Strain Fitness in Pantoea agglomerans CFBP13505 P0401 around PagCFBP13505_RS02145

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPagCFBP13505_RS02135 and PagCFBP13505_RS02140 overlap by 4 nucleotidesPagCFBP13505_RS02140 and PagCFBP13505_RS02145 overlap by 1 nucleotidesPagCFBP13505_RS02145 and PagCFBP13505_RS02150 are separated by 454 nucleotides PagCFBP13505_RS02135: PagCFBP13505_RS02135 - two-component system sensor histidine kinase PmrB, at 491,024 to 492,082 _RS02135 PagCFBP13505_RS02140: PagCFBP13505_RS02140 - two-component system response regulator PmrA, at 492,079 to 492,759 _RS02140 PagCFBP13505_RS02145: PagCFBP13505_RS02145 - phosphoethanolamine transferase EptA, at 492,759 to 494,387 _RS02145 PagCFBP13505_RS02150: PagCFBP13505_RS02150 - trehalose-phosphatase, at 494,842 to 495,630 _RS02150 Position (kb) 492 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 491.797 kb on - strand, within PagCFBP13505_RS02135at 491.829 kb on + strand, within PagCFBP13505_RS02135at 491.851 kb on + strand, within PagCFBP13505_RS02135at 492.175 kb on - strand, within PagCFBP13505_RS02140at 492.180 kb on + strand, within PagCFBP13505_RS02140at 492.180 kb on + strand, within PagCFBP13505_RS02140at 492.180 kb on + strand, within PagCFBP13505_RS02140at 492.195 kb on + strand, within PagCFBP13505_RS02140at 492.198 kb on + strand, within PagCFBP13505_RS02140at 492.199 kb on - strand, within PagCFBP13505_RS02140at 492.199 kb on - strand, within PagCFBP13505_RS02140at 492.202 kb on - strand, within PagCFBP13505_RS02140at 492.202 kb on - strand, within PagCFBP13505_RS02140at 492.202 kb on - strand, within PagCFBP13505_RS02140at 492.222 kb on + strand, within PagCFBP13505_RS02140at 492.223 kb on - strand, within PagCFBP13505_RS02140at 492.224 kb on + strand, within PagCFBP13505_RS02140at 492.224 kb on + strand, within PagCFBP13505_RS02140at 492.224 kb on + strand, within PagCFBP13505_RS02140at 492.224 kb on + strand, within PagCFBP13505_RS02140at 492.224 kb on + strand, within PagCFBP13505_RS02140at 492.225 kb on - strand, within PagCFBP13505_RS02140at 492.225 kb on - strand, within PagCFBP13505_RS02140at 492.225 kb on - strand, within PagCFBP13505_RS02140at 492.225 kb on - strand, within PagCFBP13505_RS02140at 492.229 kb on - strand, within PagCFBP13505_RS02140at 492.229 kb on - strand, within PagCFBP13505_RS02140at 492.229 kb on - strand, within PagCFBP13505_RS02140at 492.337 kb on - strand, within PagCFBP13505_RS02140at 492.354 kb on + strand, within PagCFBP13505_RS02140at 492.354 kb on + strand, within PagCFBP13505_RS02140at 492.373 kb on + strand, within PagCFBP13505_RS02140at 492.374 kb on - strand, within PagCFBP13505_RS02140at 492.374 kb on - strand, within PagCFBP13505_RS02140at 492.468 kb on - strand, within PagCFBP13505_RS02140at 492.625 kb on - strand, within PagCFBP13505_RS02140at 492.625 kb on - strand, within PagCFBP13505_RS02140at 492.625 kb on - strand, within PagCFBP13505_RS02140at 492.626 kb on + strand, within PagCFBP13505_RS02140at 492.627 kb on - strand, within PagCFBP13505_RS02140at 492.627 kb on - strand, within PagCFBP13505_RS02140at 492.627 kb on - strand, within PagCFBP13505_RS02140at 492.686 kb on + strand, within PagCFBP13505_RS02140at 492.751 kb on + strandat 492.805 kb on + strandat 