Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06867 and MPMX19_06868 are separated by 111 nucleotides MPMX19_06868 and MPMX19_06869 are separated by 247 nucleotides MPMX19_06869 and MPMX19_06870 are separated by 82 nucleotides
MPMX19_06867: MPMX19_06867 - Sialic acid transporter NanT, at 136,331 to 137,689
_06867
MPMX19_06868: MPMX19_06868 - hypothetical protein, at 137,801 to 139,618
_06868
MPMX19_06869: MPMX19_06869 - NADH:FAD oxidoreductase, at 139,866 to 140,396
_06869
MPMX19_06870: MPMX19_06870 - Riboflavin biosynthesis protein RibBA, at 140,479 to 141,606
_06870
Position (kb) 137
138
139
140 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 136.944 kb on + strand, within MPMX19_06867 at 136.944 kb on + strand, within MPMX19_06867 at 136.944 kb on + strand, within MPMX19_06867 at 136.945 kb on - strand, within MPMX19_06867 at 136.977 kb on + strand, within MPMX19_06867 at 136.978 kb on + strand, within MPMX19_06867 at 136.978 kb on + strand, within MPMX19_06867 at 136.979 kb on - strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 137.262 kb on + strand, within MPMX19_06867 at 137.466 kb on + strand, within MPMX19_06867 at 137.467 kb on - strand, within MPMX19_06867 at 137.467 kb on - strand, within MPMX19_06867 at 137.467 kb on - strand, within MPMX19_06867 at 137.586 kb on + strand at 137.586 kb on + strand at 137.586 kb on + strand at 137.586 kb on + strand at 137.586 kb on + strand at 137.586 kb on + strand at 137.586 kb on + strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.613 kb on + strand at 137.614 kb on - strand at 137.689 kb on + strand at 137.689 kb on + strand at 137.784 kb on + strand at 137.784 kb on + strand at 137.785 kb on - strand at 137.785 kb on - strand at 137.785 kb on - strand at 137.856 kb on + strand at 137.880 kb on + strand at 137.880 kb on + strand at 137.881 kb on - strand at 137.881 kb on - strand at 137.881 kb on - strand at 137.881 kb on - strand at 137.898 kb on + strand at 137.898 kb on + strand at 137.898 kb on + strand at 137.898 kb on + strand at 137.898 kb on + strand at 137.898 kb on + strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.967 kb on + strand at 137.968 kb on - strand at 137.968 kb on - strand at 137.968 kb on - strand at 137.968 kb on - strand at 138.039 kb on + strand, within MPMX19_06868 at 138.063 kb on + strand, within MPMX19_06868 at 138.174 kb on + strand, within MPMX19_06868 at 138.174 kb on + strand, within MPMX19_06868 at 138.175 kb on - strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.430 kb on + strand, within MPMX19_06868 at 138.431 kb on - strand, within MPMX19_06868 at 138.431 kb on - strand, within MPMX19_06868 at 138.431 kb on - strand, within MPMX19_06868 at 138.516 kb on + strand, within MPMX19_06868 at 138.517 kb on - strand, within MPMX19_06868 at 