Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06340 and MPMX19_06341 are separated by 75 nucleotides MPMX19_06341 and MPMX19_06342 are separated by 148 nucleotides MPMX19_06342 and MPMX19_06343 are separated by 94 nucleotides MPMX19_06343 and MPMX19_06344 are separated by 40 nucleotides MPMX19_06344 and MPMX19_06345 are separated by 313 nucleotides
MPMX19_06340: MPMX19_06340 - hypothetical protein, at 108,264 to 108,413
_06340
MPMX19_06341: MPMX19_06341 - hypothetical protein, at 108,489 to 108,833
_06341
MPMX19_06342: MPMX19_06342 - hypothetical protein, at 108,982 to 109,251
_06342
MPMX19_06343: MPMX19_06343 - Acetyl-CoA acetyltransferase, at 109,346 to 110,533
_06343
MPMX19_06344: MPMX19_06344 - hypothetical protein, at 110,574 to 110,780
_06344
MPMX19_06345: MPMX19_06345 - Pyruvate synthase subunit PorC, at 111,094 to 111,651
_06345
Position (kb) 109
110
111 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 108.348 kb on + strand, within MPMX19_06340 at 108.349 kb on - strand, within MPMX19_06340 at 108.485 kb on + strand at 108.485 kb on + strand at 108.485 kb on + strand at 108.486 kb on - strand at 108.486 kb on - strand at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.825 kb on - strand at 108.832 kb on - strand at 108.855 kb on + strand at 108.855 kb on + strand at 108.859 kb on + strand at 108.879 kb on - strand at 108.879 kb on - strand at 108.934 kb on - strand at 108.987 kb on + strand at 108.988 kb on - strand at 108.988 kb on - strand at 109.011 kb on + strand, within MPMX19_06342 at 109.011 kb on + strand, within MPMX19_06342 at 109.011 kb on + strand, within MPMX19_06342 at 109.011 kb on + strand, within MPMX19_06342 at 109.012 kb on - strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.136 kb on + strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.137 kb on - strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.186 kb on + strand, within MPMX19_06342 at 109.187 kb on - strand, within MPMX19_06342 at 109.187 kb on - strand, within MPMX19_06342 at 109.187 kb on - strand, within MPMX19_06342 at 109.187 kb on - strand, within MPMX19_06342 at 109.187 kb on - strand, within MPMX19_06342 at 109.187 kb on - strand, within MPMX19_06342 at 109.187 kb on - strand, within MPMX19_06342 at 109.187 kb on - strand, within MPMX19_06342 at 109.187 kb on - strand, within MPMX19_06342 at 109.188 kb on + strand, within MPMX19_06342 at 109.188 kb on + strand, within MPMX19_06342 at 109.188 kb on + strand, within MPMX19_06342 at 109.188 kb on + strand, within MPMX19_06342 at 109.189 kb on - strand, within MPMX19_06342 at 109.189 kb on - strand, within MPMX19_06342 at 109.189 kb on - strand, within MPMX19_06342 at 109.189 kb on - strand, within MPMX19_06342 at 109.189 kb on - strand, within MPMX19_06342 at 109.249 kb on + strand at 109.250 kb on - strand at 109.342 kb on + strand at 109.342 kb on + strand at 109.342 kb on + strand at 109.342 kb on + strand at 109.342 kb on + strand at 109.342 kb on + strand at 109.342 kb on + strand at 109.343 kb on - strand at 109.343 kb on - strand at 109.343 kb on - strand at 109.343 kb on - strand at 109.343 kb on - strand at 109.343 kb on - strand at 109.718 kb on + strand, within MPMX19_06343 at 109.718 kb on + strand, within MPMX19_06343 at 109.718 kb on + strand, within MPMX19_06343 at 109.718 kb on + strand, within MPMX19_06343 at 109.719 kb on - strand, within MPMX19_06343 at 109.719 kb on - strand, within MPMX19_06343 at 109.719 kb on - strand, within MPMX19_06343 at 109.719 kb on - strand, within MPMX19_06343 at 109.719 kb on - strand, within MPMX19_06343 at 109.719 kb on - strand, within MPMX19_06343 at 109.784 kb on + strand, within MPMX19_06343 at 109.784 kb on + strand, within MPMX19_06343 at 109.784 kb on + strand, within MPMX19_06343 at 109.785 kb on - strand, within MPMX19_06343 at 109.785 kb on - strand, within MPMX19_06343 at 109.785 kb on - strand, within MPMX19_06343 at 109.785 kb on - strand, within MPMX19_06343 at 109.785 kb on - strand, within MPMX19_06343 at 109.785 kb on - strand, within MPMX19_06343 at 109.785 kb on - strand, within MPMX19_06343 at 109.785 kb on - strand, within MPMX19_06343 at 110.006 kb on - strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.183 kb on + strand, within MPMX19_06343 at 110.184 kb on - strand, within MPMX19_06343 at 110.184 kb on - strand, within MPMX19_06343 at 110.184 kb on - strand, within MPMX19_06343 at 110.184 kb on - strand, within MPMX19_06343 at 110.184 kb on - strand, within MPMX19_06343 at 110.184 kb on - strand, within MPMX19_06343 at 110.184 kb on - strand, within MPMX19_06343 at 110.184 kb on - strand, within MPMX19_06343 at 110.188 kb on + strand, within MPMX19_06343 at 110.188 kb on + strand, within MPMX19_06343 at 110.189 kb on - strand, within MPMX19_06343 at 110.573 kb on + strand at 110.573 kb on + strand at 110.573 kb on + strand at 110.573 kb on + strand at 110.573 kb on + strand at 110.573 kb on + strand at 110.573 kb on + strand at 110.574 kb on - strand at 110.574 kb on - strand at 110.574 kb on - strand at 110.574 kb on - strand at 110.574 kb on - strand at 110.574 kb on - strand at 110.574 kb on - strand at 110.574 kb on - strand at 110.574 kb on - strand at 110.937 kb on + strand at 111.061 kb on + strand at 111.110 kb on + strand at 111.110 kb on + strand at 111.111 kb on - strand at 111.330 kb on + strand, within MPMX19_06345 at 111.331 kb on - strand, within MPMX19_06345 at 111.367 kb on + strand, within MPMX19_06345 at 111.367 kb on + strand, within MPMX19_06345 at 111.367 kb on + strand, within MPMX19_06345 at 111.368 kb on - strand, within MPMX19_06345 at 111.368 kb on - strand, within MPMX19_06345 at 111.368 kb on - strand, within MPMX19_06345 at 111.368 kb on - strand, within MPMX19_06345 at 111.368 kb on - strand, within MPMX19_06345 at 111.368 kb on - strand, within MPMX19_06345 at 111.377 kb on + strand, within MPMX19_06345 at 111.377 kb on + strand, within MPMX19_06345 at 111.377 kb on + strand, within MPMX19_06345 at 111.377 kb on + strand, within MPMX19_06345 at 111.378 kb on - strand, within MPMX19_06345 at 111.378 kb on - strand, within MPMX19_06345
