Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS02180 and PagCFBP13505_RS02185 are separated by 23 nucleotides PagCFBP13505_RS02185 and PagCFBP13505_RS02190 are separated by 161 nucleotides PagCFBP13505_RS02190 and PagCFBP13505_RS02195 are separated by 195 nucleotides
PagCFBP13505_RS02180: PagCFBP13505_RS02180 - chemotaxis protein CheA, at 500,974 to 502,962
_RS02180
PagCFBP13505_RS02185: PagCFBP13505_RS02185 - chemotaxis protein CheW, at 502,986 to 503,483
_RS02185
PagCFBP13505_RS02190: PagCFBP13505_RS02190 - HAMP domain-containing protein, at 503,645 to 505,318
_RS02190
PagCFBP13505_RS02195: PagCFBP13505_RS02195 - HAMP domain-containing protein, at 505,514 to 507,076
_RS02195
Position (kb) 503
504
505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 502.833 kb on + strand at 502.833 kb on + strand at 502.834 kb on - strand at 502.834 kb on - strand at 502.837 kb on + strand at 502.837 kb on + strand at 502.884 kb on + strand at 502.885 kb on - strand at 502.926 kb on + strand at 502.982 kb on + strand at 502.983 kb on - strand at 503.109 kb on + strand, within PagCFBP13505_RS02185 at 503.189 kb on + strand, within PagCFBP13505_RS02185 at 503.189 kb on + strand, within PagCFBP13505_RS02185 at 503.189 kb on + strand, within PagCFBP13505_RS02185 at 503.229 kb on + strand, within PagCFBP13505_RS02185 at 503.249 kb on + strand, within PagCFBP13505_RS02185 at 503.482 kb on - strand at 503.576 kb on + strand at 503.707 kb on - strand at 503.742 kb on + strand at 503.791 kb on + strand at 503.813 kb on + strand, within PagCFBP13505_RS02190 at 503.814 kb on - strand, within PagCFBP13505_RS02190 at 503.814 kb on - strand, within PagCFBP13505_RS02190 at 503.815 kb on + strand, within PagCFBP13505_RS02190 at 503.815 kb on + strand, within PagCFBP13505_RS02190 at 503.816 kb on - strand, within PagCFBP13505_RS02190 at 503.825 kb on - strand, within PagCFBP13505_RS02190 at 503.875 kb on + strand, within PagCFBP13505_RS02190 at 503.876 kb on - strand, within PagCFBP13505_RS02190 at 504.003 kb on + strand, within PagCFBP13505_RS02190 at 504.003 kb on + strand, within PagCFBP13505_RS02190 at 504.004 kb on - strand, within PagCFBP13505_RS02190 at 504.035 kb on + strand, within PagCFBP13505_RS02190 at 504.036 kb on - strand, within PagCFBP13505_RS02190 at 504.070 kb on - strand, within PagCFBP13505_RS02190 at 504.175 kb on + strand, within PagCFBP13505_RS02190 at 504.320 kb on - strand, within PagCFBP13505_RS02190 at 504.766 kb on + strand, within PagCFBP13505_RS02190 at 504.766 kb on + strand, within PagCFBP13505_RS02190 at 504.766 kb on + strand, within PagCFBP13505_RS02190 at 504.767 kb on - strand, within PagCFBP13505_RS02190 at 504.767 kb on - strand, within PagCFBP13505_RS02190 at 504.769 kb on + strand, within PagCFBP13505_RS02190 at 504.769 kb on + strand, within PagCFBP13505_RS02190 at 504.770 kb on - strand, within PagCFBP13505_RS02190 at 505.165 kb on - strand at 505.297 kb on + strand at 505.446 kb on - strand at 505.451 kb on + strand at 505.451 kb on + strand at 505.451 kb on + strand at 505.452 kb on - strand at 505.491 kb on - strand at 505.496 kb on - strand at 505.615 kb on + strand at 505.684 kb on + strand, within PagCFBP13505_RS02195 at 505.684 kb on + strand, within PagCFBP13505_RS02195 at 505.795 kb on + strand, within PagCFBP13505_RS02195 at 505.838 kb on + strand, within PagCFBP13505_RS02195 at 505.970 kb on - strand, within