Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS01390 and PagCFBP13505_RS01395 are separated by 119 nucleotides PagCFBP13505_RS01395 and PagCFBP13505_RS01400 are separated by 430 nucleotides PagCFBP13505_RS01400 and PagCFBP13505_RS01405 are separated by 654 nucleotides
PagCFBP13505_RS01390: PagCFBP13505_RS01390 - hypothetical protein, at 334,229 to 334,444
_RS01390
PagCFBP13505_RS01395: PagCFBP13505_RS01395 - hypothetical protein, at 334,564 to 334,824
_RS01395
PagCFBP13505_RS01400: PagCFBP13505_RS01400 - HAMP domain-containing protein, at 335,255 to 337,177
_RS01400
PagCFBP13505_RS01405: PagCFBP13505_RS01405 - hypothetical protein, at 337,832 to 338,104
_RS01405
Position (kb) 335
336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 334.291 kb on + strand, within PagCFBP13505_RS01390 at 334.322 kb on + strand, within PagCFBP13505_RS01390 at 334.386 kb on - strand, within PagCFBP13505_RS01390 at 334.508 kb on - strand at 334.508 kb on - strand at 334.515 kb on + strand at 334.515 kb on + strand at 334.516 kb on - strand at 334.516 kb on - strand at 334.516 kb on - strand at 334.548 kb on + strand at 334.676 kb on - strand, within PagCFBP13505_RS01395 at 334.676 kb on - strand, within PagCFBP13505_RS01395 at 334.677 kb on + strand, within PagCFBP13505_RS01395 at 334.744 kb on - strand, within PagCFBP13505_RS01395 at 334.749 kb on + strand, within PagCFBP13505_RS01395 at 334.749 kb on + strand, within PagCFBP13505_RS01395 at 334.797 kb on + strand, within PagCFBP13505_RS01395 at 334.823 kb on - strand at 334.852 kb on + strand at 334.911 kb on + strand at 334.959 kb on + strand at 334.960 kb on - strand at 334.960 kb on - strand at 334.963 kb on + strand at 335.014 kb on - strand at 335.069 kb on + strand at 335.069 kb on + strand at 335.069 kb on + strand at 335.070 kb on - strand at 335.073 kb on - strand at 335.136 kb on + strand at 335.136 kb on + strand at 335.136 kb on + strand at 335.138 kb on + strand at 335.139 kb on - strand at 335.207 kb on - strand at 335.207 kb on - strand at 335.239 kb on - strand at 335.256 kb on + strand at 335.309 kb on + strand at 335.373 kb on - strand at 335.548 kb on + strand, within PagCFBP13505_RS01400 at 335.548 kb on + strand, within PagCFBP13505_RS01400 at 335.551 kb on + strand, within PagCFBP13505_RS01400 at 335.551 kb on + strand, within PagCFBP13505_RS01400 at 335.551 kb on + strand, within PagCFBP13505_RS01400 at 336.049 kb on + strand, within PagCFBP13505_RS01400 at 336.052 kb on + strand, within PagCFBP13505_RS01400 at 336.052 kb on + strand, within PagCFBP13505_RS01400 at 336.147 kb on - strand, within PagCFBP13505_RS01400 at 336.167 kb on + strand, within PagCFBP13505_RS01400 at 336.220 kb on + strand, within PagCFBP13505_RS01400 at 336.220 kb on + strand, within PagCFBP13505_RS01400 at 336.221 