Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS12240 and PagCFBP13505_RS12245 are separated by 1 nucleotides PagCFBP13505_RS12245 and PagCFBP13505_RS12250 overlap by 4 nucleotides PagCFBP13505_RS12250 and PagCFBP13505_RS12255 overlap by 1 nucleotides PagCFBP13505_RS12255 and PagCFBP13505_RS12260 overlap by 1 nucleotides
PagCFBP13505_RS12240: PagCFBP13505_RS12240 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 55,059 to 56,195
_RS12240
PagCFBP13505_RS12245: PagCFBP13505_RS12245 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 56,197 to 57,180
_RS12245
PagCFBP13505_RS12250: PagCFBP13505_RS12250 - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 57,177 to 59,156
_RS12250
PagCFBP13505_RS12255: PagCFBP13505_RS12255 - 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase, at 59,156 to 60,058
_RS12255
PagCFBP13505_RS12260: PagCFBP13505_RS12260 - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 60,058 to 61,725
_RS12260
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.221 kb on - strand at 56.221 kb on - strand at 56.245 kb on + strand at 56.245 kb on + strand at 56.245 kb on + strand at 56.246 kb on - strand at 56.248 kb on - strand at 56.428 kb on + strand, within PagCFBP13505_RS12245 at 56.428 kb on + strand, within PagCFBP13505_RS12245 at 56.429 kb on - strand, within PagCFBP13505_RS12245 at 56.429 kb on - strand, within PagCFBP13505_RS12245 at 56.484 kb on + strand, within PagCFBP13505_RS12245 at 56.557 kb on + strand, within PagCFBP13505_RS12245 at 56.557 kb on + strand, within PagCFBP13505_RS12245 at 56.557 kb on + strand, within PagCFBP13505_RS12245 at 56.558 kb on - strand, within PagCFBP13505_RS12245 at 56.558 kb on - strand, within PagCFBP13505_RS12245 at 56.610 kb on + strand, within PagCFBP13505_RS12245 at 56.693 kb on - strand, within PagCFBP13505_RS12245 at 56.745 kb on + strand, within PagCFBP13505_RS12245 at 56.746 kb on - strand, within PagCFBP13505_RS12245 at 56.746 kb on - strand, within PagCFBP13505_RS12245 at 56.838 kb on + strand, within PagCFBP13505_RS12245 at 56.838 kb on + strand, within PagCFBP13505_RS12245 at 56.838 kb on + strand, within PagCFBP13505_RS12245 at 56.838 kb on + strand, within PagCFBP13505_RS12245 at 56.860 kb on + strand, within PagCFBP13505_RS12245 at 56.861 kb on - strand, within PagCFBP13505_RS12245 at 56.861 kb on - strand, within PagCFBP13505_RS12245 at 57.057 kb on + strand, within PagCFBP13505_RS12245 at 57.091 kb on + strand at 57.091 kb on + strand at 57.091 kb on + strand at 57.092 kb on - strand at 57.092 kb on - strand at 57.092 kb on - strand at 57.168 kb on + strand at 57.198 kb on + strand at 57.247 kb on - strand at 57.345 kb on + strand at 57.345 kb on + strand at 57.346 kb on - strand at 57.346 kb on - strand at 57.423 kb on + strand, within PagCFBP13505_RS12250 at 57.423 kb on + strand, within PagCFBP13505_RS12250 at 57.424 kb on - strand, within PagCFBP13505_RS12250 at 57.426 kb on + strand, within PagCFBP13505_RS12250 at 57.427 kb on - strand, within PagCFBP13505_RS12250 at 57.479 kb on + strand, within PagCFBP13505_RS12250 at 57.605 kb on + strand, within PagCFBP13505_RS12250 