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 108,348 + MPMX19_06340 0.56 -0.6 108,349 - MPMX19_06340 0.57 +0.1 108,485 + -1.4 108,485 + -0.8 108,485 + -2.0 108,486 - -1.4 108,486 - -0.6 108,606 + MPMX19_06341 0.34 -1.4 108,606 + MPMX19_06341 0.34 -0.3 108,606 + MPMX19_06341 0.34 -0.5 108,606 + MPMX19_06341 0.34 +0.2 108,606 + MPMX19_06341 0.34 -0.4 108,606 + MPMX19_06341 0.34 -0.4 108,606 + MPMX19_06341 0.34 +1.3 108,606 + MPMX19_06341 0.34 -0.5 108,607 - MPMX19_06341 0.34 -0.7 108,607 - MPMX19_06341 0.34 +1.5 108,607 - MPMX19_06341 0.34 -0.6 108,607 - MPMX19_06341 0.34 -1.8 108,607 - MPMX19_06341 0.34 -0.1 108,607 - MPMX19_06341 0.34 +0.6 108,607 - MPMX19_06341 0.34 -0.3 108,607 - MPMX19_06341 0.34 -0.1 108,825 - +0.6 108,832 - +1.3 108,855 + -0.5 108,855 + +0.5 108,859 + -0.5 108,879 - +0.6 108,879 - +0.1 108,934 - -2.4 108,987 + +0.1 108,988 - +0.7 108,988 - +0.9 109,011 + MPMX19_06342 0.11 +0.7 109,011 + MPMX19_06342 0.11 -0.8 109,011 + MPMX19_06342 0.11 -0.4 109,011 + MPMX19_06342 0.11 +0.1 109,012 - MPMX19_06342 0.11 -0.1 109,136 + MPMX19_06342 0.57 +0.3 109,136 + MPMX19_06342 0.57 -0.5 109,136 + MPMX19_06342 0.57 -1.2 109,136 + MPMX19_06342 0.57 +0.1 109,136 + MPMX19_06342 0.57 +0.2 109,136 + MPMX19_06342 0.57 -0.4 109,136 + MPMX19_06342 0.57 -0.8 109,136 + MPMX19_06342 0.57 +0.5 109,136 + MPMX19_06342 0.57 +0.4 109,136 + MPMX19_06342 0.57 -0.3 109,136 + MPMX19_06342 0.57 +0.3 109,136 + MPMX19_06342 0.57 -0.1 109,137 - MPMX19_06342 0.57 +0.2 109,137 - MPMX19_06342 0.57 -0.1 109,137 - MPMX19_06342 0.57 -1.0 109,137 - MPMX19_06342 0.57 +0.5 109,137 - MPMX19_06342 0.57 -0.6 109,137 - MPMX19_06342 0.57 -1.3 109,137 - MPMX19_06342 0.57 -0.4 109,137 - MPMX19_06342 0.57 +0.3 109,137 - MPMX19_06342 0.57 +0.2 109,137 - MPMX19_06342 0.57 -0.3 109,137 - MPMX19_06342 0.57 +0.9 109,137 - MPMX19_06342 0.57 -0.1 109,186 + MPMX19_06342 0.76 +0.7 109,186 + MPMX19_06342 0.76 +0.4 109,186 + MPMX19_06342 0.76 +0.4 109,186 + MPMX19_06342 0.76 -0.3 109,186 + MPMX19_06342 0.76 -0.7 109,186 + MPMX19_06342 0.76 -0.6 109,186 + MPMX19_06342 0.76 +0.0 109,186 + MPMX19_06342 0.76 -0.3 109,186 + MPMX19_06342 0.76 +1.7 109,186 + MPMX19_06342 0.76 -0.7 109,186 + MPMX19_06342 0.76 -0.7 109,186 + MPMX19_06342 0.76 +0.3 109,186 + MPMX19_06342 0.76 -0.4 109,186 + MPMX19_06342 0.76 +0.2 109,186 + MPMX19_06342 0.76 +0.9 109,186 + MPMX19_06342 0.76 -1.3 109,186 + MPMX19_06342 0.76 +0.4 109,186 + MPMX19_06342 0.76 -0.3 109,186 + MPMX19_06342 0.76 -0.4 109,187 - MPMX19_06342 0.76 +0.7 109,187 - MPMX19_06342 0.76 +0.9 109,187 - MPMX19_06342 0.76 +1.1 109,187 - MPMX19_06342 0.76 -1.7 109,187 - MPMX19_06342 0.76 -0.7 109,187 - MPMX19_06342 0.76 +0.2 109,187 - MPMX19_06342 0.76 +1.3 109,187 - MPMX19_06342 0.76 -0.1 