Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06691

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06689 and MPMX19_06690 are separated by 84 nucleotidesMPMX19_06690 and MPMX19_06691 are separated by 16 nucleotidesMPMX19_06691 and MPMX19_06692 are separated by 261 nucleotides MPMX19_06689: MPMX19_06689 - hypothetical protein, at 260,234 to 260,575 _06689 MPMX19_06690: MPMX19_06690 - hypothetical protein, at 260,660 to 261,181 _06690 MPMX19_06691: MPMX19_06691 - hypothetical protein, at 261,198 to 261,572 _06691 MPMX19_06692: MPMX19_06692 - hypothetical protein, at 261,834 to 263,531 _06692 Position (kb) 261 262Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 260.215 kb on + strandat 260.216 kb on - strandat 260.216 kb on - strandat 260.718 kb on + strand, within MPMX19_06690at 260.719 kb on - strand, within MPMX19_06690at 260.739 kb on + strand, within MPMX19_06690at 260.739 kb on + strand, within MPMX19_06690at 260.739 kb on + strand, within MPMX19_06690at 260.739 kb on + strand, within MPMX19_06690at 260.740 kb on - strand, within MPMX19_06690at 260.740 kb on - strand, within MPMX19_06690at 260.740 kb on - strand, within MPMX19_06690at 260.740 kb on - strand, within MPMX19_06690at 260.763 kb on + strand, within MPMX19_06690at 260.763 kb on + strand, within MPMX19_06690at 260.768 kb on + strand, within MPMX19_06690at 261.069 kb on + strand, within MPMX19_06690at 261.069 kb on + strand, within MPMX19_06690at 261.069 kb on + strand, within MPMX19_06690at 261.069 kb on + strand, within MPMX19_06690at 261.069 kb on + strand, within MPMX19_06690at 261.069 kb on + strand, within MPMX19_06690at 261.069 kb on + strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.070 kb on - strand, within MPMX19_06690at 261.185 kb on + strandat 261.185 kb on + strandat 261.186 kb on - strandat 261.186 kb on - strandat 261.186 kb on - strandat 261.186 kb on - strandat 261.186 kb on - strandat 261.186 kb on - strandat 261.187 kb on + strandat 261.187 kb on + strandat 261.187 kb on + strandat 261.187 kb on + strandat 261.187 kb on + strandat 261.187 kb on + strandat 261.188 kb on - strandat 261.188 kb on - strandat 261.188 kb on - strandat 261.188 kb on - strandat 261.188 kb on - strandat 261.196 kb on - strandat 261.196 kb on - strandat 261.223 kb on + strandat 261.223 kb on + strandat 261.223 kb on + strandat 261.223 kb on + strandat 261.224 kb on - strandat 261.224 kb on - strandat 261.224 kb on - strandat 261.224 kb on - strandat 261.379 kb on + strand, within MPMX19_06691at 261.379 kb on + strand, within MPMX19_06691at 261.380 kb on - strand, within MPMX19_06691at 261.380 kb on - strand, within MPMX19_06691at 261.380 kb on - strand, within MPMX19_06691at 261.433 kb on + strand, within MPMX19_06691at 261.433 kb on + strand, within MPMX19_06691at 261.433 kb on + strand, within MPMX19_06691at 261.434 kb on - strand, within MPMX19_06691at 261.434 kb on - strand, within MPMX19_06691at 261.661 kb on + strandat 261.683 kb on - strandat 261.683 kb on - strandat 261.687 kb on + strandat 261.687 kb on + strandat 261.687 kb on + strandat 261.687 kb on + strandat 261.707 kb on + strandat 261.708 kb on - strandat 261.708 kb on - strandat 261.708 kb on - strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.877 kb on + strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 261.878 kb on - strandat 262.211 kb on + strand, within MPMX19_06692at 262.211 kb on + strand, within MPMX19_06692at 262.211 kb on + strand, within MPMX19_06692at 262.212 kb on - strand, within MPMX19_06692at 262.212 kb on - strand, within MPMX19_06692at 262.212 kb on - strand, within MPMX19_06692at 262.212 kb on - strand, within MPMX19_06692at 262.212 kb on - strand, within MPMX19_06692at 262.212 kb on - strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.213 kb on + strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692at 262.214 kb on - strand, within MPMX19_06692

