Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_04734

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_04732 and GEMAOFIL_04733 are separated by 5 nucleotidesGEMAOFIL_04733 and GEMAOFIL_04734 are separated by 251 nucleotidesGEMAOFIL_04734 and GEMAOFIL_04735 are separated by 231 nucleotides GEMAOFIL_04732: GEMAOFIL_04732 - Ribosome maturation factor RimM, at 5,214,644 to 5,215,180 _04732 GEMAOFIL_04733: GEMAOFIL_04733 - 30S ribosomal protein S16, at 5,215,186 to 5,215,437 _04733 GEMAOFIL_04734: GEMAOFIL_04734 - Signal recognition particle protein, at 5,215,689 to 5,217,065 _04734 GEMAOFIL_04735: GEMAOFIL_04735 - Inner membrane protein YpjD, at 5,217,297 to 5,218,109 _04735 Position (kb) 5215 5216 5217 5218Strain fitness (log2 ratio) -2 -1 0 1at 5215.583 kb on - strandat 5215.596 kb on - strandat 5215.690 kb on + strandat 5215.691 kb on - strandat 5215.691 kb on - strandat 5215.752 kb on - strandat 5217.113 kb on + strandat 5217.113 kb on + strandat 5217.114 kb on - strandat 5217.296 kb on + strandat 5217.296 kb on + strandat 5217.297 kb on - strandat 5217.346 kb on + strandat 5217.346 kb on + strandat 5217.346 kb on + strandat 5217.346 kb on + strandat 5217.346 kb on + strandat 5217.346 kb on + strandat 5217.347 kb on - strandat 5217.348 kb on + strandat 5217.348 kb on + strandat 5217.712 kb on - strand, within GEMAOFIL_04735at 5217.976 kb on + strand, within GEMAOFIL_04735at 5217.976 kb on + strand, within GEMAOFIL_04735at 5217.977 kb on - strand, within GEMAOFIL_04735at 5217.977 kb on - strand, within GEMAOFIL_04735

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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5,215,583 - -0.2
5,215,596 - -1.8
5,215,690 + -0.2
5,215,691 - +0.7
5,215,691 - -1.3
5,215,752 - -0.3
5,217,113 + -0.9
5,217,113 + -0.6
5,217,114 - -0.2
5,217,296 + -1.1
5,217,296 + +0.5
5,217,297 - +0.5
5,217,346 + -0.2
5,217,346 + -0.3
5,217,346 + -0.3
5,217,346 + -0.6
5,217,346 + -0.3
5,217,346 + -2.6
5,217,347 - +0.4
5,217,348 + +1.4
5,217,348 + -0.1
5,217,712 - GEMAOFIL_04735 0.51 +0.6
5,217,976 + GEMAOFIL_04735 0.84 +0.3
5,217,976 + GEMAOFIL_04735 0.84 +1.7
5,217,977 - GEMAOFIL_04735 0.84 +0.4
5,217,977 - GEMAOFIL_04735 0.84 +0.3

Or see this region's nucleotide sequence