109,187 - MPMX19_06342 0.76 +0.2 109,188 + MPMX19_06342 0.76 -1.0 109,188 + MPMX19_06342 0.76 -0.4 109,188 + MPMX19_06342 0.76 +1.2 109,188 + MPMX19_06342 0.76 +0.1 109,189 - MPMX19_06342 0.77 -0.6 109,189 - MPMX19_06342 0.77 -1.8 109,189 - MPMX19_06342 0.77 -0.8 109,189 - MPMX19_06342 0.77 -0.6 109,189 - MPMX19_06342 0.77 +0.2 109,249 + -1.4 109,250 - +0.9 109,342 + -2.8 109,342 + -0.0 109,342 + -0.1 109,342 + +0.7 109,342 + -0.2 109,342 + -0.5 109,342 + -0.5 109,343 - -2.2 109,343 - -0.2 109,343 - +0.4 109,343 - +0.1 109,343 - -0.6 109,343 - -2.1 109,718 + MPMX19_06343 0.31 -1.1 109,718 + MPMX19_06343 0.31 -0.1 109,718 + MPMX19_06343 0.31 -2.2 109,718 + MPMX19_06343 0.31 -0.7 109,719 - MPMX19_06343 0.31 -0.8 109,719 - MPMX19_06343 0.31 +1.2 109,719 - MPMX19_06343 0.31 -0.8 109,719 - MPMX19_06343 0.31 -0.4 109,719 - MPMX19_06343 0.31 +1.0 109,719 - MPMX19_06343 0.31 -0.7 109,784 + MPMX19_06343 0.37 -0.7 109,784 + MPMX19_06343 0.37 +0.4 109,784 + MPMX19_06343 0.37 -0.7 109,785 - MPMX19_06343 0.37 -0.9 109,785 - MPMX19_06343 0.37 -1.0 109,785 - MPMX19_06343 0.37 +0.8 109,785 - MPMX19_06343 0.37 +0.7 109,785 - MPMX19_06343 0.37 +1.2 109,785 - MPMX19_06343 0.37 -1.4 109,785 - MPMX19_06343 0.37 -0.3 109,785 - MPMX19_06343 0.37 +0.9 110,006 - MPMX19_06343 0.56 +1.1 110,183 + MPMX19_06343 0.70 -0.1 110,183 + MPMX19_06343 0.70 -0.6 110,183 + MPMX19_06343 0.70 -1.1 110,183 + MPMX19_06343 0.70 -1.1 110,183 + MPMX19_06343 0.70 +1.5 110,183 + MPMX19_06343 0.70 +0.2 110,183 + MPMX19_06343 0.70 -0.6 110,183 + MPMX19_06343 0.70 -0.2 110,183 + MPMX19_06343 0.70 +0.1 110,183 + MPMX19_06343 0.70 -0.3 110,183 + MPMX19_06343 0.70 -0.2 110,183 + MPMX19_06343 0.70 -1.0 110,184 - MPMX19_06343 0.71 -1.3 110,184 - MPMX19_06343 0.71 +0.5 110,184 - MPMX19_06343 0.71 +0.5 110,184 - MPMX19_06343 0.71 -0.6 110,184 - MPMX19_06343 0.71 -0.2 110,184 - MPMX19_06343 0.71 +0.3 110,184 - MPMX19_06343 0.71 -0.5 110,184 - MPMX19_06343 0.71 -0.7 110,188 + MPMX19_06343 0.71 -0.8 110,188 + MPMX19_06343 0.71 +0.0 110,189 - MPMX19_06343 0.71 +0.2 110,573 + +0.0 110,573 + -0.3 110,573 + -0.8 110,573 + -1.4 110,573 + +0.1 110,573 + -0.3 110,573 + -3.0 110,574 - +0.2 110,574 - -0.4 110,574 - -0.1 110,574 - -0.6 110,574 - -0.4 110,574 - -1.0 110,574 - +0.7 110,574 - -1.3 110,574 - -1.7 110,937 + -0.5 111,061 + -0.6 111,110 + -1.1 111,110 + -1.1 111,111 - -1.8 111,330 + MPMX19_06345 0.42 +0.2 111,331 - MPMX19_06345 0.42 +0.0 111,367 + MPMX19_06345 0.49 +0.5 111,367 + MPMX19_06345 0.49 +0.4 111,367 + MPMX19_06345 0.49 -0.8 111,368 - MPMX19_06345 0.49 -1.7 111,368 - MPMX19_06345 0.49 -2.3 111,368 - MPMX19_06345 0.49 -2.0 111,368 - MPMX19_06345 0.49 +0.9 111,368 - MPMX19_06345 0.49 -0.9 111,368 - MPMX19_06345 0.49 +0.0 111,377 + MPMX19_06345 0.51 +0.7 111,377 + MPMX19_06345 0.51 -0.4 111,377 + MPMX19_06345 0.51 +1.2 111,377 + MPMX19_06345 0.51 +0.2 111,378 - MPMX19_06345 0.51 +0.2 111,378 - MPMX19_06345 0.51 +0.4
Or see this region's nucleotide sequence