Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_04690

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_04689 and GEMAOFIL_04690 overlap by 11 nucleotidesGEMAOFIL_04690 and GEMAOFIL_04691 are separated by 34 nucleotidesGEMAOFIL_04691 and GEMAOFIL_04692 overlap by 4 nucleotides GEMAOFIL_04689: GEMAOFIL_04689 - Adaptive-response sensory-kinase SasA, at 5,168,026 to 5,169,495 _04689 GEMAOFIL_04690: GEMAOFIL_04690 - Transcriptional regulatory protein OmpR, at 5,169,485 to 5,170,219 _04690 GEMAOFIL_04691: GEMAOFIL_04691 - Glucokinase, at 5,170,254 to 5,171,210 _04691 GEMAOFIL_04692: GEMAOFIL_04692 - Phosphogluconate dehydratase, at 5,171,207 to 5,173,033 _04692 Position (kb) 5169 5170 5171Strain fitness (log2 ratio) -3 -2 -1 0 1at 5168.485 kb on + strand, within GEMAOFIL_04689at 5168.486 kb on - strand, within GEMAOFIL_04689at 5168.830 kb on + strand, within GEMAOFIL_04689at 5168.900 kb on + strand, within GEMAOFIL_04689at 5168.927 kb on + strand, within GEMAOFIL_04689at 5169.002 kb on + strand, within GEMAOFIL_04689at 5169.121 kb on + strand, within GEMAOFIL_04689at 5169.121 kb on + strand, within GEMAOFIL_04689at 5169.122 kb on - strand, within GEMAOFIL_04689at 5169.285 kb on - strand, within GEMAOFIL_04689at 5169.285 kb on - strand, within GEMAOFIL_04689at 5169.359 kb on - strandat 5169.752 kb on + strand, within GEMAOFIL_04690at 5169.906 kb on + strand, within GEMAOFIL_04690at 5169.907 kb on - strand, within GEMAOFIL_04690at 5169.907 kb on - strand, within GEMAOFIL_04690at 5169.907 kb on - strand, within GEMAOFIL_04690at 5170.149 kb on + strandat 5170.212 kb on - strandat 5170.237 kb on + strandat 5170.435 kb on + strand, within GEMAOFIL_04691at 5170.435 kb on + strand, within GEMAOFIL_04691at 5170.435 kb on + strand, within GEMAOFIL_04691at 5170.435 kb on + strand, within GEMAOFIL_04691at 5170.436 kb on - strand, within GEMAOFIL_04691at 5170.436 kb on - strand, within GEMAOFIL_04691at 5170.436 kb on - strand, within GEMAOFIL_04691at 5170.436 kb on - strand, within GEMAOFIL_04691at 5170.436 kb on - strand, within GEMAOFIL_04691at 5170.436 kb on - strand, within GEMAOFIL_04691at 5170.438 kb on - strand, within GEMAOFIL_04691at 5170.438 kb on - strand, within GEMAOFIL_04691at 5170.464 kb on + strand, within GEMAOFIL_04691at 5170.465 kb on - strand, within GEMAOFIL_04691at 5170.469 kb on + strand, within GEMAOFIL_04691at 5170.469 kb on + strand, within GEMAOFIL_04691at 5170.470 kb on - strand, within GEMAOFIL_04691at 5170.470 kb on - strand, within GEMAOFIL_04691at 5170.676 kb on - strand, within GEMAOFIL_04691at 5170.676 kb on - strand, within GEMAOFIL_04691at 5170.676 kb on - strand, within GEMAOFIL_04691at 5171.077 kb on + strand, within GEMAOFIL_04691at 5171.077 kb on + strand, within GEMAOFIL_04691at 5171.107 kb on + strand, within GEMAOFIL_04691at 5171.107 kb on + strand, within GEMAOFIL_04691at 5171.108 kb on - strand, within GEMAOFIL_04691

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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5,168,485 + GEMAOFIL_04689 0.31 -0.4
5,168,486 - GEMAOFIL_04689 0.31 -0.6
5,168,830 + GEMAOFIL_04689 0.55 +0.4
5,168,900 + GEMAOFIL_04689 0.59 -0.2
5,168,927 + GEMAOFIL_04689 0.61 -0.8
5,169,002 + GEMAOFIL_04689 0.66 -0.7
5,169,121 + GEMAOFIL_04689 0.74 +0.5
5,169,121 + GEMAOFIL_04689 0.74 -0.2
5,169,122 - GEMAOFIL_04689 0.75 -0.5
5,169,285 - GEMAOFIL_04689 0.86 -0.2
5,169,285 - GEMAOFIL_04689 0.86 +0.5
5,169,359 - +0.5
5,169,752 + GEMAOFIL_04690 0.36 -0.4
5,169,906 + GEMAOFIL_04690 0.57 +0.4
5,169,907 - GEMAOFIL_04690 0.57 -0.6
5,169,907 - GEMAOFIL_04690 0.57 -2.0
5,169,907 - GEMAOFIL_04690 0.57 -0.4
5,170,149 + -0.7
5,170,212 - -1.0
5,170,237 + -0.5
5,170,435 + GEMAOFIL_04691 0.19 -0.6
5,170,435 + GEMAOFIL_04691 0.19 +0.0
5,170,435 + GEMAOFIL_04691 0.19 -0.8
5,170,435 + GEMAOFIL_04691 0.19 -1.4
5,170,436 - GEMAOFIL_04691 0.19 -0.7
5,170,436 - GEMAOFIL_04691 0.19 -0.5
5,170,436 - GEMAOFIL_04691 0.19 -1.3
5,170,436 - GEMAOFIL_04691 0.19 -1.8
5,170,436 - GEMAOFIL_04691 0.19 -1.7
5,170,436 - GEMAOFIL_04691 0.19 -1.8
5,170,438 - GEMAOFIL_04691 0.19 -3.3
5,170,438 - GEMAOFIL_04691 0.19 -1.6
5,170,464 + GEMAOFIL_04691 0.22 -0.6
5,170,465 - GEMAOFIL_04691 0.22 -1.3
5,170,469 + GEMAOFIL_04691 0.22 -0.3
5,170,469 + GEMAOFIL_04691 0.22 +0.2
5,170,470 - GEMAOFIL_04691 0.23 -1.5
5,170,470 - GEMAOFIL_04691 0.23 -1.5
5,170,676 - GEMAOFIL_04691 0.44 -1.3
5,170,676 - GEMAOFIL_04691 0.44 -1.6
5,170,676 - GEMAOFIL_04691 0.44 -1.1
5,171,077 + GEMAOFIL_04691 0.86 -0.6
5,171,077 + GEMAOFIL_04691 0.86 -1.8
5,171,107 + GEMAOFIL_04691 0.89 -0.5
5,171,107 + GEMAOFIL_04691 0.89 -0.0
5,171,108 - GEMAOFIL_04691 0.89 -1.7

Or see this region's nucleotide sequence