492.806 kb on - strandat 492.806 kb on - strandat 492.806 kb on - strandat 492.806 kb on - strandat 492.855 kb on - strandat 492.887 kb on + strandat 492.925 kb on + strand, within PagCFBP13505_RS02145at 492.926 kb on - strand, within PagCFBP13505_RS02145at 492.980 kb on + strand, within PagCFBP13505_RS02145at 492.981 kb on - strand, within PagCFBP13505_RS02145at 492.986 kb on - strand, within PagCFBP13505_RS02145at 493.003 kb on + strand, within PagCFBP13505_RS02145at 493.003 kb on + strand, within PagCFBP13505_RS02145at 493.003 kb on + strand, within PagCFBP13505_RS02145at 493.004 kb on - strand, within PagCFBP13505_RS02145at 493.045 kb on + strand, within PagCFBP13505_RS02145at 493.046 kb on - strand, within PagCFBP13505_RS02145at 493.086 kb on + strand, within PagCFBP13505_RS02145at 493.086 kb on + strand, within PagCFBP13505_RS02145at 493.101 kb on - strand, within PagCFBP13505_RS02145at 493.101 kb on - strand, within PagCFBP13505_RS02145at 493.138 kb on + strand, within PagCFBP13505_RS02145at 493.138 kb on + strand, within PagCFBP13505_RS02145at 493.139 kb on - strand, within PagCFBP13505_RS02145at 493.139 kb on - strand, within PagCFBP13505_RS02145at 493.300 kb on + strand, within PagCFBP13505_RS02145at 493.300 kb on + strand, within PagCFBP13505_RS02145at 493.301 kb on - strand, within PagCFBP13505_RS02145at 493.301 kb on - strand, within PagCFBP13505_RS02145at 493.301 kb on - strand, within PagCFBP13505_RS02145at 493.334 kb on - strand, within PagCFBP13505_RS02145at 493.349 kb on + strand, within PagCFBP13505_RS02145at 493.349 kb on + strand, within PagCFBP13505_RS02145at 493.349 kb on + strand, within PagCFBP13505_RS02145at 493.350 kb on - strand, within PagCFBP13505_RS02145at 493.463 kb on + strand, within PagCFBP13505_RS02145at 493.463 kb on + strand, within PagCFBP13505_RS02145at 493.463 kb on + strand, within PagCFBP13505_RS02145at 493.463 kb on + strand, within PagCFBP13505_RS02145at 493.467 kb on - strand, within PagCFBP13505_RS02145at 493.467 kb on - strand, within PagCFBP13505_RS02145at 493.508 kb on - strand, within PagCFBP13505_RS02145at 493.588 kb on + strand, within PagCFBP13505_RS02145at 493.598 kb on + strand, within PagCFBP13505_RS02145at 493.599 kb on - strand, within PagCFBP13505_RS02145at 493.634 kb on - strand, within PagCFBP13505_RS02145at 493.764 kb on + strand, within PagCFBP13505_RS02145at 493.778 kb on + strand, within PagCFBP13505_RS02145at 493.778 kb on + strand, within PagCFBP13505_RS02145at 493.778 kb on + strand, within PagCFBP13505_RS02145at 493.779 kb on - strand, within PagCFBP13505_RS02145at 493.780 kb on + strand, within PagCFBP13505_RS02145at 493.780 kb on + strand, within PagCFBP13505_RS02145at 493.781 kb on - strand, within PagCFBP13505_RS02145at 493.781 kb on - strand, within PagCFBP13505_RS02145at 493.781 kb on - strand, within PagCFBP13505_RS02145at 493.808 kb on + strand, within PagCFBP13505_RS02145at 493.862 kb on - strand, within PagCFBP13505_RS02145at 493.871 kb on - strand, within PagCFBP13505_RS02145at 493.914 kb on + strand, within PagCFBP13505_RS02145at 493.915 kb on - strand, within PagCFBP13505_RS02145at 493.915 kb on - strand, within PagCFBP13505_RS02145at 494.102 kb on + strand, within PagCFBP13505_RS02145at 494.103 kb on - strand, within