Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS03185 and PagCFBP13505_RS03190 are separated by 291 nucleotides PagCFBP13505_RS03190 and PagCFBP13505_RS03195 are separated by 190 nucleotides PagCFBP13505_RS03195 and PagCFBP13505_RS03200 are separated by 371 nucleotides
PagCFBP13505_RS03185: PagCFBP13505_RS03185 - iron-containing alcohol dehydrogenase, at 32,590 to 33,738
_RS03185
PagCFBP13505_RS03190: PagCFBP13505_RS03190 - gluconate transporter, at 34,030 to 35,346
_RS03190
PagCFBP13505_RS03195: PagCFBP13505_RS03195 - hypothetical protein, at 35,537 to 35,782
_RS03195
PagCFBP13505_RS03200: PagCFBP13505_RS03200 - hypothetical protein, at 36,154 to 36,360
_RS03200
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 33.128 kb on + strand, within PagCFBP13505_RS03185 at 33.129 kb on - strand, within PagCFBP13505_RS03185 at 33.129 kb on - strand, within PagCFBP13505_RS03185 at 33.129 kb on - strand, within PagCFBP13505_RS03185 at 33.148 kb on - strand, within PagCFBP13505_RS03185 at 33.260 kb on - strand, within PagCFBP13505_RS03185 at 33.415 kb on + strand, within PagCFBP13505_RS03185 at 33.416 kb on - strand, within PagCFBP13505_RS03185 at 33.448 kb on + strand, within PagCFBP13505_RS03185 at 33.448 kb on + strand, within PagCFBP13505_RS03185 at 33.558 kb on + strand, within PagCFBP13505_RS03185 at 33.558 kb on + strand, within PagCFBP13505_RS03185 at 33.559 kb on - strand, within PagCFBP13505_RS03185 at 33.559 kb on - strand, within PagCFBP13505_RS03185 at 33.562 kb on - strand, within PagCFBP13505_RS03185 at 33.562 kb on - strand, within PagCFBP13505_RS03185 at 33.562 kb on - strand, within PagCFBP13505_RS03185 at 33.562 kb on - strand, within PagCFBP13505_RS03185 at 33.562 kb on - strand, within PagCFBP13505_RS03185 at 33.593 kb on + strand, within PagCFBP13505_RS03185 at 33.593 kb on + strand, within PagCFBP13505_RS03185 at 33.593 kb on + strand, within PagCFBP13505_RS03185 at 33.637 kb on - strand at 33.637 kb on - strand at 33.708 kb on + strand at 33.713 kb on + strand at 33.713 kb on + strand at 33.714 kb on - strand at 33.935 kb on + strand at 33.935 kb on + strand at 33.935 kb on + strand at 33.935 kb on + strand at 33.936 kb on - strand at 33.936 kb on - strand at 33.936 kb on - strand at 33.936 kb on - strand at 33.944 kb on + strand at 33.982 kb on - strand at 34.029 kb on + strand at 34.029 kb on + strand at 34.029 kb on + strand at 34.042 kb on + strand at 34.043 kb on - strand at 34.043 kb on - strand at 34.104 kb on + strand at 34.161 kb on + strand at 34.162 kb on - strand, within PagCFBP13505_RS03190 at 34.162 kb on - strand, within PagCFBP13505_RS03190 at 34.171 kb on - strand, within PagCFBP13505_RS03190 at 34.278 kb on + strand, within PagCFBP13505_RS03190 at 34.278 kb on + strand, within PagCFBP13505_RS03190 at 34.311 kb on + strand, within PagCFBP13505_RS03190 at 34.311 kb on + strand, within PagCFBP13505_RS03190 at 34.311 kb on + strand, within PagCFBP13505_RS03190 at 34.317 kb on + strand, within PagCFBP13505_RS03190 at 34.385 kb on + strand, within PagCFBP13505_RS03190 at 34.385 kb on + strand, within PagCFBP13505_RS03190 at 34.386 kb on - strand, within PagCFBP13505_RS03190 at 34.386 kb on - strand, within PagCFBP13505_RS03190 at 34.400 kb on + strand, within PagCFBP13505_RS03190 at 34.400 kb on + strand, within