Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06491 and MPMX19_06492 are separated by 223 nucleotides MPMX19_06492 and MPMX19_06493 are separated by 125 nucleotides MPMX19_06493 and MPMX19_06494 are separated by 136 nucleotides
MPMX19_06491: MPMX19_06491 - Alpha-ketoglutarate-dependent taurine dioxygenase, at 274,189 to 275,040
_06491
MPMX19_06492: MPMX19_06492 - IS5 family transposase ISAzs10, at 275,264 to 276,343
_06492
MPMX19_06493: MPMX19_06493 - hypothetical protein, at 276,469 to 276,648
_06493
MPMX19_06494: MPMX19_06494 - hypothetical protein, at 276,785 to 277,357
_06494
Position (kb) 275
276
277 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 274.603 kb on + strand, within MPMX19_06491 at 274.603 kb on + strand, within MPMX19_06491 at 274.603 kb on + strand, within MPMX19_06491 at 274.603 kb on + strand, within MPMX19_06491 at 274.603 kb on + strand, within MPMX19_06491 at 274.603 kb on + strand, within MPMX19_06491 at 274.604 kb on - strand, within MPMX19_06491 at 274.604 kb on - strand, within MPMX19_06491 at 274.604 kb on - strand, within MPMX19_06491 at 274.876 kb on + strand, within MPMX19_06491 at 274.876 kb on + strand, within MPMX19_06491 at 274.876 kb on + strand, within MPMX19_06491 at 274.877 kb on - strand, within MPMX19_06491 at 274.877 kb on - strand, within MPMX19_06491 at 274.884 kb on + strand, within MPMX19_06491 at 274.885 kb on - strand, within MPMX19_06491 at 274.885 kb on - strand, within MPMX19_06491 at 274.900 kb on + strand, within MPMX19_06491 at 274.900 kb on + strand, within MPMX19_06491 at 274.950 kb on + strand, within MPMX19_06491 at 274.950 kb on + strand, within MPMX19_06491 at 274.950 kb on + strand, within MPMX19_06491 at 274.950 kb on + strand, within MPMX19_06491 at 274.950 kb on + strand, within MPMX19_06491 at 274.951 kb on - strand, within MPMX19_06491 at 274.951 kb on - strand, within MPMX19_06491 at 274.951 kb on - strand, within MPMX19_06491 at 274.951 kb on - strand, within MPMX19_06491 at 274.982 kb on - strand at 275.001 kb on + strand at 275.001 kb on + strand at 275.001 kb on + strand at 275.001 kb on + strand at 275.001 kb on + strand at 275.001 kb on + strand at 275.002 kb on - strand at 275.036 kb on - strand at 275.072 kb on - strand at 275.103 kb on - strand at 275.184 kb on + strand at 275.184 kb on + strand at 275.306 kb on + strand at 275.306 kb on + strand at 275.306 kb on + strand at 275.306 kb on + strand at 275.307 kb on - strand at 275.307 kb on - strand at 275.307 kb on - strand at 275.307 kb on - strand at 275.307 kb on - strand at 275.307 kb on - strand at 275.307 kb on - strand at 275.412 kb on - strand, within MPMX19_06492 at 275.480 kb on + strand, within MPMX19_06492 at 275.480 kb on + strand, within MPMX19_06492 at 275.480 kb on + strand, within MPMX19_06492 at 275.480 kb on + strand, within MPMX19_06492 at 275.480 kb on + strand, within MPMX19_06492 at 275.480 kb on + strand, within