Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05728 and MPMX19_05729 are separated by 25 nucleotides MPMX19_05729 and MPMX19_05730 are separated by 96 nucleotides MPMX19_05730 and MPMX19_05731 are separated by 64 nucleotides
MPMX19_05728: MPMX19_05728 - Glyoxylate/hydroxypyruvate reductase B, at 446,839 to 447,792
_05728
MPMX19_05729: MPMX19_05729 - hypothetical protein, at 447,818 to 448,570
_05729
MPMX19_05730: MPMX19_05730 - hypothetical protein, at 448,667 to 449,161
_05730
MPMX19_05731: MPMX19_05731 - hypothetical protein, at 449,226 to 450,509
_05731
Position (kb) 448
449
450 Strain fitness (log2 ratio) -2
-1
0
1 at 447.692 kb on - strand, within MPMX19_05728 at 447.709 kb on + strand at 447.709 kb on + strand at 447.710 kb on - strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.722 kb on - strand at 448.313 kb on + strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.424 kb on + strand, within MPMX19_05729 at 448.424 kb on + strand, within MPMX19_05729 at 448.425 kb on - strand, within MPMX19_05729 at 448.425 kb on - strand, within MPMX19_05729 at 448.425 kb on - strand, within MPMX19_05729 at 448.425 kb on - strand, within MPMX19_05729 at 448.425 kb on - strand, within MPMX19_05729 at 448.594 kb on + strand at 448.610 kb on + strand at 448.610 kb on + strand at 448.610 kb on + strand at 448.610 kb on + strand at 448.611 kb on - strand at 448.611 kb on - strand at 448.611 kb on - strand at 448.631 kb on - strand at 448.631 kb on - strand at 449.429 kb on + strand, within MPMX19_05731 at 449.430 kb on - strand, within MPMX19_05731 at 449.430 kb on - strand, within MPMX19_05731 at 449.430 kb on - strand, within MPMX19_05731 at 449.431 kb on + strand, within MPMX19_05731 at 449.431 kb on + strand, within MPMX19_05731 at 449.431 kb on + strand, within MPMX19_05731 at 449.431 kb on + strand, within MPMX19_05731 at 449.432 kb on - strand, within MPMX19_05731 at 449.432 kb on - strand, within MPMX19_05731 at 449.432 kb on - strand, within MPMX19_05731 at 449.432 kb on - strand, within MPMX19_05731 at 449.432 kb on - strand, within MPMX19_05731 at 449.737 kb on + strand, within MPMX19_05731 at 449.737 kb on + strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 447,692 - MPMX19_05728 0.89 +0.6 447,709 + -0.0 447,709 + +0.6 447,710 - +0.5 447,721 + -2.2 447,721 + -1.4 447,721 + -0.7 447,721 + -0.4 447,722 - -1.9 448,313 + MPMX19_05729 0.66 -0.2 448,314 - MPMX19_05729 0.66 -0.4 448,314 - MPMX19_05729 0.66 +0.6 448,314 - MPMX19_05729 0.66 -1.9 448,314 - MPMX19_05729 0.66 +1.0 448,314 - MPMX19_05729 0.66 +0.5 448,314 - MPMX19_05729 0.66 +0.2 448,370 + MPMX19_05729 0.73 -0.0 448,370 + MPMX19_05729 0.73 +0.6 448,370 + MPMX19_05729 0.73 +1.3 448,370 + MPMX19_05729 0.73 +0.3 448,370 + MPMX19_05729 0.73 -0.6 448,370 + MPMX19_05729 0.73 -0.8 448,371 - MPMX19_05729 0.73 -0.2 448,371 - MPMX19_05729 0.73 -0.3 448,371 - MPMX19_05729 0.73 -0.2 448,371 - MPMX19_05729 0.73 -0.4 448,371 - MPMX19_05729 0.73 +0.5 448,371 - MPMX19_05729 0.73 -0.6 448,371 - MPMX19_05729 0.73 -0.9 448,424 + MPMX19_05729 0.80 -0.1 448,424 + MPMX19_05729 0.80 +0.6 448,425 - MPMX19_05729 0.81 -0.6 448,425 - MPMX19_05729 0.81 -0.8 448,425 - MPMX19_05729 0.81 -1.4 448,425 - MPMX19_05729 0.81 -1.2 448,425 - MPMX19_05729 0.81 +0.0 448,594 + -0.0 448,610 + -1.9 448,610 + -0.1 448,610 + -0.5 448,610 + -0.4 448,611 - -0.6 448,611 - +0.9 448,611 - +1.3 448,631 - +1.4 448,631 - -0.4 449,429 + MPMX19_05731 0.16 +1.4 449,430 - MPMX19_05731 0.16 +0.1 449,430 - MPMX19_05731 0.16 -0.3 449,430 - MPMX19_05731 0.16 +1.4 449,431 + MPMX19_05731 0.16 -1.4 449,431 + MPMX19_05731 0.16 -1.8 449,431 + MPMX19_05731 0.16 -1.3 449,431 + MPMX19_05731 0.16 -2.2 449,432 - MPMX19_05731 0.16 +1.2 449,432 - MPMX19_05731 0.16 -0.4 449,432 - MPMX19_05731 0.16 -0.5 449,432 - MPMX19_05731 0.16 +0.5 449,432 - MPMX19_05731 0.16 -1.5 449,737 + MPMX19_05731 0.40 -0.7 449,737 + MPMX19_05731 0.40 +0.8 449,738 - MPMX19_05731 0.40 +0.6 449,738 - MPMX19_05731 0.40 -1.2 449,738 - MPMX19_05731 0.40 -0.7 449,738 - MPMX19_05731 0.40 -0.9 449,738 - MPMX19_05731 0.40 -0.4 449,738 - MPMX19_05731 0.40 +0.3
Or see this region's nucleotide sequence