801 0.22 +0.1 41,121 - GFF801 0.27 -0.4 41,121 - GFF801 0.27 -2.1 41,249 + GFF801 0.46 +0.7 41,355 + GFF801 0.61 +0.5 41,356 - GFF801 0.61 -0.4 41,356 - GFF801 0.61 -1.9 41,486 - GFF801 0.80 +0.7 41,486 - GFF801 0.80 -0.7 41,487 + GFF801 0.81 -2.2 41,487 + GFF801 0.81 -0.9 41,487 + GFF801 0.81 -0.5 41,487 + GFF801 0.81 -0.4 41,487 + GFF801 0.81 -0.1 41,487 + GFF801 0.81 -2.4 41,488 - GFF801 0.81 -0.8 41,488 - GFF801 0.81 -0.7 41,488 - GFF801 0.81 -0.9 41,488 - GFF801 0.81 +0.2 41,488 - GFF801 0.81 -0.3 41,488 - GFF801 0.81 -0.5 41,488 - GFF801 0.81 -0.4 41,488 - GFF801 0.81 -1.7 41,488 - GFF801 0.81 -0.2 41,488 - GFF801 0.81 -1.5 41,488 - GFF801 0.81 -0.5 41,488 - GFF801 0.81 -0.8 41,488 - GFF801 0.81 -1.0 41,488 - GFF801 0.81 -0.6 41,488 - GFF801 0.81 -0.2 41,488 - GFF801 0.81 -0.1 41,488 - GFF801 0.81 +0.7 41,498 + GFF801 0.82 -1.1 41,499 - GFF801 0.82 -0.5 41,499 - GFF801 0.82 -0.1 41,499 - GFF801 0.82 +1.1 41,546 - GFF801 0.89 -1.9 41,546 - GFF801 0.89 -1.2 41,601 + -0.7 41,604 + +0.9 41,608 - -1.5 41,608 - -1.0 41,608 - -1.2 41,608 - -0.3 41,611 - +0.1 41,641 + +0.7 41,652 + -2.1 41,652 + -0.1 41,682 + -1.1 41,682 + -1.7 41,683 - +0.2 41,683 - -1.7 41,683 - +0.5 41,683 - -1.1 41,683 - -2.4 41,683 - -1.1 41,704 + -1.7 41,705 - +0.2 41,709 + -0.1 41,709 + +0.9 41,715 + -0.1 41,716 - -1.1 41,729 + -0.8 41,782 - +0.4 41,843 + GFF802 0.13 +0.8 41,844 - GFF802 0.13 -1.2 41,844 - GFF802 0.13 +0.3 41,844 - GFF802 0.13 -0.7 41,857 + GFF802 0.20 -0.4 41,858 - GFF802 0.21 -0.4 41,858 - GFF802 0.21 -0.1 41,858 - GFF802 0.21 -1.3 41,858 - GFF802 0.21 -0.9 41,861 + GFF802 0.22 +0.5 41,862 - GFF802 0.23 -0.6 41,862 - GFF802 0.23 -0.7 41,912 + GFF802 0.48 -1.1 41,912 + GFF802 0.48 +0.7 41,913 - GFF802 0.49 -0.5 41,913 - GFF802 0.49 -0.7 42,010 + -1.3 42,011 - -0.7 42,011 - +0.0 42,011 - -0.4 42,057 - -2.1 42,079 + -0.1 42,080 - -0.4 42,080 - -0.2 42,093 - -0.9 42,195 - -1.1 42,268 - GFF803 0.12 -0.0 42,292 + GFF803 0.14 +0.6 42,292 + GFF803 0.14 -0.7 42,292 + GFF803 0.14 -0.4 42,293 - GFF803 0.14 +0.5 42,293 - GFF803 0.14 -0.7 42,293 - GFF803 0.14 -0.7 42,293 - GFF803 0.14 -0.8 42,293 - GFF803 0.14 -1.2 42,293 - GFF803 0.14 -1.7 42,293 - GFF803 0.14 +0.2 42,342 + GFF803 0.20 -0.3 42,343 - GFF803 0.20 -0.4 42,343 - GFF803 0.20 +1.2 42,343 - GFF803 0.20 -1.1 42,350 - GFF803 0.21 -1.7 42,430 - GFF803 0.31 -0.4 42,430 - GFF803 0.31 -0.7 42,430 - GFF803 0.31 -0.8 42,430 - GFF803 0.31 -0.5 42,435 + GFF803 0.31 +0.1 42,435 + GFF803 0.31 -0.3 42,435 + GFF803 0.31 +0.9 42,435 + GFF803 0.31 -0.1 42,435 + GFF803 0.31 -0.4 42,436 - GFF803 0.31 -1.7 42,436 - GFF803 0.31 -0.9 42,436 - GFF803 0.31 -0.2 42,436 - GFF803 0.31 -0.2 42,436 - GFF803 0.31 -0.5 42,436 - GFF803 0.31 +0.0 42,437 + GFF803 0.31 -0.7 42,437 + GFF803 0.31 -1.4 42,437 + GFF803 0.31 +0.1 42,438 - GFF803 0.31 +0.2 42,438 - GFF803 0.31 -0.1 42,438 - GFF803 0.31 +1.2 42,438 - GFF803 0.31 +0.3 42,438 - GFF803 0.31 -1.1 42,622 + GFF803 0.53 -1.4 42,623 - GFF803 0.53 -2.1 42,624 + GFF803 0.53 -0.5 42,625 - GFF803 0.53 -0.9 42,625 - GFF803 0.53 +0.1 42,625 - GFF803 0.53 -1.9 42,625 - GFF803 0.53 -0.5 42,702 - GFF803 0.62 -0.6 42,743 + GFF803 0.67 -1.1 42,744 - GFF803 0.67 +0.4 42,744 - GFF803 0.67 -0.5 42,763 + GFF803 0.70 -0.1 42,763 + GFF803 0.70 +1.3 42,763 + GFF803 0.70 -0.1 42,763 + GFF803 0.70 -0.1 42,763 + GFF803 0.70 -0.3 42,764 - GFF803 0.70 +0.1 42,764 - GFF803 0.70 -0.1 42,765 + GFF803 0.70 -1.3 42,765 + GFF803 0.70 -1.5 42,765 + GFF803 0.70 -0.1 42,766 - GFF803 0.70 -2.2 42,766 - GFF803 0.70 +0.3 42,766 - GFF803 0.70 -0.7 42,766 - GFF803 0.70 -0.4 42,766 - GFF803 0.70 -0.4 42,766 - GFF803 0.70 +0.6 42,766 - GFF803 0.70 +0.9 42,816 - GFF803 0.76 -1.4 42,846 - GFF803 0.79 -0.8 42,897 + GFF803 0.85 -0.3 42,897 + GFF803 0.85 +0.1 42,950 - -1.1 42,981 - -0.5
Or see this region's nucleotide sequence