MPMX19_06492 at 275.523 kb on - strand, within MPMX19_06492 at 275.523 kb on - strand, within MPMX19_06492 at 275.582 kb on - strand, within MPMX19_06492 at 275.582 kb on - strand, within MPMX19_06492 at 275.865 kb on - strand, within MPMX19_06492 at 276.053 kb on + strand, within MPMX19_06492 at 276.302 kb on + strand at 276.303 kb on - strand at 276.303 kb on - strand at 276.341 kb on + strand at 276.341 kb on + strand at 276.341 kb on + strand at 276.341 kb on + strand at 276.342 kb on - strand at 276.342 kb on - strand at 276.404 kb on + strand at 276.405 kb on - strand at 276.468 kb on + strand at 276.469 kb on - strand at 276.469 kb on - strand at 276.469 kb on - strand at 276.492 kb on + strand, within MPMX19_06493 at 276.492 kb on + strand, within MPMX19_06493 at 276.493 kb on - strand, within MPMX19_06493 at 276.493 kb on - strand, within MPMX19_06493 at 276.653 kb on + strand at 276.693 kb on + strand at 276.694 kb on - strand at 276.694 kb on - strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.777 kb on + strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.778 kb on - strand at 276.783 kb on + strand at 276.784 kb on - strand at 276.870 kb on - strand, within MPMX19_06494 at 276.870 kb on - strand, within MPMX19_06494 at 276.870 kb on - strand, within MPMX19_06494 at 276.913 kb on + strand, within MPMX19_06494 at 276.913 kb on + strand, within MPMX19_06494 at 276.914 kb on - strand, within MPMX19_06494 at 276.914 kb on - strand, within MPMX19_06494 at 276.914 kb on - strand, within MPMX19_06494 at 276.914 kb on - strand, within MPMX19_06494 at 276.914 kb on - strand, within MPMX19_06494 at 277.079 kb on + strand, within MPMX19_06494 at 277.079 kb on + strand, within MPMX19_06494 at 277.079 kb on + strand, within MPMX19_06494 at 277.079 kb on + strand, within MPMX19_06494 at 277.079 kb on + strand, within MPMX19_06494 at 277.079 kb on + strand, within MPMX19_06494 at 277.079 kb on + strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.080 kb on - strand, within MPMX19_06494 at 277.082 kb on + strand, within MPMX19_06494 at 277.082 kb on + strand, within MPMX19_06494 at 277.083 kb on - strand, within MPMX19_06494 at 277.083 kb on - strand, within MPMX19_06494 at 277.083 kb on - strand, within MPMX19_06494 at 277.083 kb on - strand, within MPMX19_06494 at 277.083 kb on - strand, within MPMX19_06494 at 277.118 kb on + strand, within MPMX19_06494 at 277.118 kb on + strand, within MPMX19_06494 at 277.118 kb on + strand, within MPMX19_06494 at 277.118 kb on + strand, within MPMX19_06494 at 277.118 kb on + strand, within MPMX19_06494 at 277.118 kb on + strand, within MPMX19_06494 at 277.118 kb on + strand, within MPMX19_06494 at 277.118 kb on + strand, within MPMX19_06494 at 277.119 kb on - strand, within MPMX19_06494 at 277.119 kb on - strand, within MPMX19_06494 at 277.119 kb on - strand, within MPMX19_06494 at 277.119 kb on - strand, within MPMX19_06494 at 277.119 