at 57.706 kb on + strand, within PagCFBP13505_RS12250 at 57.707 kb on - strand, within PagCFBP13505_RS12250 at 57.707 kb on - strand, within PagCFBP13505_RS12250 at 57.770 kb on - strand, within PagCFBP13505_RS12250 at 57.849 kb on - strand, within PagCFBP13505_RS12250 at 57.897 kb on - strand, within PagCFBP13505_RS12250 at 57.952 kb on + strand, within PagCFBP13505_RS12250 at 57.959 kb on + strand, within PagCFBP13505_RS12250 at 58.032 kb on + strand, within PagCFBP13505_RS12250 at 58.032 kb on + strand, within PagCFBP13505_RS12250 at 58.032 kb on + strand, within PagCFBP13505_RS12250 at 58.033 kb on - strand, within PagCFBP13505_RS12250 at 58.033 kb on - strand, within PagCFBP13505_RS12250 at 58.089 kb on + strand, within PagCFBP13505_RS12250 at 58.090 kb on - strand, within PagCFBP13505_RS12250 at 58.183 kb on + strand, within PagCFBP13505_RS12250 at 58.184 kb on - strand, within PagCFBP13505_RS12250 at 58.206 kb on + strand, within PagCFBP13505_RS12250 at 58.206 kb on + strand, within PagCFBP13505_RS12250 at 58.207 kb on - strand, within PagCFBP13505_RS12250 at 58.207 kb on - strand, within PagCFBP13505_RS12250 at 58.287 kb on - strand, within PagCFBP13505_RS12250 at 58.368 kb on + strand, within PagCFBP13505_RS12250 at 58.368 kb on + strand, within PagCFBP13505_RS12250 at 58.369 kb on - strand, within PagCFBP13505_RS12250 at 58.369 kb on - strand, within PagCFBP13505_RS12250 at 58.444 kb on - strand, within PagCFBP13505_RS12250 at 58.444 kb on - strand, within PagCFBP13505_RS12250 at 58.482 kb on + strand, within PagCFBP13505_RS12250 at 58.483 kb on - strand, within PagCFBP13505_RS12250 at 58.493 kb on + strand, within PagCFBP13505_RS12250 at 58.493 kb on + strand, within PagCFBP13505_RS12250 at 58.563 kb on + strand, within PagCFBP13505_RS12250 at 58.564 kb on - strand, within PagCFBP13505_RS12250 at 58.595 kb on + strand, within PagCFBP13505_RS12250 at 58.596 kb on - strand, within PagCFBP13505_RS12250 at 58.596 kb on - strand, within PagCFBP13505_RS12250 at 58.631 kb on + strand, within PagCFBP13505_RS12250 at 58.632 kb on - strand, within PagCFBP13505_RS12250 at 58.679 kb on + strand, within PagCFBP13505_RS12250 at 58.679 kb on + strand, within PagCFBP13505_RS12250 at 58.680 kb on - strand, within PagCFBP13505_RS12250 at 58.728 kb on - strand, within PagCFBP13505_RS12250 at 58.751 kb on + strand, within PagCFBP13505_RS12250 at 58.793 kb on + strand, within PagCFBP13505_RS12250 at 58.816 kb on + strand, within PagCFBP13505_RS12250 at 58.896 kb on - strand, within PagCFBP13505_RS12250 at 58.898 kb on + strand, within PagCFBP13505_RS12250 at 58.899 kb on - strand, within PagCFBP13505_RS12250 at 58.984 kb on + strand at 58.985 kb on - strand at 58.998 kb on + strand at 58.998 kb on + strand at 58.998 kb on + strand at 58.998 kb on + strand at 59.034 kb on - strand at 59.150 kb on + strand at 59.151 kb on - strand at 59.151 kb on - strand at 59.151 kb on - strand at 59.184 kb on + strand at 59.184 kb on + strand at 59.184 kb on + strand at 59.184 kb on + strand at 59.184 kb on + strand at 59.184 kb on + strand at 59.185 kb on - strand at 59.185 kb on - strand