Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_02796

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_02794 and GEMAOFIL_02795 are separated by 160 nucleotidesGEMAOFIL_02795 and GEMAOFIL_02796 are separated by 232 nucleotidesGEMAOFIL_02796 and GEMAOFIL_02797 overlap by 4 nucleotides GEMAOFIL_02794: GEMAOFIL_02794 - hypothetical protein, at 3,060,565 to 3,061,854 _02794 GEMAOFIL_02795: GEMAOFIL_02795 - Thiol peroxidase, at 3,062,015 to 3,062,515 _02795 GEMAOFIL_02796: GEMAOFIL_02796 - Multidrug resistance protein MdtA, at 3,062,748 to 3,064,046 _02796 GEMAOFIL_02797: GEMAOFIL_02797 - Multidrug resistance protein MdtB, at 3,064,043 to 3,067,144 _02797 Position (kb) 3062 3063 3064 3065Strain fitness (log2 ratio) -2 -1 0 1at 3061.776 kb on + strandat 3061.776 kb on + strandat 3061.776 kb on + strandat 3061.776 kb on + strandat 3061.777 kb on - strandat 3061.777 kb on - strandat 3061.818 kb on - strandat 3062.002 kb on - strandat 3062.002 kb on - strandat 3062.363 kb on + strand, within GEMAOFIL_02795at 3062.546 kb on + strandat 3062.559 kb on - strandat 3062.633 kb on + strandat 3062.657 kb on - strandat 3062.657 kb on - strandat 3062.668 kb on - strandat 3062.671 kb on + strandat 3062.672 kb on - strandat 3062.672 kb on - strandat 3062.894 kb on + strand, within GEMAOFIL_02796at 3062.988 kb on + strand, within GEMAOFIL_02796at 3062.988 kb on + strand, within GEMAOFIL_02796at 3062.988 kb on + strand, within GEMAOFIL_02796at 3062.989 kb on - strand, within GEMAOFIL_02796at 3062.989 kb on - strand, within GEMAOFIL_02796at 3062.989 kb on - strand, within GEMAOFIL_02796at 3063.882 kb on - strand, within GEMAOFIL_02796at 3064.428 kb on - strand, within GEMAOFIL_02797at 3064.428 kb on - strand, within GEMAOFIL_02797at 3064.428 kb on - strand, within GEMAOFIL_02797

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,061,776 + -0.5
3,061,776 + -0.2
3,061,776 + -0.2
3,061,776 + -0.6
3,061,777 - +1.1
3,061,777 - -0.4
3,061,818 - +0.4
3,062,002 - +0.9
3,062,002 - -0.2
3,062,363 + GEMAOFIL_02795 0.69 -0.3
3,062,546 + -1.1
3,062,559 - -0.4
3,062,633 + -0.3
3,062,657 - +0.7
3,062,657 - -0.0
3,062,668 - -2.5
3,062,671 + +0.1
3,062,672 - +0.4
3,062,672 - +1.1
3,062,894 + GEMAOFIL_02796 0.11 +0.4
3,062,988 + GEMAOFIL_02796 0.18 +0.5
3,062,988 + GEMAOFIL_02796 0.18 -1.1
3,062,988 + GEMAOFIL_02796 0.18 -0.1
3,062,989 - GEMAOFIL_02796 0.19 -0.2
3,062,989 - GEMAOFIL_02796 0.19 +0.2
3,062,989 - GEMAOFIL_02796 0.19 -2.4
3,063,882 - GEMAOFIL_02796 0.87 +0.2
3,064,428 - GEMAOFIL_02797 0.12 -0.4
3,064,428 - GEMAOFIL_02797 0.12 -0.5
3,064,428 - GEMAOFIL_02797 0.12 +0.3

Or see this region's nucleotide sequence