PagCFBP13505_RS02145at 494.103 kb on - strand, within PagCFBP13505_RS02145at 494.104 kb on + strand, within PagCFBP13505_RS02145at 494.105 kb on - strand, within PagCFBP13505_RS02145at 494.105 kb on - strand, within PagCFBP13505_RS02145at 494.105 kb on - strand, within PagCFBP13505_RS02145at 494.145 kb on - strand, within PagCFBP13505_RS02145at 494.178 kb on - strand, within PagCFBP13505_RS02145at 494.201 kb on + strand, within PagCFBP13505_RS02145at 494.201 kb on + strand, within PagCFBP13505_RS02145at 494.235 kb on + strandat 494.293 kb on + strandat 494.307 kb on - strandat 494.324 kb on - strandat 494.349 kb on - strandat 494.437 kb on - strandat 494.437 kb on - strandat 494.445 kb on + strandat 494.445 kb on + strandat 494.446 kb on - strandat 494.494 kb on + strandat 494.494 kb on + strandat 494.645 kb on - strandat 494.645 kb on - strandat 494.666 kb on - strandat 494.672 kb on + strandat 494.672 kb on + strandat 494.673 kb on - strandat 494.712 kb on + strandat 494.713 kb on - strandat 494.838 kb on + strandat 495.044 kb on + strand, within PagCFBP13505_RS02150at 495.044 kb on + strand, within PagCFBP13505_RS02150at 495.127 kb on - strand, within PagCFBP13505_RS02150at 495.250 kb on + strand, within PagCFBP13505_RS02150

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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491,797 - PagCFBP13505_RS02135 0.73 -0.0
491,829 + PagCFBP13505_RS02135 0.76 -0.4
491,851 + PagCFBP13505_RS02135 0.78 +0.9
492,175 - PagCFBP13505_RS02140 0.14 +1.0
492,180 + PagCFBP13505_RS02140 0.15 -0.1
492,180 + PagCFBP13505_RS02140 0.15 -1.7
492,180 + PagCFBP13505_RS02140 0.15 +0.0
492,195 + PagCFBP13505_RS02140 0.17 +1.5
492,198 + PagCFBP13505_RS02140 0.17 +0.3
492,199 - PagCFBP13505_RS02140 0.18 +0.0
492,199 - PagCFBP13505_RS02140 0.18 +0.3
492,202 - PagCFBP13505_RS02140 0.18 -0.6
492,202 - PagCFBP13505_RS02140 0.18 +0.0
492,202 - PagCFBP13505_RS02140 0.18 -0.5
492,222 + PagCFBP13505_RS02140 0.21 +0.2
492,223 - PagCFBP13505_RS02140 0.21 +0.0
492,224 + PagCFBP13505_RS02140 0.21 +1.0
492,224 + PagCFBP13505_RS02140 0.21 +0.5
492,224 + PagCFBP13505_RS02140 0.21 +0.5
492,224 + PagCFBP13505_RS02140 0.21 -0.8
492,224 + PagCFBP13505_RS02140 0.21 +0.1
492,225 - PagCFBP13505_RS02140 0.21 +0.1
492,225 - PagCFBP13505_RS02140 0.21 -0.8
492,225 - PagCFBP13505_RS02140 0.21 -0.4
492,225 - PagCFBP13505_RS02140 0.21 -0.3
492,229 - PagCFBP13505_RS02140 0.22 -1.5
492,229 - PagCFBP13505_RS02140 0.22 -1.0
492,229 - PagCFBP13505_RS02140 0.22 -1.2
492,337 - PagCFBP13505_RS02140 0.38 +0.1
492,354 + PagCFBP13505_RS02140 0.40 -0.3
492,354 + PagCFBP13505_RS02140 0.40 +0.2
492,373 + PagCFBP13505_RS02140 0.43 -0.9
492,374 - PagCFBP13505_RS02140 0.43 +0.4
492,374 - PagCFBP13505_RS02140 0.43 +0.2
492,468 - PagCFBP13505_RS02140 0.57 -0.8
492,625 - PagCFBP13505_RS02140 0.80 +0.5
492,625 - PagCFBP13505_RS02140 0.80 +1.1
492,625 - PagCFBP13505_RS02140 0.80 +0.1
492,626 + PagCFBP13505_RS02140 0.80 +0.1
492,627 - PagCFBP13505_RS02140 0.80 -0.7
492,627 - PagCFBP13505_RS02140 0.80 -0.8
492,627 - PagCFBP13505_RS02140 0.80 -0.3
492,686 + PagCFBP13505_RS02140 0.89 +0.1
492,751 + -3.6
492,805 + +0.4
492,806 - -1.0
492,806 - -1.6
492,806 - +0.4
492,806 - -0.1
492,855 - -0.8
492,887 + +0.2
