Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS12195 and PagCFBP13505_RS12200 are separated by 179 nucleotides PagCFBP13505_RS12200 and PagCFBP13505_RS12205 are separated by 281 nucleotides
PagCFBP13505_RS12195: PagCFBP13505_RS12195 - autotransporter outer membrane beta-barrel domain-containing protein, at 46,728 to 47,918
_RS12195
PagCFBP13505_RS12200: PagCFBP13505_RS12200 - hemolysin, at 48,098 to 48,301
_RS12200
PagCFBP13505_RS12205: PagCFBP13505_RS12205 - PACE efflux transporter, at 48,583 to 48,984
_RS12205
Position (kb) 48
49 Strain fitness (log2 ratio) -2
-1
0
1
2 at 47.205 kb on - strand, within PagCFBP13505_RS12195 at 47.205 kb on - strand, within PagCFBP13505_RS12195 at 47.205 kb on - strand, within PagCFBP13505_RS12195 at 47.274 kb on + strand, within PagCFBP13505_RS12195 at 47.275 kb on - strand, within PagCFBP13505_RS12195 at 47.275 kb on - strand, within PagCFBP13505_RS12195 at 47.276 kb on + strand, within PagCFBP13505_RS12195 at 47.340 kb on + strand, within PagCFBP13505_RS12195 at 47.341 kb on - strand, within PagCFBP13505_RS12195 at 47.388 kb on + strand, within PagCFBP13505_RS12195 at 47.388 kb on + strand, within PagCFBP13505_RS12195 at 47.388 kb on + strand, within PagCFBP13505_RS12195 at 47.389 kb on - strand, within PagCFBP13505_RS12195 at 47.389 kb on - strand, within PagCFBP13505_RS12195 at 47.389 kb on - strand, within PagCFBP13505_RS12195 at 47.390 kb on + strand, within PagCFBP13505_RS12195 at 47.390 kb on + strand, within PagCFBP13505_RS12195 at 47.390 kb on + strand, within PagCFBP13505_RS12195 at 47.390 kb on + strand, within PagCFBP13505_RS12195 at 47.390 kb on + strand, within PagCFBP13505_RS12195 at 47.390 kb on + strand, within PagCFBP13505_RS12195 at 47.390 kb on + strand, within PagCFBP13505_RS12195 at 47.391 kb on - strand, within PagCFBP13505_RS12195 at 47.391 kb on - strand, within PagCFBP13505_RS12195 at 47.391 kb on - strand, within PagCFBP13505_RS12195 at 47.394 kb on + strand, within PagCFBP13505_RS12195 at 47.394 kb on + strand, within PagCFBP13505_RS12195 at 47.394 kb on + strand, within PagCFBP13505_RS12195 at 47.394 kb on + strand, within PagCFBP13505_RS12195 at 47.395 kb on - strand, within PagCFBP13505_RS12195 at 47.411 kb on - strand, within PagCFBP13505_RS12195 at 47.487 kb on + strand, within PagCFBP13505_RS12195 at 47.510 kb on + strand, within PagCFBP13505_RS12195 at 47.511 kb on - strand, within PagCFBP13505_RS12195 at 47.520 kb on - strand, within PagCFBP13505_RS12195 at 47.529 kb on + strand, within PagCFBP13505_RS12195 at 47.563 kb on - strand, within PagCFBP13505_RS12195 at 47.563 kb on - strand, within PagCFBP13505_RS12195 at 47.614 kb on - strand, within PagCFBP13505_RS12195 at 47.614 kb on - strand, within PagCFBP13505_RS12195 at 47.614 kb on - strand, within PagCFBP13505_RS12195 at 47.703 kb on + strand, within PagCFBP13505_RS12195 at 47.703 kb on + strand, within PagCFBP13505_RS12195 at 47.884 kb on - strand at 47.947 kb on - strand at 47.947 kb on - strand at 47.949 kb on - strand at 48.007 kb on - strand at 48.091 kb on - strand at 48.138 kb on + strand, within PagCFBP13505_RS12200 at 48.139 kb on - strand, within PagCFBP13505_RS12200 at 48.178 kb on - strand, within PagCFBP13505_RS12200 at 48.229 kb on - strand, within PagCFBP13505_RS12200 at 48.348 kb on + strand at 48.358 kb on + strand at 48.419 kb on + strand at 48.421 kb on + strand at 48.422 kb on - strand at 48.422 kb on - strand at 48.584 kb on + strand at 48.602 kb on + strand at 48.608 kb on + strand at 48.663 kb on + strand, within PagCFBP13505_RS12205 at 48.700 kb on + strand, within PagCFBP13505_RS12205 at 48.704 kb on - strand, within PagCFBP13505_RS12205 at 48.958 kb on - strand at 48.998 kb on + strand at 49.090 kb on + strand at 49.173 kb on + strand at 49.224 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 47,205 - PagCFBP13505_RS12195 0.40 -0.3 47,205 - PagCFBP13505_RS12195 0.40 +1.0 47,205 - PagCFBP13505_RS12195 0.40 -0.5 47,274 + PagCFBP13505_RS12195 0.46 +0.9 47,275 - PagCFBP13505_RS12195 0.46 -1.2 47,275 - PagCFBP13505_RS12195 0.46 -0.3 47,276 + PagCFBP13505_RS12195 0.46 +0.4 47,340 + PagCFBP13505_RS12195 0.51 +0.9 47,341 - PagCFBP13505_RS12195 0.51 -0.6 47,388 + PagCFBP13505_RS12195 0.55 -1.3 47,388 + PagCFBP13505_RS12195 0.55 -0.3 47,388 + PagCFBP13505_RS12195 0.55 +0.7 47,389 - PagCFBP13505_RS12195 0.55 -2.2 47,389 - PagCFBP13505_RS12195 0.55 -0.4 47,389 - PagCFBP13505_RS12195 0.55 -0.1 47,390 + PagCFBP13505_RS12195 0.56 +0.5 47,390 + PagCFBP13505_RS12195 0.56 +0.0 47,390 + PagCFBP13505_RS12195 0.56 -0.2 47,390 + PagCFBP13505_RS12195 0.56 -0.9 47,390 + PagCFBP13505_RS12195 0.56 -0.2 47,390 + PagCFBP13505_RS12195 0.56 +0.1 47,390 + PagCFBP13505_RS12195 0.56 +0.4 47,391 - PagCFBP13505_RS12195 0.56 -0.3 47,391 - PagCFBP13505_RS12195 0.56 -0.9 47,391 - PagCFBP13505_RS12195 0.56 +0.4 47,394 + PagCFBP13505_RS12195 0.56 +1.4 47,394 + PagCFBP13505_RS12195 0.56 +0.2 47,394 + PagCFBP13505_RS12195 0.56 -1.6 47,394 + PagCFBP13505_RS12195 0.56 -0.1 47,395 - PagCFBP13505_RS12195 0.56 -0.5 47,411 - PagCFBP13505_RS12195 0.57 -0.7 47,487 + PagCFBP13505_RS12195 0.64 +0.8 47,510 + PagCFBP13505_RS12195 0.66 +0.4 47,511 - PagCFBP13505_RS12195 0.66 -1.3 47,520 - PagCFBP13505_RS12195 0.66 -0.8 47,529 + PagCFBP13505_RS12195 0.67 -0.6 47,563 - PagCFBP13505_RS12195 0.70 -0.9 47,563 - PagCFBP13505_RS12195 0.70 -1.3 47,614 - PagCFBP13505_RS12195 0.74 -0.3 47,614 - PagCFBP13505_RS12195 0.74 +0.5 47,614 - PagCFBP13505_RS12195 0.74 -1.2 47,703 + PagCFBP13505_RS12195 0.82 -1.2 47,703 + PagCFBP13505_RS12195 0.82 +0.2 47,884 - -0.4 47,947 - -1.3 47,947 - -0.2 47,949 - +0.4 48,007 - +0.2 48,091 - -0.5 48,138 + PagCFBP13505_RS12200 0.20 +0.2 48,139 - PagCFBP13505_RS12200 0.20 -1.6 48,178 - PagCFBP13505_RS12200 0.39 +1.2 48,229 - PagCFBP13505_RS12200 0.64 -0.2 48,348 + +0.8 48,358 + -0.2 48,419 + -1.0 48,421 + +0.2 48,422 - +0.6 48,422 - -0.3 48,584 + -0.3 48,602 + -0.5 48,608 + -0.2 48,663 + PagCFBP13505_RS12205 0.20 +0.4 48,700 + PagCFBP13505_RS12205 0.29 +2.2 48,704 - PagCFBP13505_RS12205 0.30 +0.0 48,958 - +0.7 48,998 + -0.1 49,090 + +0.2 49,173 + -1.1 49,224 + +0.2
Or see this region's nucleotide sequence