Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS12235 and PagCFBP13505_RS12240 are separated by 698 nucleotides PagCFBP13505_RS12240 and PagCFBP13505_RS12245 are separated by 1 nucleotides PagCFBP13505_RS12245 and PagCFBP13505_RS12250 overlap by 4 nucleotides
PagCFBP13505_RS12235: PagCFBP13505_RS12235 - YceI family protein, at 53,782 to 54,360
_RS12235
PagCFBP13505_RS12240: PagCFBP13505_RS12240 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 55,059 to 56,195
_RS12240
PagCFBP13505_RS12245: PagCFBP13505_RS12245 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 56,197 to 57,180
_RS12245
PagCFBP13505_RS12250: PagCFBP13505_RS12250 - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 57,177 to 59,156
_RS12250
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 54.062 kb on + strand, within PagCFBP13505_RS12235 at 54.106 kb on + strand, within PagCFBP13505_RS12235 at 54.144 kb on + strand, within PagCFBP13505_RS12235 at 54.145 kb on - strand, within PagCFBP13505_RS12235 at 54.280 kb on - strand, within PagCFBP13505_RS12235 at 54.287 kb on + strand, within PagCFBP13505_RS12235 at 54.287 kb on + strand, within PagCFBP13505_RS12235 at 54.287 kb on + strand, within PagCFBP13505_RS12235 at 54.306 kb on - strand at 54.341 kb on - strand at 54.364 kb on + strand at 54.379 kb on - strand at 54.440 kb on + strand at 54.446 kb on - strand at 54.469 kb on + strand at 54.470 kb on - strand at 54.517 kb on - strand at 54.534 kb on - strand at 54.552 kb on + strand at 54.557 kb on + strand at 54.677 kb on - strand at 54.792 kb on - strand at 54.799 kb on + strand at 54.802 kb on + strand at 54.847 kb on - strand at 54.851 kb on + strand at 54.856 kb on - strand at 54.901 kb on + strand at 54.905 kb on - strand at 54.940 kb on + strand at 54.940 kb on + strand at 54.941 kb on - strand at 55.013 kb on + strand at 55.013 kb on + strand at 55.013 kb on + strand at 55.013 kb on + strand at 55.031 kb on + strand at 55.031 kb on + strand at 55.032 kb on - strand at 55.116 kb on - strand at 55.216 kb on + strand, within PagCFBP13505_RS12240 at 55.216 kb on + strand, within PagCFBP13505_RS12240 at 55.216 kb on + strand, within PagCFBP13505_RS12240 at 55.409 kb on + strand, within PagCFBP13505_RS12240 at 55.409 kb on + strand, within PagCFBP13505_RS12240 at 55.410 kb on - strand, within PagCFBP13505_RS12240 at 55.410 kb on - strand, within PagCFBP13505_RS12240 at 55.430 kb on + strand, within PagCFBP13505_RS12240 at 55.453 kb on + strand, within PagCFBP13505_RS12240 at 55.453 kb on + strand, within PagCFBP13505_RS12240 at 55.453 kb on + strand, within PagCFBP13505_RS12240 at 55.454 kb on - strand, within PagCFBP13505_RS12240 at 55.476 kb on + strand, within PagCFBP13505_RS12240 at 55.476 kb on + strand, within PagCFBP13505_RS12240 at 55.477 kb on - strand, within PagCFBP13505_RS12240 at 55.477 kb on - strand, within PagCFBP13505_RS12240 at 55.477 kb on - strand, within PagCFBP13505_RS12240 at 55.542 kb on + strand, within PagCFBP13505_RS12240 at 55.542 kb on + strand, within PagCFBP13505_RS12240 at 55.542 kb on + strand, within PagCFBP13505_RS12240 at 55.542 kb on + strand, within PagCFBP13505_RS12240 at 55.543 kb on - strand, within PagCFBP13505_RS12240 at 55.543 kb on - strand, within PagCFBP13505_RS12240 at 55.543 kb on - strand, within PagCFBP13505_RS12240 at 55.543 kb on - strand, within PagCFBP13505_RS12240 at 55.664 kb on - strand, within