kb on - strand, within PagCFBP13505_RS01400 at 336.550 kb on + strand, within PagCFBP13505_RS01400 at 336.585 kb on + strand, within PagCFBP13505_RS01400 at 336.586 kb on - strand, within PagCFBP13505_RS01400 at 336.625 kb on + strand, within PagCFBP13505_RS01400 at 336.835 kb on + strand, within PagCFBP13505_RS01400 at 336.839 kb on + strand, within PagCFBP13505_RS01400 at 336.839 kb on + strand, within PagCFBP13505_RS01400 at 336.887 kb on - strand, within PagCFBP13505_RS01400 at 336.904 kb on + strand, within PagCFBP13505_RS01400 at 336.905 kb on - strand, within PagCFBP13505_RS01400 at 336.906 kb on + strand, within PagCFBP13505_RS01400 at 336.917 kb on + strand, within PagCFBP13505_RS01400 at 336.917 kb on + strand, within PagCFBP13505_RS01400 at 336.917 kb on + strand, within PagCFBP13505_RS01400 at 336.918 kb on - strand, within PagCFBP13505_RS01400 at 336.969 kb on + strand, within PagCFBP13505_RS01400 at 336.975 kb on + strand, within PagCFBP13505_RS01400 at 337.005 kb on - strand at 337.028 kb on - strand at 337.054 kb on + strand at 337.190 kb on + strand at 337.198 kb on + strand at 337.344 kb on + strand at 337.548 kb on + strand at 337.599 kb on + strand at 337.600 kb on - strand at 337.637 kb on + strand at 337.666 kb on + strand at 337.666 kb on + strand at 337.666 kb on + strand at 337.666 kb on + strand at 337.667 kb on - strand at 337.667 kb on - strand at 337.667 kb on - strand at 337.697 kb on - strand at 337.763 kb on - strand at 337.763 kb on - strand at 337.769 kb on - strand at 337.769 kb on - strand at 337.772 kb on + strand at 337.773 kb on - strand at 337.799 kb on + strand at 337.814 kb on + strand at 337.815 kb on - strand at 337.851 kb on - strand at 337.927 kb on + strand, within PagCFBP13505_RS01405 at 337.927 kb on + strand, within PagCFBP13505_RS01405 at 337.927 kb on + strand, within PagCFBP13505_RS01405 at 337.927 kb on + strand, within PagCFBP13505_RS01405 at 337.927 kb on + strand, within PagCFBP13505_RS01405 at 337.928 kb on - strand, within PagCFBP13505_RS01405 at 337.928 kb on - strand, within PagCFBP13505_RS01405 at 337.928 kb on - strand, within PagCFBP13505_RS01405 at 337.928 kb on - strand, within PagCFBP13505_RS01405 at 338.009 kb on - strand, within PagCFBP13505_RS01405 at 338.021 kb on - strand, within PagCFBP13505_RS01405 at 338.064 kb on + strand, within PagCFBP13505_RS01405 at 338.102 kb on + strand at 338.102 kb on + strand at 338.