Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06901 and MPMX19_06902 overlap by 4 nucleotides MPMX19_06902 and MPMX19_06903 are separated by 87 nucleotides
MPMX19_06901: MPMX19_06901 - Alpha-ketoglutaric semialdehyde dehydrogenase, at 176,039 to 177,466
_06901
MPMX19_06902: MPMX19_06902 - hypothetical protein, at 177,463 to 177,624
_06902
MPMX19_06903: MPMX19_06903 - Acetolactate synthase isozyme 2 large subunit, at 177,712 to 179,409
_06903
Position (kb) 177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.475 kb on + strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.476 kb on - strand, within MPMX19_06901 at 176.880 kb on - strand, within MPMX19_06901 at 177.041 kb on - strand, within MPMX19_06901 at 177.041 kb on - strand, within MPMX19_06901 at 177.275 kb on - strand, within MPMX19_06901 at 177.372 kb on + strand at 177.372 kb on + strand at 177.372 kb on + strand at 177.372 kb on + strand at 177.372 kb on + strand at 177.372 kb on + strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.373 kb on - strand at 177.681 kb on + strand at 177.681 kb on + strand at 177.951 kb on - strand, within MPMX19_06903 at 178.026 kb on - strand, within MPMX19_06903 at 178.026 kb on - strand, within MPMX19_06903 at 178.142 kb on + strand, within MPMX19_06903 at 178.337 kb on + strand, within MPMX19_06903 at 178.337 kb on + strand, within MPMX19_06903 at 178.338 kb on - strand, within MPMX19_06903 at 178.467 kb on - strand, within MPMX19_06903 at 178.544 kb on + strand, within MPMX19_06903
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 176,475 + MPMX19_06901 0.31 +1.3 176,475 + MPMX19_06901 0.31 +0.6 176,475 + MPMX19_06901 0.31 -0.4 176,475 + MPMX19_06901 0.31 +0.3 176,475 + MPMX19_06901 0.31 -1.2 176,475 + MPMX19_06901 0.31 -1.3 176,475 + MPMX19_06901 0.31 +0.3 176,475 + MPMX19_06901 0.31 -1.7 176,476 - MPMX19_06901 0.31 +0.9 176,476 - MPMX19_06901 0.31 -0.2 176,476 - MPMX19_06901 0.31 -3.4 176,476 - MPMX19_06901 0.31 -0.7 176,476 - MPMX19_06901 0.31 +0.4 176,476 - MPMX19_06901 0.31 +0.2 176,880 - MPMX19_06901 0.59 +0.2 177,041 - MPMX19_06901 0.70 +0.5 177,041 - MPMX19_06901 0.70 -0.1 177,275 - MPMX19_06901 0.87 +0.4 177,372 + +0.7 177,372 + +0.0 177,372 + -0.7 177,372 + +0.7 177,372 + -0.3 177,372 + +0.0 177,373 - -0.2 177,373 - -0.4 177,373 - -1.0 177,373 - -0.6 177,373 - -0.0 177,373 - -1.3 177,373 - -2.4 177,681 + -0.5 177,681 + -1.8 177,951 - MPMX19_06903 0.14 +0.5 178,026 - MPMX19_06903 0.18 -1.6 178,026 - MPMX19_06903 0.18 +0.4 178,142 + MPMX19_06903 0.25 -0.6 178,337 + MPMX19_06903 0.37 -0.4 178,337 + MPMX19_06903 0.37 +1.0 178,338 - MPMX19_06903 0.37 -1.0 178,467 - MPMX19_06903 0.44 -0.1 178,544 + MPMX19_06903 0.49 +0.7
Or see this region's nucleotide sequence