kb on - strand, within MPMX19_06494 at 277.119 kb on - strand, within MPMX19_06494 at 277.119 kb on - strand, within MPMX19_06494 at 277.119 kb on - strand, within MPMX19_06494 at 277.189 kb on + strand, within MPMX19_06494 at 277.190 kb on - strand, within MPMX19_06494 at 277.203 kb on - strand, within MPMX19_06494 at 277.203 kb on - strand, within MPMX19_06494 at 277.203 kb on - strand, within MPMX19_06494 at 277.203 kb on - strand, within MPMX19_06494 at 277.314 kb on + strand at 277.314 kb on + strand at 277.314 kb on + strand at 277.314 kb on + strand at 277.315 kb on - strand at 277.315 kb on - strand at 277.325 kb on + strand at 277.325 kb on + strand at 277.325 kb on + strand at 277.325 kb on + strand at 277.325 kb on + strand at 277.325 kb on + strand at 277.326 kb on - strand at 277.326 kb on - strand at 277.326 kb on - strand at 277.326 kb on - strand at 277.326 kb on - strand at 277.326 kb on - strand at 277.326 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 274,603 + MPMX19_06491 0.49 +0.3 274,603 + MPMX19_06491 0.49 -2.3 274,603 + MPMX19_06491 0.49 -0.8 274,603 + MPMX19_06491 0.49 -1.6 274,603 + MPMX19_06491 0.49 -0.8 274,603 + MPMX19_06491 0.49 -0.0 274,604 - MPMX19_06491 0.49 +0.3 274,604 - MPMX19_06491 0.49 -1.0 274,604 - MPMX19_06491 0.49 -0.8 274,876 + MPMX19_06491 0.81 -1.3 274,876 + MPMX19_06491 0.81 +0.0 274,876 + MPMX19_06491 0.81 -0.3 274,877 - MPMX19_06491 0.81 -0.6 274,877 - MPMX19_06491 0.81 -0.8 274,884 + MPMX19_06491 0.82 -0.1 274,885 - MPMX19_06491 0.82 -1.7 274,885 - MPMX19_06491 0.82 -1.3 274,900 + MPMX19_06491 0.83 -0.5 274,900 + MPMX19_06491 0.83 -0.2 274,950 + MPMX19_06491 0.89 -1.2 274,950 + MPMX19_06491 0.89 +0.4 274,950 + MPMX19_06491 0.89 -1.5 274,950 + MPMX19_06491 0.89 -0.3 274,950 + MPMX19_06491 0.89 -2.3 274,951 - MPMX19_06491 0.89 -0.3 274,951 - MPMX19_06491 0.89 -0.9 274,951 - MPMX19_06491 0.89 -0.7 274,951 - MPMX19_06491 0.89 +0.3 274,982 - -3.0 275,001 + -2.0 275,001 + +1.0 275,001 + -1.6 275,001 + -0.8 275,001 + -0.6 275,001 + -1.4 275,002 - +0.0 275,036 - -0.7 275,072 - +0.8 275,103 - -0.2 275,184 + +0.2 275,184 + +0.9 275,306 + -0.3 275,306 + +0.3 275,306 + -1.4 275,306 + +0.4 275,307 - -0.5 275,307 - +0.5 275,307 - +0.7 275,307 - -0.6 275,307 - -0.5 275,307 - -1.3 275,307 - -1.1 275,412 - MPMX19_06492 0.14 -1.0 275,480 + MPMX19_06492 0.20 -0.1 275,480 + MPMX19_06492 0.20 -0.7 275,480 + MPMX19_06492 0.20 +0.8 275,480 + MPMX19_06492 0.20 -0.6 275,480 + MPMX19_06492 0.20 +0.3 275,480 + MPMX19_06492 0.20 -0.8 275,523 - MPMX19_06492 0.24 -2.4 275,523 - MPMX19_06492 0.24 -0.0 275,582 - MPMX19_06492 0.29 +0.2 275,582 - MPMX19_06492 0.29 +1.2 275,865 - MPMX19_06492 0.56 +0.0 276,053 + MPMX19_06492 0.73 -0.5 276,302 + -0.6 276,303 - -0.6 276,303 - -0.1 276,341 + -0.3 276,341 + -0.9 276,341 + -0.4 276,341 + -1.4 276,342 - -0.1 276,342 - +0.4 276,404 + +0.0 276,405 - -0.2 276,468 + -1.1 276,469 - -0.4 276,469 - +0.0 276,469 - +0.4 