Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05413 and MPMX19_05414 are separated by 139 nucleotides MPMX19_05414 and MPMX19_05415 are separated by 142 nucleotides
MPMX19_05413: MPMX19_05413 - hypothetical protein, at 96,160 to 99,303
_05413
MPMX19_05414: MPMX19_05414 - hypothetical protein, at 99,443 to 99,979
_05414
MPMX19_05415: MPMX19_05415 - Homogentisate 1,2-dioxygenase, at 100,122 to 101,426
_05415
Position (kb) 99
100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.483 kb on + strand, within MPMX19_05413 at 98.483 kb on + strand, within MPMX19_05413 at 98.532 kb on + strand, within MPMX19_05413 at 98.552 kb on + strand, within MPMX19_05413 at 98.553 kb on - strand, within MPMX19_05413 at 98.553 kb on - strand, within MPMX19_05413 at 98.565 kb on - strand, within MPMX19_05413 at 98.586 kb on - strand, within MPMX19_05413 at 98.586 kb on - strand, within MPMX19_05413 at 98.624 kb on + strand, within MPMX19_05413 at 98.624 kb on + strand, within MPMX19_05413 at 98.625 kb on - strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.855 kb on + strand, within MPMX19_05413 at 98.855 kb on + strand, within MPMX19_05413 at 98.856 kb on - strand, within MPMX19_05413 at 98.856 kb on - strand, within MPMX19_05413 at 98.856 kb on - strand, within MPMX19_05413 at 99.110 kb on + strand at 99.110 kb on + strand at 99.110 kb on + strand at 99.110 kb on + strand at 99.110 kb on + strand at 99.110 kb on + strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.210 kb on - strand at 99.210 kb on - strand at 99.210 kb on - strand at 99.384 kb on + strand at 99.385 kb on - strand at 99.385 kb on - strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 100.174 kb on + strand at 100.174 kb on + strand at 100.175 kb on - strand at 100.175 kb on - strand at 100.390 kb on + strand, within MPMX19_05415 at 100.390 kb on + strand, within MPMX19_05415 at 100.390 kb on + strand, within MPMX19_05415 at 100.391 kb on - strand, within MPMX19_05415 at 100.391 kb on - strand, within MPMX19_05415 at 100.539 kb on + strand, within MPMX19_05415 at 100.539 kb on + strand, within MPMX19_05415 at 100.539 kb on + strand, within MPMX19_05415 at 100.540 kb on - strand, within MPMX19_05415 at 100.540 kb on - strand, within MPMX19_05415 at 100.540 kb on - strand, within MPMX19_05415 at 100.609 kb on + strand, within MPMX19_05415 at 100.609 kb on + strand, within MPMX19_05415 at 100.609 kb on + strand, within MPMX19_05415 at 100.609 kb on + strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.732 kb on + strand, within MPMX19_05415 at 100.732 kb on + strand, within MPMX19_05415 at 100.732 kb on + strand, within MPMX19_05415 at 100.732 kb on + strand, within MPMX19_05415 at 100.733 kb on - strand, within MPMX19_05415 at 100.837 kb on + strand, within MPMX19_05415 at 100.837 kb on + strand, within MPMX19_05415 at 100.837 kb on + strand, within MPMX19_05415 at 100.838 kb on - strand, within MPMX19_05415 at 100.838 kb on - strand, within MPMX19_05415 at 100.838 kb on - strand, within MPMX19_05415
