Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS08960 and PagCFBP13505_RS08965 are separated by 72 nucleotides PagCFBP13505_RS08965 and PagCFBP13505_RS08970 are separated by 76 nucleotides PagCFBP13505_RS08970 and PagCFBP13505_RS08975 overlap by 4 nucleotides
PagCFBP13505_RS08960: PagCFBP13505_RS08960 - aspartate carbamoyltransferase regulatory subunit, at 96,156 to 96,620
_RS08960
PagCFBP13505_RS08965: PagCFBP13505_RS08965 - 2-iminobutanoate/2-iminopropanoate deaminase, at 96,693 to 97,079
_RS08965
PagCFBP13505_RS08970: PagCFBP13505_RS08970 - lysophospholipid transporter LplT, at 97,156 to 98,346
_RS08970
PagCFBP13505_RS08975: PagCFBP13505_RS08975 - bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase, at 98,343 to 100,493
_RS08975
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 96.216 kb on - strand, within PagCFBP13505_RS08960 at 96.384 kb on + strand, within PagCFBP13505_RS08960 at 96.420 kb on + strand, within PagCFBP13505_RS08960 at 96.420 kb on + strand, within PagCFBP13505_RS08960 at 96.428 kb on - strand, within PagCFBP13505_RS08960 at 96.428 kb on - strand, within PagCFBP13505_RS08960 at 96.574 kb on - strand at 96.618 kb on + strand at 96.637 kb on + strand at 96.638 kb on - strand at 96.638 kb on - strand at 96.639 kb on + strand at 96.639 kb on + strand at 96.639 kb on + strand at 96.640 kb on - strand at 96.677 kb on - strand at 96.742 kb on - strand, within PagCFBP13505_RS08965 at 96.934 kb on + strand, within PagCFBP13505_RS08965 at 96.934 kb on + strand, within PagCFBP13505_RS08965 at 96.935 kb on - strand, within PagCFBP13505_RS08965 at 96.963 kb on + strand, within PagCFBP13505_RS08965 at 96.963 kb on + strand, within PagCFBP13505_RS08965 at 97.077 kb on + strand at 97.090 kb on + strand at 97.097 kb on + strand at 97.097 kb on + strand at 97.097 kb on + strand at 97.097 kb on + strand at 97.098 kb on - strand at 97.098 kb on - strand at 97.266 kb on + strand at 97.268 kb on + strand at 97.329 kb on + strand, within PagCFBP13505_RS08970 at 97.330 kb on - strand, within PagCFBP13505_RS08970 at 97.427 kb on + strand, within PagCFBP13505_RS08970 at 97.484 kb on - strand, within PagCFBP13505_RS08970 at 97.497 kb on + strand, within PagCFBP13505_RS08970 at 97.498 kb on - strand, within PagCFBP13505_RS08970 at 97.551 kb on + strand, within PagCFBP13505_RS08970 at 97.717 kb on + strand, within PagCFBP13505_RS08970 at 97.718 kb on - strand, within PagCFBP13505_RS08970 at 97.755 kb on + strand, within PagCFBP13505_RS08970 at 97.804 kb on - strand, within PagCFBP13505_RS08970 at 97.833 kb on - strand, within PagCFBP13505_RS08970 at 97.991 kb on + strand, within PagCFBP13505_RS08970 at 97.991 kb on + strand, within PagCFBP13505_RS08970 at 97.991 kb on + strand, within PagCFBP13505_RS08970 at 97.995 kb on + strand, within PagCFBP13505_RS08970 at 98.034 kb on + strand, within PagCFBP13505_RS08970 at 98.034 kb on + strand, within PagCFBP13505_RS08970 at 98.035 kb on - strand, within PagCFBP13505_RS08970 at 98.037 kb on - strand, within PagCFBP13505_RS08970 at 98.168 kb on + strand, within PagCFBP13505_RS08970 at 98.169 kb on - strand, within PagCFBP13505_RS08970 at 98.169 kb on - strand, within PagCFBP13505_RS08970 at 98.169 kb on - strand, within PagCFBP13505_RS08970 at 98.173 kb on + strand, within PagCFBP13505_RS08970 at 98.217 kb on - strand, within PagCFBP13505_RS08970 at 98.293 kb on - strand at 98.331 kb on + strand at 98.383 kb on + strand at 98.384 kb on - strand at 98.716 kb on + strand, within PagCFBP13505_RS08975 at 98.717 kb on - strand, within PagCFBP13505_RS08975 at 98.794 kb on + strand, within PagCFBP13505_RS08975 at 98.795 kb on - strand, within PagCFBP13505_RS08975 at 98.805 kb on + strand, within PagCFBP13505_RS08975 at 98.956 kb on - strand, within PagCFBP13505_RS08975 at 98.986 kb on + strand, within PagCFBP13505_RS08975 at 98.986 kb on + strand, within PagCFBP13505_RS08975 at 98.987 kb on - strand, within