276,492 + MPMX19_06493 0.13 -0.6 276,492 + MPMX19_06493 0.13 -0.1 276,493 - MPMX19_06493 0.13 -0.7 276,493 - MPMX19_06493 0.13 -1.4 276,653 + -0.1 276,693 + -1.3 276,694 - +1.4 276,694 - -0.3 276,777 + -0.8 276,777 + +0.4 276,777 + +0.7 276,777 + -0.7 276,777 + -0.7 276,777 + -1.0 276,777 + -0.4 276,777 + -1.3 276,777 + -1.3 276,777 + +0.4 276,777 + +1.1 276,777 + -0.7 276,777 + +0.2 276,777 + -0.5 276,778 - -0.3 276,778 - -0.3 276,778 - -1.5 276,778 - -0.3 276,778 - +0.3 276,778 - -0.2 276,778 - -0.8 276,778 - -0.5 276,778 - -0.7 276,778 - +0.7 276,778 - -1.4 276,778 - +0.3 276,778 - -1.6 276,783 + -1.4 276,784 - +0.0 276,870 - MPMX19_06494 0.15 +1.7 276,870 - MPMX19_06494 0.15 -0.8 276,870 - MPMX19_06494 0.15 -0.6 276,913 + MPMX19_06494 0.22 -0.9 276,913 + MPMX19_06494 0.22 -0.3 276,914 - MPMX19_06494 0.23 -0.3 276,914 - MPMX19_06494 0.23 -0.4 276,914 - MPMX19_06494 0.23 +0.0 276,914 - MPMX19_06494 0.23 -0.4 276,914 - MPMX19_06494 0.23 -0.1 277,079 + MPMX19_06494 0.51 -0.0 277,079 + MPMX19_06494 0.51 +0.7 277,079 + MPMX19_06494 0.51 +0.5 277,079 + MPMX19_06494 0.51 -1.0 277,079 + MPMX19_06494 0.51 -1.0 277,079 + MPMX19_06494 0.51 +0.6 277,079 + MPMX19_06494 0.51 -1.7 277,080 - MPMX19_06494 0.51 -1.3 277,080 - MPMX19_06494 0.51 +0.2 277,080 - MPMX19_06494 0.51 -0.6 277,080 - MPMX19_06494 0.51 -0.4 277,080 - MPMX19_06494 0.51 -1.3 277,080 - MPMX19_06494 0.51 -0.5 277,080 - MPMX19_06494 0.51 -0.3 277,080 - MPMX19_06494 0.51 -0.1 277,080 - MPMX19_06494 0.51 +0.6 277,080 - MPMX19_06494 0.51 -1.0 277,080 - MPMX19_06494 0.51 -0.0 277,080 - MPMX19_06494 0.51 -0.2 277,080 - MPMX19_06494 0.51 -1.1 277,080 - MPMX19_06494 0.51 -1.3 277,082 + MPMX19_06494 0.52 +1.1 277,082 + MPMX19_06494 0.52 -1.0 277,083 - MPMX19_06494 0.52 -0.8 277,083 - MPMX19_06494 0.52 -1.0 277,083 - MPMX19_06494 0.52 -0.8 277,083 - MPMX19_06494 0.52 -1.3 277,083 - MPMX19_06494 0.52 +0.9 277,118 + MPMX19_06494 0.58 +0.6 277,118 + MPMX19_06494 0.58 -0.0 277,118 + MPMX19_06494 0.58 -0.9 277,118 + MPMX19_06494 0.58 -0.9 277,118 + MPMX19_06494 0.58 +0.1 277,118 + MPMX19_06494 0.58 -0.3 277,118 + MPMX19_06494 0.58 +0.2 277,118 + MPMX19_06494 0.58 +0.6 277,119 - MPMX19_06494 0.58 +0.9 277,119 - MPMX19_06494 0.58 -0.1 277,119 - MPMX19_06494 0.58 +0.2 277,119 - MPMX19_06494 0.58 -2.1 277,119 - MPMX19_06494 0.58 +0.2 277,119 - MPMX19_06494 0.58 -1.4 277,119 - MPMX19_06494 0.58 -0.9 277,119 - MPMX19_06494 0.58 -0.9 277,189 + MPMX19_06494 0.71 -0.6 277,190 - MPMX19_06494 0.71 +0.3 277,203 - MPMX19_06494 0.73 -2.0 277,203 - MPMX19_06494 0.73 -0.3 277,203 - MPMX19_06494 0.73 -0.5 277,203 - MPMX19_06494 0.73 +0.6 277,314 + +2.2 277,314 + -0.2 277,314 + +0.5 277,314 + +0.2 277,315 - -0.3 277,315 - -1.4 277,325 + +0.2 277,325 + -1.3 277,325 + +0.0 277,325 + -1.3 277,325 + +0.2 277,325 + -0.7 277,326 - -1.7 277,326 - -0.9 277,326 - -0.2 277,326 - -1.3 277,326 - -0.2 277,326 - -0.1 277,326 - -0.1
Or see this region's nucleotide sequence