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 98,483 + MPMX19_05413 0.74 +0.1 98,483 + MPMX19_05413 0.74 -0.7 98,532 + MPMX19_05413 0.75 +2.1 98,552 + MPMX19_05413 0.76 +0.1 98,553 - MPMX19_05413 0.76 +2.0 98,553 - MPMX19_05413 0.76 +0.3 98,565 - MPMX19_05413 0.76 -0.3 98,586 - MPMX19_05413 0.77 +0.6 98,586 - MPMX19_05413 0.77 -0.1 98,624 + MPMX19_05413 0.78 -0.1 98,624 + MPMX19_05413 0.78 -0.2 98,625 - MPMX19_05413 0.78 -0.4 98,759 + MPMX19_05413 0.83 -1.8 98,759 + MPMX19_05413 0.83 -0.9 98,759 + MPMX19_05413 0.83 -0.4 98,759 + MPMX19_05413 0.83 -0.2 98,759 + MPMX19_05413 0.83 -0.6 98,759 + MPMX19_05413 0.83 +0.1 98,759 + MPMX19_05413 0.83 +1.6 98,759 + MPMX19_05413 0.83 -0.3 98,760 - MPMX19_05413 0.83 +0.3 98,760 - MPMX19_05413 0.83 +0.5 98,760 - MPMX19_05413 0.83 -0.5 98,760 - MPMX19_05413 0.83 +0.6 98,760 - MPMX19_05413 0.83 -1.4 98,760 - MPMX19_05413 0.83 -0.0 98,760 - MPMX19_05413 0.83 +0.1 98,760 - MPMX19_05413 0.83 -1.5 98,855 + MPMX19_05413 0.86 -0.0 98,855 + MPMX19_05413 0.86 -1.3 98,856 - MPMX19_05413 0.86 -0.8 98,856 - MPMX19_05413 0.86 -0.1 98,856 - MPMX19_05413 0.86 -0.9 99,110 + -1.8 99,110 + -0.7 99,110 + -0.2 99,110 + -0.0 99,110 + +0.6 99,110 + -0.7 99,111 - +0.1 99,111 - -0.4 99,111 - -0.2 99,111 - -0.4 99,111 - -0.9 99,111 - -0.2 99,111 - -1.2 99,111 - +0.8 99,111 - -1.5 99,111 - -1.5 99,111 - +0.6 99,111 - +0.8 99,111 - +0.1 99,111 - -0.9 99,111 - +0.1 99,111 - +0.2 99,111 - -0.5 99,209 + -0.4 99,209 + -1.4 99,209 + -0.7 99,209 + +0.4 99,209 + -0.4 99,209 + -1.4 99,209 + -0.4 99,210 - +0.5 99,210 - +0.4 99,210 - +0.1 99,384 + -1.4 99,385 - -1.1 99,385 - -0.8 99,468 + +0.3 99,468 + +0.2 99,468 + -1.7 99,468 + +1.1 99,468 + -0.4 99,468 + +0.1 99,468 + -1.3 99,468 + -1.1 99,468 + -0.4 99,468 + -0.7 99,468 + -0.9 99,468 + -0.1 99,468 + -0.8 99,468 + +1.1 99,468 + +0.2 99,469 - -0.4 99,469 - -1.8 99,469 - -1.7 99,469 - -0.7 99,469 - +0.8 99,469 - +0.6 99,469 - -0.4 99,469 - -2.3 99,469 - -1.0 99,469 - +1.1 100,174 + -1.4 100,174 + -0.5 100,175 - -0.9 100,175 - -0.1 100,390 + MPMX19_05415 0.21 +0.2 100,390 + MPMX19_05415 0.21 -0.2 100,390 + MPMX19_05415 0.21 -1.7 100,391 - MPMX19_05415 0.21 -0.7 100,391 - MPMX19_05415 0.21 -0.4 100,539 + MPMX19_05415 0.32 +0.5 100,539 + MPMX19_05415 0.32 -1.2 100,539 + MPMX19_05415 0.32 -0.9 100,540 - MPMX19_05415 0.32 +0.1 100,540 - MPMX19_05415 0.32 -0.4 100,540 - MPMX19_05415 0.32 -1.7 100,609 + MPMX19_05415 0.37 +0.3 100,609 + MPMX19_05415 0.37 -0.8 100,609 + MPMX19_05415 0.37 -1.3 100,609 + MPMX19_05415 0.37 -0.9 100,610 - MPMX19_05415 0.37 -0.1 100,610 - MPMX19_05415 0.37 +0.1 100,610 - MPMX19_05415 0.37 -0.4 100,610 - MPMX19_05415 0.37 -0.4 100,610 - MPMX19_05415 0.37 +0.1 100,610 - MPMX19_05415 0.37 +1.4 100,732 + MPMX19_05415 0.47 +0.8 100,732 + MPMX19_05415 0.47 +0.9 100,732 + MPMX19_05415 0.47 -0.2 100,732 + MPMX19_05415 0.47 +0.1 100,733 - MPMX19_05415 0.47 +0.6 100,837 + MPMX19_05415 0.55 -0.4 100,837 + MPMX19_05415 0.55 -0.7 100,837 + MPMX19_05415 0.55 -2.4 100,838 - MPMX19_05415 0.55 +1.2 100,838 - MPMX19_05415 0.55 -0.7 100,838 - MPMX19_05415 0.55 -0.2
Or see this region's nucleotide sequence