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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260,215 + -1.0
260,216 - +0.1
260,216 - +0.5
260,718 + MPMX19_06690 0.11 -0.4
260,719 - MPMX19_06690 0.11 -2.1
260,739 + MPMX19_06690 0.15 -0.5
260,739 + MPMX19_06690 0.15 -0.3
260,739 + MPMX19_06690 0.15 +0.6
260,739 + MPMX19_06690 0.15 -0.5
260,740 - MPMX19_06690 0.15 +0.1
260,740 - MPMX19_06690 0.15 -0.2
260,740 - MPMX19_06690 0.15 -1.2
260,740 - MPMX19_06690 0.15 -2.6
260,763 + MPMX19_06690 0.20 -0.7
260,763 + MPMX19_06690 0.20 -0.2
260,768 + MPMX19_06690 0.21 +2.8
261,069 + MPMX19_06690 0.78 +0.5
261,069 + MPMX19_06690 0.78 -0.2
261,069 + MPMX19_06690 0.78 -0.6
261,069 + MPMX19_06690 0.78 -1.3
261,069 + MPMX19_06690 0.78 -0.4
261,069 + MPMX19_06690 0.78 +0.4
261,069 + MPMX19_06690 0.78 +0.1
261,070 - MPMX19_06690 0.79 -0.3
261,070 - MPMX19_06690 0.79 -1.3
261,070 - MPMX19_06690 0.79 +0.3
261,070 - MPMX19_06690 0.79 +1.3
261,070 - MPMX19_06690 0.79 -0.5
261,070 - MPMX19_06690 0.79 -0.4
261,070 - MPMX19_06690 0.79 +0.4
261,070 - MPMX19_06690 0.79 +1.0
261,070 - MPMX19_06690 0.79 -1.0
261,070 - MPMX19_06690 0.79 +0.1
261,070 - MPMX19_06690 0.79 -1.2
261,070 - MPMX19_06690 0.79 +0.1
261,070 - MPMX19_06690 0.79 +0.1
261,185 + -0.9
261,185 + -0.4
261,186 - -0.4
261,186 - -2.2
261,186 - +0.3
261,186 - +0.9
261,186 - -0.6
261,186 - -1.2
261,187 + -0.3
261,187 + -0.4
261,187 + +0.4
261,187 + -0.2
261,187 + +1.5
261,187 + +1.4
261,188 - -1.6
261,188 - +0.3
261,188 - +0.2
261,188 - -0.6
261,188 - -1.2
261,196 - -1.0
261,196 - -0.9
261,223 + +0.2
261,223 + -1.6
261,223 + -0.5
261,223 + -0.2
261,224 - -0.2
261,224 - -0.4
261,224 - +0.3
261,224 - -1.2
261,379 + MPMX19_06691 0.48 -1.0
261,379 + MPMX19_06691 0.48 -0.7
261,380 - MPMX19_06691 0.49 +0.6
261,380 - MPMX19_06691 0.49 -0.5
261,380 - MPMX19_06691 0.49 -0.4
261,433 + MPMX19_06691 0.63 +0.7
261,433 + MPMX19_06691 0.63 +1.3
261,433 + MPMX19_06691 0.63 +1.4
261,434 - MPMX19_06691 0.63 -2.4
261,434 - MPMX19_06691 0.63 -0.1
261,661 + +1.1
261,683 - -0.9
261,683 - -0.3
261,687 + -0.7
261,687 + +0.2
261,687 + +0.7
261,687 + -1.1
261,707 + -1.2
261,708 - +0.4
261,708 - -0.4
261,708 - -0.0
261,877 + -2.8
261,877 + -1.4
261,877 + -2.1
261,877 + +0.1
261,877 + +0.7
261,877 + -0.4
261,877 + +0.1
261,877 + -1.0
261,877 + -0.0
261,877 + -0.7
261,877 + +0.3
261,877 + -0.6
261,877 + -0.9
261,877 + -0.7
261,877 + +0.5
261,878 - -0.3
261,878 - +0.3
261,878 - +0.8
261,878 - +0.1
261,878 - -0.6
261,878 - -2.0
261,878 - +0.6
261,878 - -2.2
261,878 - -0.3
261,878 - +0.6
261,878 - +0.3
261,878 - +2.4
261,878 - +0.0
261,878 - -0.4
262,211 + MPMX19_06692 0.22 -0.0
262,211 + MPMX19_06692 0.22 +0.1
262,211 + MPMX19_06692 0.22 -1.6
262,212 - MPMX19_06692 0.22 -0.5
262,212 - MPMX19_06692 0.22 +0.7
262,212 - MPMX19_06692 0.22 +0.4
262,212 - MPMX19_06692 0.22 -1.5
262,212 - MPMX19_06692 0.22 +1.0
262,212 - MPMX19_06692 0.22 +0.1
262,213 + MPMX19_06692 0.22 -0.2
262,213 + MPMX19_06692 0.22 -0.1
262,213 + MPMX19_06692 0.22 -0.2
262,213 + MPMX19_06692 0.22 +0.5
262,213 + MPMX19_06692 0.22 +0.3
262,213 + MPMX19_06692 0.22 -1.9
262,213 + MPMX19_06692 0.22 -0.5
262,213 + MPMX19_06692 0.22 +0.1
262,213 + MPMX19_06692 0.22 +0.8
262,213 + MPMX19_06692 0.22 -0.7
262,213 + MPMX19_06692 0.22 -0.2
262,213 + MPMX19_06692 0.22 -0.2
262,213 + MPMX19_06692 0.22 -0.3
262,213 + MPMX19_06692 0.22 -0.1
262,213 + MPMX19_06692 0.22 +0.6
262,213 + MPMX19_06692 0.22 +0.3
262,214 - MPMX19_06692 0.22 -0.5
262,214 - MPMX19_06692 0.22 -1.4
262,214 - MPMX19_06692 0.22 -0.7
262,214 - MPMX19_06692 0.22 -1.2
262,214 - MPMX19_06692 0.22 -0.6
262,214 - MPMX19_06692 0.22 +0.6
262,214 - MPMX19_06692 0.22 -1.7
262,214 - MPMX19_06692 0.22 -1.5
262,214 - MPMX19_06692 0.22 +0.8
262,214 - MPMX19_06692 0.22 -0.5
262,214 - MPMX19_06692 0.22 +0.3
262,214 - MPMX19_06692 0.22 -0.1
262,214 - MPMX19_06692 0.22 +0.7
262,214 - MPMX19_06692 0.22 -0.5
262,214 - MPMX19_06692 0.22 +0.3
262,214 - MPMX19_06692 0.22 -0.3
262,214 - MPMX19_06692 0.22 +0.5
262,214 - MPMX19_06692 0.22 -1.2
262,214 - MPMX19_06692 0.22 +0.7
262,214 - MPMX19_06692 0.22 -0.0

Or see this region's nucleotide sequence