492,925 + PagCFBP13505_RS02145 0.10 +0.4
492,926 - PagCFBP13505_RS02145 0.10 -0.7
492,980 + PagCFBP13505_RS02145 0.14 -1.6
492,981 - PagCFBP13505_RS02145 0.14 -0.9
492,986 - PagCFBP13505_RS02145 0.14 -0.3
493,003 + PagCFBP13505_RS02145 0.15 -2.5
493,003 + PagCFBP13505_RS02145 0.15 -0.2
493,003 + PagCFBP13505_RS02145 0.15 -0.2
493,004 - PagCFBP13505_RS02145 0.15 -0.7
493,045 + PagCFBP13505_RS02145 0.18 +1.2
493,046 - PagCFBP13505_RS02145 0.18 +0.4
493,086 + PagCFBP13505_RS02145 0.20 -0.5
493,086 + PagCFBP13505_RS02145 0.20 +0.8
493,101 - PagCFBP13505_RS02145 0.21 -1.1
493,101 - PagCFBP13505_RS02145 0.21 -1.1
493,138 + PagCFBP13505_RS02145 0.23 -0.3
493,138 + PagCFBP13505_RS02145 0.23 +0.1
493,139 - PagCFBP13505_RS02145 0.23 -2.1
493,139 - PagCFBP13505_RS02145 0.23 +1.7
493,300 + PagCFBP13505_RS02145 0.33 +0.3
493,300 + PagCFBP13505_RS02145 0.33 -0.1
493,301 - PagCFBP13505_RS02145 0.33 +0.3
493,301 - PagCFBP13505_RS02145 0.33 -0.8
493,301 - PagCFBP13505_RS02145 0.33 -1.1
493,334 - PagCFBP13505_RS02145 0.35 -0.8
493,349 + PagCFBP13505_RS02145 0.36 +0.1
493,349 + PagCFBP13505_RS02145 0.36 -0.1
493,349 + PagCFBP13505_RS02145 0.36 +1.1
493,350 - PagCFBP13505_RS02145 0.36 -1.0
493,463 + PagCFBP13505_RS02145 0.43 -0.0
493,463 + PagCFBP13505_RS02145 0.43 -0.2
493,463 + PagCFBP13505_RS02145 0.43 -0.1
493,463 + PagCFBP13505_RS02145 0.43 -3.1
493,467 - PagCFBP13505_RS02145 0.43 +0.2
493,467 - PagCFBP13505_RS02145 0.43 +1.0
493,508 - PagCFBP13505_RS02145 0.46 +0.1
493,588 + PagCFBP13505_RS02145 0.51 +0.3
493,598 + PagCFBP13505_RS02145 0.52 -0.4
493,599 - PagCFBP13505_RS02145 0.52 -0.5
493,634 - PagCFBP13505_RS02145 0.54 +0.3
493,764 + PagCFBP13505_RS02145 0.62 -0.1
493,778 + PagCFBP13505_RS02145 0.63 +0.2
493,778 + PagCFBP13505_RS02145 0.63 -2.4
493,778 + PagCFBP13505_RS02145 0.63 -0.2
493,779 - PagCFBP13505_RS02145 0.63 +0.5
493,780 + PagCFBP13505_RS02145 0.63 -0.1
493,780 + PagCFBP13505_RS02145 0.63 -0.1
493,781 - PagCFBP13505_RS02145 0.63 -0.2
493,781 - PagCFBP13505_RS02145 0.63 +0.5
493,781 - PagCFBP13505_RS02145 0.63 -0.1
493,808 + PagCFBP13505_RS02145 0.64 +0.1
493,862 - PagCFBP13505_RS02145 0.68 +0.1
493,871 - PagCFBP13505_RS02145 0.68 -0.1
493,914 + PagCFBP13505_RS02145 0.71 -0.2
493,915 - PagCFBP13505_RS02145 0.71 +0.1
493,915 - PagCFBP13505_RS02145 0.71 -1.2
494,102 + PagCFBP13505_RS02145 0.82 -0.3
494,103 - PagCFBP13505_RS02145 0.83 -0.5
494,103 - PagCFBP13505_RS02145 0.83 +0.4
494,104 + PagCFBP13505_RS02145 0.83 -0.6
494,105 - PagCFBP13505_RS02145 0.83 +1.9
494,105 - PagCFBP13505_RS02145 0.83 -0.2
494,105 - PagCFBP13505_RS02145 0.83 +0.5
494,145 - PagCFBP13505_RS02145 0.85 -0.5
494,178 - PagCFBP13505_RS02145 0.87 +0.9
494,201 + PagCFBP13505_RS02145 0.89 +0.1
494,201 + PagCFBP13505_RS02145 0.89 -1.8
494,235 + +0.3
494,293 + -0.2
494,307 - -0.3
494,324 - -0.1
494,349 - -1.5
494,437 - -0.2
494,437 - +0.7
494,445 + -0.2
494,445 + -1.6
494,446 - -0.9
494,494 + +0.6
494,494 + -0.9
494,645 - -0.0
494,645 - -0.1
494,666 - +1.5
494,672 + -0.4
494,672 + +0.2
494,673 - +0.5
494,712 + -0.6
494,713 - +0.4
494,838 + +0.2
495,044 + PagCFBP13505_RS02150 0.26 -0.6
495,044 + PagCFBP13505_RS02150 0.26 -1.7
495,127 - PagCFBP13505_RS02150 0.36 -1.2
495,250 + PagCFBP13505_RS02150 0.52 -1.6

Or see this region's nucleotide sequence