Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06980 and MPMX19_06981 are separated by 19 nucleotides MPMX19_06981 and MPMX19_06982 are separated by 65 nucleotides
MPMX19_06980: MPMX19_06980 - hypothetical protein, at 260,403 to 262,355
_06980
MPMX19_06981: MPMX19_06981 - hypothetical protein, at 262,375 to 263,358
_06981
MPMX19_06982: MPMX19_06982 - Aldehyde dehydrogenase, thermostable, at 263,424 to 264,878
_06982
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2 at 261.516 kb on + strand, within MPMX19_06980 at 261.516 kb on + strand, within MPMX19_06980 at 261.516 kb on + strand, within MPMX19_06980 at 261.516 kb on + strand, within MPMX19_06980 at 261.517 kb on - strand, within MPMX19_06980 at 261.517 kb on - strand, within MPMX19_06980 at 261.754 kb on - strand, within MPMX19_06980 at 261.754 kb on - strand, within MPMX19_06980 at 261.825 kb on + strand, within MPMX19_06980 at 261.825 kb on + strand, within MPMX19_06980 at 261.825 kb on + strand, within MPMX19_06980 at 261.825 kb on + strand, within MPMX19_06980 at 261.826 kb on - strand, within MPMX19_06980 at 262.117 kb on - strand, within MPMX19_06980 at 262.117 kb on - strand, within MPMX19_06980 at 262.170 kb on + strand at 262.170 kb on + strand at 262.171 kb on - strand at 262.171 kb on - strand at 262.251 kb on + strand at 262.251 kb on + strand at 262.252 kb on - strand at 262.252 kb on - strand at 262.252 kb on - strand at 262.252 kb on - strand at 262.391 kb on + strand at 262.426 kb on + strand at 262.426 kb on + strand at 262.426 kb on + strand at 262.427 kb on - strand at 262.427 kb on - strand at 262.427 kb on - strand at 262.699 kb on + strand, within MPMX19_06981 at 262.699 kb on + strand, within MPMX19_06981 at 262.699 kb on + strand, within MPMX19_06981 at 262.699 kb on + strand, within MPMX19_06981 at 262.699 kb on + strand, within MPMX19_06981 at 262.699 kb on + strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 263.536 kb on - strand at 263.536 kb on - strand at 263.536 kb on - strand at 264.261 kb on + strand, within MPMX19_06982 at 264.261 kb on + strand, within MPMX19_06982 at 264.261 kb on + strand, within MPMX19_06982 at 264.261 kb on + strand, within MPMX19_06982 at 264.262 kb on - strand, within MPMX19_06982
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 261,516 + MPMX19_06980 0.57 -1.6 261,516 + MPMX19_06980 0.57 +0.5 261,516 + MPMX19_06980 0.57 -0.3 261,516 + MPMX19_06980 0.57 -0.5 261,517 - MPMX19_06980 0.57 +0.8 261,517 - MPMX19_06980 0.57 -0.7 261,754 - MPMX19_06980 0.69 -0.3 261,754 - MPMX19_06980 0.69 +0.0 261,825 + MPMX19_06980 0.73 -1.4 261,825 + MPMX19_06980 0.73 +0.4 261,825 + MPMX19_06980 0.73 -0.0 261,825 + MPMX19_06980 0.73 -0.8 261,826 - MPMX19_06980 0.73 +1.0 262,117 - MPMX19_06980 0.88 +0.2 262,117 - MPMX19_06980 0.88 -0.8 262,170 + +0.1 262,170 + -1.4 262,171 - +1.2 262,171 - -0.7 262,251 + -0.4 262,251 + -0.3 262,252 - -0.0 262,252 - -1.1 262,252 - -0.6 262,252 - +2.4 262,391 + +0.4 262,426 + +0.2 262,426 + -0.4 262,426 + -0.6 262,427 - -1.4 262,427 - -0.6 262,427 - -1.1 262,699 + MPMX19_06981 0.33 -0.7 262,699 + MPMX19_06981 0.33 -1.2 262,699 + MPMX19_06981 0.33 +0.3 262,699 + MPMX19_06981 0.33 -0.2 262,699 + MPMX19_06981 0.33 +1.7 262,699 + MPMX19_06981 0.33 -0.1 262,700 - MPMX19_06981 0.33 +0.9 262,700 - MPMX19_06981 0.33 -0.2 262,700 - MPMX19_06981 0.33 -1.1 262,700 - MPMX19_06981 0.33 -1.4 262,700 - MPMX19_06981 0.33 +2.0 262,700 - MPMX19_06981 0.33 +0.3 262,700 - MPMX19_06981 0.33 -0.0 263,536 - +0.7 263,536 - -2.2 263,536 - +0.2 264,261 + MPMX19_06982 0.58 +1.2 264,261 + MPMX19_06982 0.58 -1.4 264,261 + MPMX19_06982 0.58 +0.7 264,261 + MPMX19_06982 0.58 -0.8 264,262 - MPMX19_06982 0.58 +0.5
Or see this region's nucleotide sequence