PagCFBP13505_RS03190 at 34.401 kb on - strand, within PagCFBP13505_RS03190 at 34.441 kb on + strand, within PagCFBP13505_RS03190 at 34.442 kb on - strand, within PagCFBP13505_RS03190 at 34.546 kb on - strand, within PagCFBP13505_RS03190 at 34.546 kb on - strand, within PagCFBP13505_RS03190 at 34.556 kb on + strand, within PagCFBP13505_RS03190 at 34.556 kb on + strand, within PagCFBP13505_RS03190 at 34.556 kb on + strand, within PagCFBP13505_RS03190 at 34.557 kb on - strand, within PagCFBP13505_RS03190 at 34.654 kb on + strand, within PagCFBP13505_RS03190 at 34.655 kb on - strand, within PagCFBP13505_RS03190 at 34.657 kb on - strand, within PagCFBP13505_RS03190 at 34.721 kb on + strand, within PagCFBP13505_RS03190 at 34.721 kb on + strand, within PagCFBP13505_RS03190 at 34.722 kb on - strand, within PagCFBP13505_RS03190 at 34.899 kb on + strand, within PagCFBP13505_RS03190 at 34.995 kb on + strand, within PagCFBP13505_RS03190 at 34.996 kb on - strand, within PagCFBP13505_RS03190 at 34.999 kb on + strand, within PagCFBP13505_RS03190 at 35.000 kb on - strand, within PagCFBP13505_RS03190 at 35.000 kb on - strand, within PagCFBP13505_RS03190 at 35.000 kb on - strand, within PagCFBP13505_RS03190 at 35.000 kb on - strand, within PagCFBP13505_RS03190 at 35.022 kb on + strand, within PagCFBP13505_RS03190 at 35.044 kb on - strand, within PagCFBP13505_RS03190 at 35.073 kb on + strand, within PagCFBP13505_RS03190 at 35.096 kb on + strand, within PagCFBP13505_RS03190 at 35.240 kb on - strand at 35.295 kb on + strand at 35.453 kb on + strand at 35.623 kb on + strand, within PagCFBP13505_RS03195 at 35.623 kb on + strand, within PagCFBP13505_RS03195 at 35.623 kb on + strand, within PagCFBP13505_RS03195 at 35.649 kb on + strand, within PagCFBP13505_RS03195 at 35.650 kb on - strand, within PagCFBP13505_RS03195 at 35.650 kb on - strand, within PagCFBP13505_RS03195 at 35.650 kb on - strand, within PagCFBP13505_RS03195 at 35.767 kb on + strand at 35.768 kb on - strand at 35.768 kb on - strand at 35.770 kb on + strand at 35.770 kb on + strand at 35.770 kb on + strand at 35.771 kb on - strand at 35.783 kb on - strand at 35.783 kb on - strand at 35.783 kb on - strand at 35.886 kb on + strand at 35.909 kb on - strand at 35.924 kb on + strand at 35.963 kb on + strand at 35.996 kb on + strand at 36.018 kb on + strand at 36.123 kb on + strand at 36.124 kb on - strand at 36.124 kb on - strand at 36.156 kb on - strand at 36.156 kb on - strand at 36.219 kb on + strand, within PagCFBP13505_RS03200 at 36.220 kb on - strand, within PagCFBP13505_RS03200 at 36.256 kb on - strand, within PagCFBP13505_RS03200 at 36.256 kb on - strand, within PagCFBP13505_RS03200 at 36.260 kb on + strand, within PagCFBP13505_RS03200 at 36.261 kb on - strand, within PagCFBP13505_RS03200
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 33,128 + PagCFBP13505_RS03185 0.47 +0.3 33,129 - PagCFBP13505_RS03185 0.47 +1.0 33,129 - PagCFBP13505_RS03185 0.47 +0.0 33,129 - PagCFBP13505_RS03185 0.47 -0.8 33,148 - PagCFBP13505_RS03185 0.49 +0.4 33,260 - PagCFBP13505_RS03185 0.58 +0.4 33,415 + PagCFBP13505_RS03185 0.72 +0.8 33,416 - PagCFBP13505_RS03185 0.72 -1.5 33,448 + PagCFBP13505_RS03185 0.75 +0.4 33,448 + PagCFBP13505_RS03185 0.75 +0.2 33,558 + PagCFBP13505_RS03185 0.84 -0.1 33,558 + PagCFBP13505_RS03185 0.84 +0.3 