PagCFBP13505_RS12240 at 55.757 kb on + strand, within PagCFBP13505_RS12240 at 55.758 kb on - strand, within PagCFBP13505_RS12240 at 55.758 kb on - strand, within PagCFBP13505_RS12240 at 55.761 kb on + strand, within PagCFBP13505_RS12240 at 55.762 kb on - strand, within PagCFBP13505_RS12240 at 55.762 kb on - strand, within PagCFBP13505_RS12240 at 55.804 kb on + strand, within PagCFBP13505_RS12240 at 55.804 kb on + strand, within PagCFBP13505_RS12240 at 55.804 kb on + strand, within PagCFBP13505_RS12240 at 55.934 kb on + strand, within PagCFBP13505_RS12240 at 55.934 kb on + strand, within PagCFBP13505_RS12240 at 55.935 kb on - strand, within PagCFBP13505_RS12240 at 55.935 kb on - strand, within PagCFBP13505_RS12240 at 55.938 kb on - strand, within PagCFBP13505_RS12240 at 55.982 kb on + strand, within PagCFBP13505_RS12240 at 55.982 kb on + strand, within PagCFBP13505_RS12240 at 56.049 kb on + strand, within PagCFBP13505_RS12240 at 56.049 kb on + strand, within PagCFBP13505_RS12240 at 56.050 kb on - strand, within PagCFBP13505_RS12240 at 56.050 kb on - strand, within PagCFBP13505_RS12240 at 56.074 kb on + strand, within PagCFBP13505_RS12240 at 56.097 kb on - strand at 56.173 kb on + strand at 56.173 kb on + strand at 56.174 kb on - strand at 56.174 kb on - strand at 56.221 kb on - strand at 56.221 kb on - strand at 56.245 kb on + strand at 56.245 kb on + strand at 56.245 kb on + strand at 56.246 kb on - strand at 56.248 kb on - strand at 56.428 kb on + strand, within PagCFBP13505_RS12245 at 56.428 kb on + strand, within PagCFBP13505_RS12245 at 56.429 kb on - strand, within PagCFBP13505_RS12245 at 56.429 kb on - strand, within PagCFBP13505_RS12245 at 56.484 kb on + strand, within PagCFBP13505_RS12245 at 56.557 kb on + strand, within PagCFBP13505_RS12245 at 56.557 kb on + strand, within PagCFBP13505_RS12245 at 56.557 kb on + strand, within PagCFBP13505_RS12245 at 56.558 kb on - strand, within PagCFBP13505_RS12245 at 56.558 kb on - strand, within PagCFBP13505_RS12245 at 56.610 kb on + strand, within PagCFBP13505_RS12245 at 56.693 kb on - strand, within PagCFBP13505_RS12245 at 56.745 kb on + strand, within PagCFBP13505_RS12245 at 56.746 kb on - strand, within PagCFBP13505_RS12245 at 56.746 kb on - strand, within PagCFBP13505_RS12245 at 56.838 kb on + strand, within PagCFBP13505_RS12245 at 56.838 kb on + strand, within PagCFBP13505_RS12245 at 56.838 kb on + strand, within PagCFBP13505_RS12245 at 56.838 kb on + strand, within PagCFBP13505_RS12245 at 56.860 kb on + strand, within PagCFBP13505_RS12245 at 56.861 kb on - strand, within PagCFBP13505_RS12245 at 56.861 kb on - strand, within PagCFBP13505_RS12245 at 57.057 kb on + strand, within PagCFBP13505_RS12245 at 57.091 kb on + strand at 57.091 kb on + strand at 57.091 kb on + strand at 57.092 kb on - strand at 57.092 kb on - strand at 57.092 kb on - strand at 57.168 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 54,062 + PagCFBP13505_RS12235 0.48 +1.7 54,106 + PagCFBP13505_RS12235 0.56 -0.1 54,144 + PagCFBP13505_RS12235 0.63 -0.6 54,145 - PagCFBP13505_RS12235 0.63 +0.7 54,280 - PagCFBP13505_RS12235 0.86 +1.2 54,287 + PagCFBP13505_RS12235 0.87 +0.0 54,287 + PagCFBP13505_RS12235 0.87 -2.6 54,287 + PagCFBP13505_RS12235 0.87 -0.3 54,306 - -0.7 54,341 - +0.7 54,364 + +0.4 54,379 - -0.6 54,440 + +0.5 54,446 - +1.7 54,469 + +0.3 54,470 - +0.1 54,517 - -0.5 54,534 - +0.4 54,552 + -1.6 54,557 + -2.7 54,677 - -0.9 54,792 - -3.2 54,799 + -1.7 54,802 + -0.7 54,847 - -1.0 54,851 + -1.0 54,856 - +0.1 54,901 + +0.7 54,905 - +1.0 54,940 + +0.7 54,940 + +0.8 54,941 - +0.5 55,013 + -0.2 55,013 + +1.6 55,013 + -1.0 55,013 + -0.8 55,031 + +1.1 55,031 + +0.3 55,032 - -0.5 55,116 - +0.5 55,216 + PagCFBP13505_RS12240 0.14 +0.3 55,216 + PagCFBP13505_RS12240 0.14 +0.7 55,216 + PagCFBP13505_RS12240 0.14 +0.4 55,409 + PagCFBP13505_RS12240 0.31 -0.6 55,409 + PagCFBP13505_RS12240 0.31 +0.9 55,410 - PagCFBP13505_RS12240 0.31 -0.6 55,410 - PagCFBP13505_RS12240 0.31 +0.2 55,430 + PagCFBP13505_RS12240 0.33 -2.4 55,453 + PagCFBP13505_RS12240 0.35 +1.0 55,453 + PagCFBP13505_RS12240 0.35 -0.8 55,453 + PagCFBP13505_RS12240 0.35 +0.2 55,454 - PagCFBP13505_RS12240 0.35 +0.4 55,476 + PagCFBP13505_RS12240 0.37 -0.8 55,476 + PagCFBP13505_RS12240 0.37 +0.7 55,477 - PagCFBP13505_RS12240 0.37 +0.2 55,477 - PagCFBP13505_RS12240 0.37 +0.2 55,477 - PagCFBP13505_RS12240 0.37 +3.4 55,542 + PagCFBP13505_RS12240 0.42 +0.3 55,542 + PagCFBP13505_RS12240 0.42 +0.4 55,542 + PagCFBP13505_RS12240 0.42 -1.3 55,542 + PagCFBP13505_RS12240 0.42 +0.3 55,543 - PagCFBP13505_RS12240 0.43 +0.8 55,543 - PagCFBP13505_RS12240 0.43 +0.5 55,543 - PagCFBP13505_RS12240 0.43 +0.6 55,543 - PagCFBP13505_RS12240 0.43 +0.3 55,664 - PagCFBP13505_RS12240 0.53 -0.4 55,757 + PagCFBP13505_RS12240 0.61 +2.1 55,758 - PagCFBP13505_RS12240 0.61 +0.5 55,758 - PagCFBP13505_RS12240 0.61 +0.7 55,761 + PagCFBP13505_RS12240 0.62 +0.2 55,762 - PagCFBP13505_RS12240 0.62 +1.0 55,762 - PagCFBP13505_RS12240 0.62 +1.6 55,804 + PagCFBP13505_RS12240 0.66 +1.9 55,804 + PagCFBP13505_RS12240 0.66 -0.1 55,804 + PagCFBP13505_RS12240 0.66 +0.7 55,934 + PagCFBP13505_RS12240 0.77 -2.4 55,934 + PagCFBP13505_RS12240 0.77 -0.3 55,935 - PagCFBP13505_RS12240 0.77 +1.6 55,935 - PagCFBP13505_RS12240 0.77 +0.5 55,938 - PagCFBP13505_RS12240 0.77 +1.6 55,982 + PagCFBP13505_RS12240 0.81 +0.2 55,982 + PagCFBP13505_RS12240 0.81 -0.4 56,049 + PagCFBP13505_RS12240 0.87 +0.8 56,049 + PagCFBP13505_RS12240 0.87 -0.4 56,050 - PagCFBP13505_RS12240 0.87 -0.6 56,050 - PagCFBP13505_RS12240 0.87 -0.3 56,074 + PagCFBP13505_RS12240 0.89 -0.2 56,097 - +0.3 56,173 + +0.4 56,173 + +1.0 56,174 - +2.0 56,174 - +1.2 56,221 - +0.4 56,221 - +0.5 56,245 + -0.7 56,245 + +0.1 56,245 + +0.7 56,246 - -0.5 56,248 - +0.9 56,428 + PagCFBP13505_RS12245 0.23 -0.2 56,428 + PagCFBP13505_RS12245 0.23 +1.3 56,429 - PagCFBP13505_RS12245 0.24 +1.1 56,429 - PagCFBP13505_RS12245 0.24 +0.1 56,484 + PagCFBP13505_RS12245 0.29 -1.1 56,557 + PagCFBP13505_RS12245 0.37 +0.2 56,557 + PagCFBP13505_RS12245 0.37 -0.4 56,557 + PagCFBP13505_RS12245 0.37 +0.1 56,558 - PagCFBP13505_RS12245 0.37 +1.0 56,558 - PagCFBP13505_RS12245 0.37 -1.6 56,610 + PagCFBP13505_RS12245 0.42 +0.5 56,693 - PagCFBP13505_RS12245 0.50 +1.0 56,745 + PagCFBP13505_RS12245 0.56 +1.7 56,746 - PagCFBP13505_RS12245 0.56 -0.0 56,746 - PagCFBP13505_RS12245 0.56 +0.5 56,838 + PagCFBP13505_RS12245 0.65 -0.6 56,838 + PagCFBP13505_RS12245 0.65 +0.9 56,838 + PagCFBP13505_RS12245 0.65 -1.1 56,838 + PagCFBP13505_RS12245 0.65 +0.6 56,860 + PagCFBP13505_RS12245 0.67 +1.3 56,861 - PagCFBP13505_RS12245 0.67 -0.5 56,861 - PagCFBP13505_RS12245 0.67 +0.6 57,057 + PagCFBP13505_RS12245 0.87 +1.3 57,091 + -1.0 57,091 + +0.5 57,091 + +0.1 57,092 - -0.1 57,092 - -0.0 57,092 - +0.2 57,168 + +0.2
Or see this region's nucleotide sequence