138.517 kb on - strand, within MPMX19_06868 at 138.604 kb on - strand, within MPMX19_06868 at 138.669 kb on + strand, within MPMX19_06868 at 138.670 kb on - strand, within MPMX19_06868 at 138.670 kb on - strand, within MPMX19_06868 at 138.670 kb on - strand, within MPMX19_06868 at 138.807 kb on + strand, within MPMX19_06868 at 138.870 kb on + strand, within MPMX19_06868 at 138.871 kb on - strand, within MPMX19_06868 at 139.101 kb on + strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.176 kb on + strand, within MPMX19_06868 at 139.176 kb on + strand, within MPMX19_06868 at 139.177 kb on - strand, within MPMX19_06868 at 139.230 kb on + strand, within MPMX19_06868 at 139.230 kb on + strand, within MPMX19_06868 at 139.231 kb on - strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.333 kb on - strand, within MPMX19_06868 at 139.333 kb on - strand, within MPMX19_06868 at 139.562 kb on + strand at 139.562 kb on + strand at 139.607 kb on + strand at 139.607 kb on + strand at 139.608 kb on - strand at 139.608 kb on - strand at 139.608 kb on - strand at 139.608 kb on - strand at 139.845 kb on + strand at 139.845 kb on + strand at 139.846 kb on - strand at 139.846 kb on - strand at 139.867 kb on + strand at 139.868 kb on - strand at 139.868 kb on - strand at 139.976 kb on + strand, within MPMX19_06869 at 140.379 kb on + strand at 140.379 kb on + strand at 140.380 kb on - strand at 140.380 kb on - strand at 140.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 136,944 + MPMX19_06867 0.45 -0.5 136,944 + MPMX19_06867 0.45 -0.5 136,944 + MPMX19_06867 0.45 -0.5 136,945 - MPMX19_06867 0.45 +0.2 136,977 + MPMX19_06867 0.48 +0.7 136,978 + MPMX19_06867 0.48 -0.1 136,978 + MPMX19_06867 0.48 +0.5 136,979 - MPMX19_06867 0.48 -1.5 136,989 + MPMX19_06867 0.48 +1.6 136,989 + MPMX19_06867 0.48 -0.8 136,989 + MPMX19_06867 0.48 +0.7 136,989 + MPMX19_06867 0.48 -0.3 136,989 + MPMX19_06867 0.48 +1.3 136,989 + MPMX19_06867 0.48 -0.5 136,989 + MPMX19_06867 0.48 +0.3 136,989 + MPMX19_06867 0.48 +2.0 136,989 + MPMX19_06867 0.48 -0.0 136,989 + MPMX19_06867 0.48 -1.0 136,989 + MPMX19_06867 0.48 -0.7 136,990 - MPMX19_06867 0.48 -0.1 136,990 - MPMX19_06867 0.48 -0.1 136,990 - MPMX19_06867 0.48 -2.6 136,990 - MPMX19_06867 0.48 -0.5 136,990 - MPMX19_06867 0.48 -1.0 136,990 - MPMX19_06867 0.48 -0.2 136,990 - MPMX19_06867 0.48 -0.3 136,990 - MPMX19_06867 0.48 -1.4 136,990 - MPMX19_06867 0.48 -0.3 137,262 + MPMX19_06867 0.69 -0.0 137,466 + MPMX19_06867 0.84 -0.0 137,467 - MPMX19_06867 0.84 -0.7 137,467 - MPMX19_06867 0.84 +0.2 137,467 - MPMX19_06867 0.84 -0.0 137,586 + +0.4 137,586 + +0.2 137,586 + -0.0 137,586 + -0.4 137,586 + -2.0 137,586 + -2.8 137,586 + -0.6 137,587 - -0.3 137,587 - +0.0 137,587 - +1.2 137,587 - -0.1 137,587 - -2.9 137,587 - +0.6 137,587 - -0.4 137,587 - +1.6 137,587 - -1.2 137,587 - -0.2 137,587 - +0.7 137,613 + -2.1 137,614 - +0.2 137,689 + -1.1 137,689 + +0.7 137,784 + +0.7 137,784 + -0.1 137,785 - -1.2 137,785 - +0.3 137,785 - -0.3 137,856 + +1.0 137,880 + -0.1 137,880 + -0.6 137,881 - -0.3 137,881 - +0.7 137,881 - +0.2 137,881 - +0.2 137,898 + -0.8 137,898 + -0.4 137,898 + -0.8 137,898 + +0.7 137,898 + +0.4 137,898 + -0.5 137,899 - -0.6 137,899 - -1.2 137,899 - -0.8 137,899 - +1.2 137,899 - -0.0 137,899 - +1.5 137,899 - -0.1 137,899 - -0.8 137,967 + +0.7 137,968 - -1.1 137,968 - -1.1 137,968 - -1.0 137,968 - +0.2 138,039 + MPMX19_06868 0.13 -1.7 138,063 + MPMX19_06868 0.14 -1.5 138,174 + MPMX19_06868 0.21 -2.6 138,174 + MPMX19_06868 0.21 -2.7 138,175 - MPMX19_06868 0.21 -0.1 138,210 + MPMX19_06868 0.22 -1.1 138,210 + MPMX19_06868 0.22 +0.9 138,210 + MPMX19_06868 0.22 +0.6 138,210 + MPMX19_06868 0.22 -0.1 138,210 + MPMX19_06868 0.22 +0.3 138,210 + MPMX19_06868 0.22 -0.8 138,210 + MPMX19_06868 0.22 +0.3 138,210 + MPMX19_06868 0.22 -0.1 138,211 - MPMX19_06868 0.23 +0.2 138,211 - MPMX19_06868 0.23 -0.8 138,211 - MPMX19_06868 0.23 -1.8 138,211 - MPMX19_06868 0.23 -1.3 138,211 - MPMX19_06868 0.23 -0.9 138,211 - MPMX19_06868 0.23 -0.4 138,211 - MPMX19_06868 0.23 -1.4 138,211 - MPMX19_06868 0.23 -0.7 138,430 + MPMX19_06868 0.35 -0.3 138,431 - MPMX19_06868 0.35 -1.4 138,431 - MPMX19_06868 0.35 +1.2 138,431 - MPMX19_06868 0.35 -1.2 138,516 + MPMX19_06868 0.39 -0.1 138,517 - MPMX19_06868 0.39 -0.5 138,517 - MPMX19_06868 0.39 -0.6 138,604 - MPMX19_06868 0.44 -1.0 138,669 + MPMX19_06868 0.48 -0.1 138,670 - MPMX19_06868 0.48 -1.1 138,670 - MPMX19_06868 0.48 -0.1 138,670 - MPMX19_06868 0.48 -0.1 138,807 + MPMX19_06868 0.55 -0.6 138,870 + MPMX19_06868 0.59 -0.8 138,871 - MPMX19_06868 0.59 -2.0 139,101 + MPMX19_06868 0.72 +1.2 139,102 - MPMX19_06868 0.72 +0.4 139,102 - MPMX19_06868 0.72 -0.8 139,102 - MPMX19_06868 0.72 -0.6 139,102 - MPMX19_06868 0.72 -1.0 139,102 - MPMX19_06868 0.72 -0.8 139,102 - MPMX19_06868 0.72 -0.3 139,176 + MPMX19_06868 0.76 -0.5 139,176 + MPMX19_06868 0.76 -1.1 139,177 - MPMX19_06868 0.76 -1.3 139,230 + MPMX19_06868 0.79 +0.6 139,230 + MPMX19_06868 0.79 -0.3 139,231 - MPMX19_06868 0.79 -0.4 139,332 + MPMX19_06868 0.84 -1.2 139,332 + MPMX19_06868 0.84 -2.0 139,332 + MPMX19_06868 0.84 -1.4 139,332 + MPMX19_06868 0.84 +0.4 139,332 + MPMX19_06868 0.84 +0.5 139,332 + MPMX19_06868 0.84 -0.4 139,333 - MPMX19_06868 0.84 -0.4 139,333 - MPMX19_06868 0.84 -1.7 139,562 + +1.2 139,562 + -0.1 139,607 + -0.3 139,607 + -0.5 139,608 - +0.3 139,608 - -0.7 139,608 - -0.5 139,608 - -0.1 139,845 + -0.0 139,845 + +1.3 139,846 - +0.7 139,846 - -0.9 139,867 + -0.8 139,868 - +1.3 139,868 - -0.3 139,976 + MPMX19_06869 0.21 -0.4 140,379 + +0.2 140,379 + +1.3 140,380 - +1.0 140,380 - +0.6 140,532 - +0.8
Or see this region's nucleotide sequence