33,559 - PagCFBP13505_RS03185 0.84 -1.4 33,559 - PagCFBP13505_RS03185 0.84 -0.0 33,562 - PagCFBP13505_RS03185 0.85 -0.1 33,562 - PagCFBP13505_RS03185 0.85 +0.2 33,562 - PagCFBP13505_RS03185 0.85 +0.3 33,562 - PagCFBP13505_RS03185 0.85 +0.1 33,562 - PagCFBP13505_RS03185 0.85 +0.0 33,593 + PagCFBP13505_RS03185 0.87 +0.8 33,593 + PagCFBP13505_RS03185 0.87 +0.9 33,593 + PagCFBP13505_RS03185 0.87 -0.2 33,637 - +0.0 33,637 - +0.2 33,708 + -0.1 33,713 + -0.3 33,713 + -0.7 33,714 - -2.0 33,935 + -0.0 33,935 + +0.3 33,935 + +0.8 33,935 + -0.3 33,936 - +0.3 33,936 - -0.1 33,936 - -0.3 33,936 - -1.1 33,944 + +0.3 33,982 - +0.4 34,029 + -2.1 34,029 + +0.4 34,029 + +0.7 34,042 + -0.2 34,043 - -0.2 34,043 - -0.0 34,104 + -0.2 34,161 + -0.2 34,162 - PagCFBP13505_RS03190 0.10 -0.6 34,162 - PagCFBP13505_RS03190 0.10 -2.3 34,171 - PagCFBP13505_RS03190 0.11 +1.0 34,278 + PagCFBP13505_RS03190 0.19 +0.4 34,278 + PagCFBP13505_RS03190 0.19 +0.3 34,311 + PagCFBP13505_RS03190 0.21 +0.2 34,311 + PagCFBP13505_RS03190 0.21 -0.1 34,311 + PagCFBP13505_RS03190 0.21 +0.2 34,317 + PagCFBP13505_RS03190 0.22 -1.0 34,385 + PagCFBP13505_RS03190 0.27 +1.4 34,385 + PagCFBP13505_RS03190 0.27 -0.6 34,386 - PagCFBP13505_RS03190 0.27 -0.4 34,386 - PagCFBP13505_RS03190 0.27 +1.0 34,400 + PagCFBP13505_RS03190 0.28 +0.8 34,400 + PagCFBP13505_RS03190 0.28 +0.1 34,401 - PagCFBP13505_RS03190 0.28 -1.1 34,441 + PagCFBP13505_RS03190 0.31 +0.8 34,442 - PagCFBP13505_RS03190 0.31 +0.4 34,546 - PagCFBP13505_RS03190 0.39 +0.5 34,546 - PagCFBP13505_RS03190 0.39 -2.0 34,556 + PagCFBP13505_RS03190 0.40 +0.3 34,556 + PagCFBP13505_RS03190 0.40 -0.3 34,556 + PagCFBP13505_RS03190 0.40 +0.0 34,557 - PagCFBP13505_RS03190 0.40 +0.3 34,654 + PagCFBP13505_RS03190 0.47 +0.2 34,655 - PagCFBP13505_RS03190 0.47 -2.3 34,657 - PagCFBP13505_RS03190 0.48 -1.0 34,721 + PagCFBP13505_RS03190 0.52 +0.0 34,721 + PagCFBP13505_RS03190 0.52 +0.0 34,722 - PagCFBP13505_RS03190 0.53 +1.5 34,899 + PagCFBP13505_RS03190 0.66 -0.1 34,995 + PagCFBP13505_RS03190 0.73 -0.4 34,996 - PagCFBP13505_RS03190 0.73 -0.5 34,999 + PagCFBP13505_RS03190 0.74 -0.6 35,000 - PagCFBP13505_RS03190 0.74 -0.3 35,000 - PagCFBP13505_RS03190 0.74 +0.6 35,000 - PagCFBP13505_RS03190 0.74 -0.4 35,000 - PagCFBP13505_RS03190 0.74 -0.8 35,022 + PagCFBP13505_RS03190 0.75 +0.3 35,044 - PagCFBP13505_RS03190 0.77 -0.0 35,073 + PagCFBP13505_RS03190 0.79 +0.2 35,096 + PagCFBP13505_RS03190 0.81 -0.3 35,240 - +0.4 35,295 + -0.3 35,453 + -0.4 35,623 + PagCFBP13505_RS03195 0.35 +0.0 35,623 + PagCFBP13505_RS03195 0.35 -0.1 35,623 + PagCFBP13505_RS03195 0.35 +0.1 35,649 + PagCFBP13505_RS03195 0.46 +0.5 35,650 - PagCFBP13505_RS03195 0.46 +0.8 35,650 - PagCFBP13505_RS03195 0.46 -0.4 35,650 - PagCFBP13505_RS03195 0.46 +0.5 35,767 + -0.4 35,768 - +0.6 35,768 - -0.1 35,770 + +0.0 35,770 + +0.3 35,770 + -0.5 35,771 - -2.0 35,783 - -0.8 35,783 - +0.0 35,783 - +0.4 35,886 + -0.9 35,909 - +0.2 35,924 + -0.4 35,963 + +0.5 35,996 + +0.7 36,018 + +0.8 36,123 + -0.0 36,124 - -3.3 36,124 - -1.0 36,156 - +0.4 36,156 - -0.5 36,219 + PagCFBP13505_RS03200 0.31 +0.0 36,220 - PagCFBP13505_RS03200 0.32 +1.0 36,256 - PagCFBP13505_RS03200 0.49 -0.8 36,256 - PagCFBP13505_RS03200 0.49 -0.4 36,260 + PagCFBP13505_RS03200 0.51 +1.5 36,261 - PagCFBP13505_RS03200 0.52 +0.3
Or see this region's nucleotide sequence