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 334,291 + PagCFBP13505_RS01390 0.29 -1.7 334,322 + PagCFBP13505_RS01390 0.43 +0.7 334,386 - PagCFBP13505_RS01390 0.73 +0.5 334,508 - +0.7 334,508 - +0.5 334,515 + +0.1 334,515 + +1.5 334,516 - -0.2 334,516 - +1.1 334,516 - +0.1 334,548 + -0.2 334,676 - PagCFBP13505_RS01395 0.43 +0.3 334,676 - PagCFBP13505_RS01395 0.43 -0.5 334,677 + PagCFBP13505_RS01395 0.43 +1.6 334,744 - PagCFBP13505_RS01395 0.69 -0.5 334,749 + PagCFBP13505_RS01395 0.71 +0.4 334,749 + PagCFBP13505_RS01395 0.71 -1.5 334,797 + PagCFBP13505_RS01395 0.89 +0.0 334,823 - +0.5 334,852 + -0.9 334,911 + -0.2 334,959 + +0.4 334,960 - -0.7 334,960 - -0.3 334,963 + -1.3 335,014 - -1.3 335,069 + +0.8 335,069 + -1.5 335,069 + -0.3 335,070 - +1.1 335,073 - -0.1 335,136 + +0.0 335,136 + -0.4 335,136 + +0.2 335,138 + -2.7 335,139 - -0.9 335,207 - +0.6 335,207 - +0.1 335,239 - -1.1 335,256 + -0.6 335,309 + +0.3 335,373 - +0.8 335,548 + PagCFBP13505_RS01400 0.15 -0.3 335,548 + PagCFBP13505_RS01400 0.15 -0.3 335,551 + PagCFBP13505_RS01400 0.15 -0.1 335,551 + PagCFBP13505_RS01400 0.15 -0.3 335,551 + PagCFBP13505_RS01400 0.15 +0.9 336,049 + PagCFBP13505_RS01400 0.41 -1.1 336,052 + PagCFBP13505_RS01400 0.41 -0.8 336,052 + PagCFBP13505_RS01400 0.41 -0.4 336,147 - PagCFBP13505_RS01400 0.46 +1.5 336,167 + PagCFBP13505_RS01400 0.47 +1.5 336,220 + PagCFBP13505_RS01400 0.50 +0.4 336,220 + PagCFBP13505_RS01400 0.50 +0.0 336,221 - PagCFBP13505_RS01400 0.50 +0.4 336,550 + PagCFBP13505_RS01400 0.67 +0.6 336,585 + PagCFBP13505_RS01400 0.69 -0.3 336,586 - PagCFBP13505_RS01400 0.69 -0.6 336,625 + PagCFBP13505_RS01400 0.71 -0.6 336,835 + PagCFBP13505_RS01400 0.82 -1.0 336,839 + PagCFBP13505_RS01400 0.82 -0.8 336,839 + PagCFBP13505_RS01400 0.82 -3.5 336,887 - PagCFBP13505_RS01400 0.85 -0.2 336,904 + PagCFBP13505_RS01400 0.86 +0.7 336,905 - PagCFBP13505_RS01400 0.86 +0.5 336,906 + PagCFBP13505_RS01400 0.86 +0.1 336,917 + PagCFBP13505_RS01400 0.86 -1.1 336,917 + PagCFBP13505_RS01400 0.86 -0.7 336,917 + PagCFBP13505_RS01400 0.86 +0.6 336,918 - PagCFBP13505_RS01400 0.86 +0.6 336,969 + PagCFBP13505_RS01400 0.89 -0.9 336,975 + PagCFBP13505_RS01400 0.89 -1.0 337,005 - -1.2 337,028 - -0.2 337,054 + +0.2 337,190 + -1.7 337,198 + -0.3 337,344 + -1.4 337,548 + -0.5 337,599 + +0.4 337,600 - -0.9 337,637 + -0.5 337,666 + +3.4 337,666 + -0.6 337,666 + -1.1 337,666 + -1.7 337,667 - -0.7 337,667 - -0.6 337,667 - +0.2 337,697 - +1.1 337,763 - +0.1 337,763 - -2.5 337,769 - -1.0 337,769 - -0.6 337,772 + +0.0 337,773 - +1.2 337,799 + -0.5 337,814 + -0.1 337,815 - -0.2 337,851 - +0.9 337,927 + PagCFBP13505_RS01405 0.35 +0.3 337,927 + PagCFBP13505_RS01405 0.35 -0.5 337,927 + PagCFBP13505_RS01405 0.35 -1.2 337,927 + PagCFBP13505_RS01405 0.35 +0.2 337,927 + PagCFBP13505_RS01405 0.35 -0.5 337,928 - PagCFBP13505_RS01405 0.35 -2.2 337,928 - PagCFBP13505_RS01405 0.35 -0.6 337,928 - PagCFBP13505_RS01405 0.35 -0.7 337,928 - PagCFBP13505_RS01405 0.35 +0.1 338,009 - PagCFBP13505_RS01405 0.65 -0.1 338,021 - PagCFBP13505_RS01405 0.69 +0.3 338,064 + PagCFBP13505_RS01405 0.85 +0.1 338,102 + +0.3 338,102 + -0.7 338,157 - -0.2
Or see this region's nucleotide sequence