at 59.185 kb on - strand at 59.188 kb on + strand at 59.431 kb on + strand, within PagCFBP13505_RS12255 at 59.432 kb on - strand, within PagCFBP13505_RS12255 at 59.524 kb on + strand, within PagCFBP13505_RS12255 at 59.525 kb on - strand, within PagCFBP13505_RS12255 at 59.525 kb on - strand, within PagCFBP13505_RS12255 at 59.541 kb on + strand, within PagCFBP13505_RS12255 at 59.542 kb on - strand, within PagCFBP13505_RS12255 at 59.542 kb on - strand, within PagCFBP13505_RS12255 at 59.542 kb on - strand, within PagCFBP13505_RS12255 at 59.542 kb on - strand, within PagCFBP13505_RS12255 at 59.661 kb on - strand, within PagCFBP13505_RS12255 at 59.661 kb on - strand, within PagCFBP13505_RS12255 at 59.723 kb on - strand, within PagCFBP13505_RS12255 at 59.728 kb on - strand, within PagCFBP13505_RS12255 at 59.728 kb on - strand, within PagCFBP13505_RS12255 at 59.792 kb on + strand, within PagCFBP13505_RS12255 at 59.792 kb on + strand, within PagCFBP13505_RS12255 at 59.793 kb on - strand, within PagCFBP13505_RS12255 at 59.793 kb on - strand, within PagCFBP13505_RS12255 at 59.844 kb on - strand, within PagCFBP13505_RS12255 at 59.968 kb on + strand at 59.969 kb on - strand at 59.969 kb on - strand at 60.066 kb on - strand at 60.069 kb on + strand at 60.069 kb on + strand at 60.069 kb on + strand at 60.069 kb on + strand at 60.069 kb on + strand at 60.069 kb on + strand at 60.069 kb on + strand at 60.113 kb on - strand at 60.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 56,221 - -0.0 56,221 - -0.6 56,245 + -1.9 56,245 + -0.6 56,245 + -1.1 56,246 - -0.5 56,248 - +0.5 56,428 + PagCFBP13505_RS12245 0.23 -0.4 56,428 + PagCFBP13505_RS12245 0.23 -1.0 56,429 - PagCFBP13505_RS12245 0.24 +0.4 56,429 - PagCFBP13505_RS12245 0.24 +0.2 56,484 + PagCFBP13505_RS12245 0.29 -0.4 56,557 + PagCFBP13505_RS12245 0.37 -0.6 56,557 + PagCFBP13505_RS12245 0.37 -1.2 56,557 + PagCFBP13505_RS12245 0.37 -1.4 56,558 - PagCFBP13505_RS12245 0.37 +0.2 56,558 - PagCFBP13505_RS12245 0.37 +0.1 56,610 + PagCFBP13505_RS12245 0.42 +0.1 56,693 - PagCFBP13505_RS12245 0.50 -0.2 56,745 + PagCFBP13505_RS12245 0.56 +1.4 56,746 - PagCFBP13505_RS12245 0.56 -0.1 56,746 - PagCFBP13505_RS12245 0.56 -0.4 56,838 + PagCFBP13505_RS12245 0.65 -0.6 56,838 + PagCFBP13505_RS12245 0.65 +0.7 56,838 + PagCFBP13505_RS12245 0.65 -0.2 56,838 + PagCFBP13505_RS12245 0.65 +0.2 56,860 + PagCFBP13505_RS12245 0.67 +1.2 56,861 - PagCFBP13505_RS12245 0.67 +0.8 56,861 - PagCFBP13505_RS12245 0.67 -1.1 57,057 + PagCFBP13505_RS12245 0.87 +0.4 57,091 + -0.5 57,091 + -2.2 57,091 + +0.1 57,092 - -0.0 57,092 - +0.3 57,092 - +0.0 57,168 + +0.7 57,198 + -0.6 57,247 - +0.4 57,345 + +1.2 57,345 + +0.4 57,346 - -0.4 57,346 - -0.7 57,423 + PagCFBP13505_RS12250 0.12 -0.3 57,423 + PagCFBP13505_RS12250 0.12 -0.8 57,424 - PagCFBP13505_RS12250 0.12 -0.6 57,426 + PagCFBP13505_RS12250 0.13 +0.0 57,427 - PagCFBP13505_RS12250 0.13 -1.1 57,479 + PagCFBP13505_RS12250 0.15 -1.3 57,605 + PagCFBP13505_RS12250 0.22 -0.8 57,706 + PagCFBP13505_RS12250 0.27 +0.0 57,707 - PagCFBP13505_RS12250 0.27 -0.3 57,707 - PagCFBP13505_RS12250 0.27 -1.1 57,770 - PagCFBP13505_RS12250 0.30 -1.0 57,849 - PagCFBP13505_RS12250 0.34 +1.5 57,897 - PagCFBP13505_RS12250 0.36 -0.2 57,952 + PagCFBP13505_RS12250 0.39 +1.0 57,959 + PagCFBP13505_RS12250 0.39 -0.5 58,032 + PagCFBP13505_RS12250 0.43 -0.2 58,032 + PagCFBP13505_RS12250 0.43 +0.8 58,032 + PagCFBP13505_RS12250 0.43 -1.6 58,033 - PagCFBP13505_RS12250 0.43 +0.0 58,033 - PagCFBP13505_RS12250 0.43 +0.3 58,089 + PagCFBP13505_RS12250 0.46 -0.4 58,090 - PagCFBP13505_RS12250 0.46 -0.0 58,183 + PagCFBP13505_RS12250 0.51 +0.5 58,184 - PagCFBP13505_RS12250 0.51 -0.3 58,206 + PagCFBP13505_RS12250 0.52 -1.6 58,206 + PagCFBP13505_RS12250 0.52 -0.9 58,207 - PagCFBP13505_RS12250 0.52 -0.1 58,207 - PagCFBP13505_RS12250 0.52 +0.2 58,287 - PagCFBP13505_RS12250 0.56 -1.9 58,368 + PagCFBP13505_RS12250 0.60 -0.1 58,368 + PagCFBP13505_RS12250 0.60 +0.1 58,369 - PagCFBP13505_RS12250 0.60 -1.5 58,369 - PagCFBP13505_RS12250 0.60 -0.9 58,444 - PagCFBP13505_RS12250 0.64 +0.8 58,444 - PagCFBP13505_RS12250 0.64 -1.4 58,482 + PagCFBP13505_RS12250 0.66 +0.9 58,483 - PagCFBP13505_RS12250 0.66 -0.4 58,493 + PagCFBP13505_RS12250 0.66 -0.2 58,493 + PagCFBP13505_RS12250 0.66 -1.7 58,563 + PagCFBP13505_RS12250 0.70 -1.0 58,564 - PagCFBP13505_RS12250 0.70 -0.6 58,595 + PagCFBP13505_RS12250 0.72 +0.5 58,596 - PagCFBP13505_RS12250 0.72 -0.1 58,596 - PagCFBP13505_RS12250 0.72 -1.1 58,631 + PagCFBP13505_RS12250 0.73 +0.5 58,632 - PagCFBP13505_RS12250 0.73 +0.3 58,679 + PagCFBP13505_RS12250 0.76 -0.5 58,679 + PagCFBP13505_RS12250 0.76 +0.1 58,680 - PagCFBP13505_RS12250 0.76 +2.4 58,728 - PagCFBP13505_RS12250 0.78 +1.6 58,751 + PagCFBP13505_RS12250 0.79 +0.4 58,793 + PagCFBP13505_RS12250 0.82 -0.0 58,816 + PagCFBP13505_RS12250 0.83 -0.3 58,896 - PagCFBP13505_RS12250 0.87 +0.4 58,898 + PagCFBP13505_RS12250 0.87 -0.8 58,899 - PagCFBP13505_RS12250 0.87 -1.0 58,984 + -0.8 58,985 - -0.9 58,998 + +2.2 58,998 + -1.2 58,998 + +0.2 58,998 + +0.3 59,034 - +0.4 59,150 + +1.3 59,151 - +0.6 59,151 - +1.4 59,151 - -1.0 59,184 + +1.7 59,184 + +0.6 59,184 + +1.1 59,184 + +1.2 59,184 + -0.6 59,184 + +0.3 59,185 - -0.4 59,185 - +0.4 59,185 - +0.8 59,188 + -1.1 59,431 + PagCFBP13505_RS12255 0.30 -0.3 59,432 - PagCFBP13505_RS12255 0.31 +0.5 59,524 + PagCFBP13505_RS12255 0.41 +0.5 59,525 - PagCFBP13505_RS12255 0.41 -0.2 59,525 - PagCFBP13505_RS12255 0.41 +0.4 59,541 + PagCFBP13505_RS12255 0.43 +0.2 59,542 - PagCFBP13505_RS12255 0.43 -0.4 59,542 - PagCFBP13505_RS12255 0.43 +1.0 59,542 - PagCFBP13505_RS12255 0.43 -0.6 59,542 - PagCFBP13505_RS12255 0.43 -0.0 59,661 - PagCFBP13505_RS12255 0.56 +0.5 59,661 - PagCFBP13505_RS12255 0.56 -0.1 59,723 - PagCFBP13505_RS12255 0.63 +0.5 59,728 - PagCFBP13505_RS12255 0.63 -0.9 59,728 - PagCFBP13505_RS12255 0.63 +0.1 59,792 + PagCFBP13505_RS12255 0.70 -0.2 59,792 + PagCFBP13505_RS12255 0.70 -1.6 59,793 - PagCFBP13505_RS12255 0.71 +0.1 59,793 - PagCFBP13505_RS12255 0.71 -0.3 59,844 - PagCFBP13505_RS12255 0.76 -0.2 59,968 + -0.4 59,969 - +2.5 59,969 - -0.5 60,066 - -0.6 60,069 + -0.2 60,069 + +0.5 60,069 + -0.2 60,069 + +0.9 60,069 + -0.2 60,069 + -0.6 60,069 + -0.4 60,113 - +0.0 60,113 - +0.0
Or see this region's nucleotide sequence