PagCFBP13505_RS08975 at 98.998 kb on + strand, within PagCFBP13505_RS08975 at 98.999 kb on - strand, within PagCFBP13505_RS08975 at 98.999 kb on - strand, within PagCFBP13505_RS08975 at 98.999 kb on - strand, within PagCFBP13505_RS08975 at 98.999 kb on - strand, within PagCFBP13505_RS08975 at 98.999 kb on - strand, within PagCFBP13505_RS08975 at 99.047 kb on - strand, within PagCFBP13505_RS08975 at 99.047 kb on - strand, within PagCFBP13505_RS08975 at 99.132 kb on - strand, within PagCFBP13505_RS08975 at 99.132 kb on - strand, within PagCFBP13505_RS08975 at 99.139 kb on + strand, within PagCFBP13505_RS08975 at 99.164 kb on - strand, within PagCFBP13505_RS08975 at 99.267 kb on - strand, within PagCFBP13505_RS08975 at 99.332 kb on + strand, within PagCFBP13505_RS08975 at 99.333 kb on - strand, within PagCFBP13505_RS08975 at 99.342 kb on + strand, within PagCFBP13505_RS08975 at 99.342 kb on + strand, within PagCFBP13505_RS08975
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 96,216 - PagCFBP13505_RS08960 0.13 -1.8 96,384 + PagCFBP13505_RS08960 0.49 -0.8 96,420 + PagCFBP13505_RS08960 0.57 +0.2 96,420 + PagCFBP13505_RS08960 0.57 -0.3 96,428 - PagCFBP13505_RS08960 0.58 -0.3 96,428 - PagCFBP13505_RS08960 0.58 +0.7 96,574 - -0.7 96,618 + +0.1 96,637 + -0.8 96,638 - -0.2 96,638 - +0.7 96,639 + -0.6 96,639 + +0.0 96,639 + -0.0 96,640 - +0.8 96,677 - -0.6 96,742 - PagCFBP13505_RS08965 0.13 -3.6 96,934 + PagCFBP13505_RS08965 0.62 -1.8 96,934 + PagCFBP13505_RS08965 0.62 -3.4 96,935 - PagCFBP13505_RS08965 0.63 -2.5 96,963 + PagCFBP13505_RS08965 0.70 -3.5 96,963 + PagCFBP13505_RS08965 0.70 -1.3 97,077 + -1.8 97,090 + -1.4 97,097 + -0.3 97,097 + -1.4 97,097 + +0.5 97,097 + -0.2 97,098 - -0.5 97,098 - -2.1 97,266 + -0.9 97,268 + -1.1 97,329 + PagCFBP13505_RS08970 0.15 -0.3 97,330 - PagCFBP13505_RS08970 0.15 -0.1 97,427 + PagCFBP13505_RS08970 0.23 +0.6 97,484 - PagCFBP13505_RS08970 0.28 -1.4 97,497 + PagCFBP13505_RS08970 0.29 -0.5 97,498 - PagCFBP13505_RS08970 0.29 -0.4 97,551 + PagCFBP13505_RS08970 0.33 -1.1 97,717 + PagCFBP13505_RS08970 0.47 -0.9 97,718 - PagCFBP13505_RS08970 0.47 -1.6 97,755 + PagCFBP13505_RS08970 0.50 -1.4 97,804 - PagCFBP13505_RS08970 0.54 +1.6 97,833 - PagCFBP13505_RS08970 0.57 -2.1 97,991 + PagCFBP13505_RS08970 0.70 -0.7 97,991 + PagCFBP13505_RS08970 0.70 -1.6 97,991 + PagCFBP13505_RS08970 0.70 -0.8 97,995 + PagCFBP13505_RS08970 0.70 -2.8 98,034 + PagCFBP13505_RS08970 0.74 -2.0 98,034 + PagCFBP13505_RS08970 0.74 -0.6 98,035 - PagCFBP13505_RS08970 0.74 -1.2 98,037 - PagCFBP13505_RS08970 0.74 -0.7 98,168 + PagCFBP13505_RS08970 0.85 -2.6 98,169 - PagCFBP13505_RS08970 0.85 -0.0 98,169 - PagCFBP13505_RS08970 0.85 -0.7 98,169 - PagCFBP13505_RS08970 0.85 -1.1 98,173 + PagCFBP13505_RS08970 0.85 -1.1 98,217 - PagCFBP13505_RS08970 0.89 -0.4 98,293 - +0.5 98,331 + -2.8 98,383 + +0.1 98,384 - -0.4 98,716 + PagCFBP13505_RS08975 0.17 -0.7 98,717 - PagCFBP13505_RS08975 0.17 +1.1 98,794 + PagCFBP13505_RS08975 0.21 -0.2 98,795 - PagCFBP13505_RS08975 0.21 +0.3 98,805 + PagCFBP13505_RS08975 0.21 +0.3 98,956 - PagCFBP13505_RS08975 0.28 +0.1 98,986 + PagCFBP13505_RS08975 0.30 -0.6 98,986 + PagCFBP13505_RS08975 0.30 -1.6 98,987 - PagCFBP13505_RS08975 0.30 +0.6 98,998 + PagCFBP13505_RS08975 0.30 +0.5 98,999 - PagCFBP13505_RS08975 0.30 -2.4 98,999 - PagCFBP13505_RS08975 0.30 +0.4 98,999 - PagCFBP13505_RS08975 0.30 -1.8 98,999 - PagCFBP13505_RS08975 0.30 +1.5 98,999 - PagCFBP13505_RS08975 0.30 -0.8 99,047 - PagCFBP13505_RS08975 0.33 +0.6 99,047 - PagCFBP13505_RS08975 0.33 -0.3 99,132 - PagCFBP13505_RS08975 0.37 -0.4 99,132 - PagCFBP13505_RS08975 0.37 +1.0 99,139 + PagCFBP13505_RS08975 0.37 -0.5 99,164 - PagCFBP13505_RS08975 0.38 +1.2 99,267 - PagCFBP13505_RS08975 0.43 +0.5 99,332 + PagCFBP13505_RS08975 0.46 -0.9 99,333 - PagCFBP13505_RS08975 0.46 +0.5 99,342 + PagCFBP13505_RS08975 0.46 +0.6 99,342 + PagCFBP13505_RS08975 0.46 -0.1
Or see this region's nucleotide sequence