PagCFBP13505_RS02195 at 505.978 kb on + strand, within PagCFBP13505_RS02195 at 506.012 kb on + strand, within PagCFBP13505_RS02195 at 506.012 kb on + strand, within PagCFBP13505_RS02195 at 506.012 kb on + strand, within PagCFBP13505_RS02195 at 506.012 kb on + strand, within PagCFBP13505_RS02195 at 506.012 kb on + strand, within PagCFBP13505_RS02195 at 506.012 kb on + strand, within PagCFBP13505_RS02195 at 506.013 kb on - strand, within PagCFBP13505_RS02195 at 506.013 kb on - strand, within PagCFBP13505_RS02195 at 506.013 kb on - strand, within PagCFBP13505_RS02195 at 506.056 kb on + strand, within PagCFBP13505_RS02195 at 506.080 kb on + strand, within PagCFBP13505_RS02195 at 506.080 kb on + strand, within PagCFBP13505_RS02195 at 506.121 kb on + strand, within PagCFBP13505_RS02195 at 506.252 kb on - strand, within PagCFBP13505_RS02195
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 502,833 + +1.2 502,833 + +0.5 502,834 - -2.9 502,834 - -0.0 502,837 + +0.3 502,837 + -1.0 502,884 + +1.4 502,885 - -0.0 502,926 + -0.6 502,982 + +1.8 502,983 - -0.8 503,109 + PagCFBP13505_RS02185 0.25 -2.3 503,189 + PagCFBP13505_RS02185 0.41 +0.7 503,189 + PagCFBP13505_RS02185 0.41 +0.1 503,189 + PagCFBP13505_RS02185 0.41 -0.8 503,229 + PagCFBP13505_RS02185 0.49 +0.3 503,249 + PagCFBP13505_RS02185 0.53 +1.0 503,482 - +1.0 503,576 + -1.0 503,707 - -0.0 503,742 + +0.4 503,791 + +0.5 503,813 + PagCFBP13505_RS02190 0.10 -1.3 503,814 - PagCFBP13505_RS02190 0.10 -1.0 503,814 - PagCFBP13505_RS02190 0.10 -0.3 503,815 + PagCFBP13505_RS02190 0.10 +1.4 503,815 + PagCFBP13505_RS02190 0.10 -0.3 503,816 - PagCFBP13505_RS02190 0.10 +0.6 503,825 - PagCFBP13505_RS02190 0.11 -0.7 503,875 + PagCFBP13505_RS02190 0.14 -0.4 503,876 - PagCFBP13505_RS02190 0.14 +1.3 504,003 + PagCFBP13505_RS02190 0.21 -2.0 504,003 + PagCFBP13505_RS02190 0.21 +1.2 504,004 - PagCFBP13505_RS02190 0.21 +0.7 504,035 + PagCFBP13505_RS02190 0.23 -0.0 504,036 - PagCFBP13505_RS02190 0.23 -1.1 504,070 - PagCFBP13505_RS02190 0.25 -0.5 504,175 + PagCFBP13505_RS02190 0.32 -0.2 504,320 - PagCFBP13505_RS02190 0.40 +0.2 504,766 + PagCFBP13505_RS02190 0.67 +0.1 504,766 + PagCFBP13505_RS02190 0.67 +0.6 504,766 + PagCFBP13505_RS02190 0.67 +0.4 504,767 - PagCFBP13505_RS02190 0.67 -0.3 504,767 - PagCFBP13505_RS02190 0.67 -0.8 504,769 + PagCFBP13505_RS02190 0.67 -0.5 504,769 + PagCFBP13505_RS02190 0.67 +0.3 504,770 - PagCFBP13505_RS02190 0.67 -0.2 505,165 - -0.9 505,297 + -0.1 505,446 - +0.4 505,451 + -0.3 505,451 + +0.5 505,451 + +0.5 505,452 - -0.6 505,491 - -0.0 505,496 - +0.4 505,615 + +1.1 505,684 + PagCFBP13505_RS02195 0.11 +0.5 505,684 + PagCFBP13505_RS02195 0.11 +0.6 505,795 + PagCFBP13505_RS02195 0.18 -1.4 505,838 + PagCFBP13505_RS02195 0.21 +0.5 505,970 - PagCFBP13505_RS02195 0.29 -0.8 505,978 + PagCFBP13505_RS02195 0.30 -0.1 506,012 + PagCFBP13505_RS02195 0.32 +2.3 506,012 + PagCFBP13505_RS02195 0.32 +1.4 506,012 + PagCFBP13505_RS02195 0.32 -0.3 506,012 + PagCFBP13505_RS02195 0.32 -0.5 506,012 + PagCFBP13505_RS02195 0.32 +0.4 506,012 + PagCFBP13505_RS02195 0.32 -0.9 506,013 - PagCFBP13505_RS02195 0.32 -0.9 506,013 - PagCFBP13505_RS02195 0.32 +0.1 506,013 - PagCFBP13505_RS02195 0.32 -0.2 506,056 + PagCFBP13505_RS02195 0.35 -0.2 506,080 + PagCFBP13505_RS02195 0.36 +0.6 506,080 + PagCFBP13505_RS02195 0.36 -0.3 506,121 + PagCFBP13505_RS02195 0.39 +0.7 506,252 - PagCFBP13505_RS02195 0.47 +0.7
Or see this region's nucleotide sequence