Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05401

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05400 and MPMX19_05401 are separated by 83 nucleotidesMPMX19_05401 and MPMX19_05402 are separated by 91 nucleotidesMPMX19_05402 and MPMX19_05403 are separated by 121 nucleotides MPMX19_05400: MPMX19_05400 - hypothetical protein, at 79,257 to 81,641 _05400 MPMX19_05401: MPMX19_05401 - 2-methylisocitrate lyase, at 81,725 to 82,570 _05401 MPMX19_05402: MPMX19_05402 - hypothetical protein, at 82,662 to 83,129 _05402 MPMX19_05403: MPMX19_05403 - hypothetical protein, at 83,251 to 84,000 _05403 Position (kb) 81 82 83Strain fitness (log2 ratio) -3 -2 -1 0 1at 80.953 kb on - strand, within MPMX19_05400at 80.953 kb on - strand, within MPMX19_05400at 80.953 kb on - strand, within MPMX19_05400at 80.953 kb on - strand, within MPMX19_05400at 81.013 kb on - strand, within MPMX19_05400at 81.036 kb on + strand, within MPMX19_05400at 81.036 kb on + strand, within MPMX19_05400at 81.036 kb on + strand, within MPMX19_05400at 81.037 kb on - strand, within MPMX19_05400at 81.037 kb on - strand, within MPMX19_05400at 81.037 kb on - strand, within MPMX19_05400at 81.037 kb on - strand, within MPMX19_05400at 81.037 kb on - strand, within MPMX19_05400at 81.054 kb on + strand, within MPMX19_05400at 81.054 kb on + strand, within MPMX19_05400at 81.054 kb on + strand, within MPMX19_05400at 81.055 kb on - strand, within MPMX19_05400at 81.055 kb on - strand, within MPMX19_05400at 81.055 kb on - strand, within MPMX19_05400at 81.055 kb on - strand, within MPMX19_05400at 81.055 kb on - strand, within MPMX19_05400at 81.055 kb on - strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.060 kb on + strand, within MPMX19_05400at 81.061 kb on - strand, within MPMX19_05400at 81.061 kb on - strand, within MPMX19_05400at 81.061 kb on - strand, within MPMX19_05400at 81.061 kb on - strand, within MPMX19_05400at 81.061 kb on - strand, within MPMX19_05400at 81.061 kb on - strand, within MPMX19_05400at 81.061 kb on - strand, within MPMX19_05400at 81.061 kb on - strand, within MPMX19_05400at 81.153 kb on + strand, within MPMX19_05400at 81.153 kb on + strand, within MPMX19_05400at 81.153 kb on + strand, within MPMX19_05400at 81.153 kb on + strand, within MPMX19_05400at 81.153 kb on + strand, within MPMX19_05400at 81.153 kb on + strand, within MPMX19_05400at 81.153 kb on + strand, within MPMX19_05400at 81.154 kb on - strand, within MPMX19_05400at 81.154 kb on - strand, within MPMX19_05400at 81.154 kb on - strand, within MPMX19_05400at 81.154 kb on - strand, within MPMX19_05400at 81.154 kb on - strand, within MPMX19_05400at 81.154 kb on - strand, within MPMX19_05400at 81.154 kb on - strand, within MPMX19_05400at 81.154 kb on - strand, within MPMX19_05400at 81.154 kb on - strand, within MPMX19_05400at 81.154 kb on - strand, within MPMX19_05400at 81.225 kb on + strand, within MPMX19_05400at 81.225 kb on + strand, within MPMX19_05400at 81.225 kb on + strand, within MPMX19_05400at 81.225 kb on + strand, within MPMX19_05400at 81.225 kb on + strand, within MPMX19_05400at 81.225 kb on + strand, within MPMX19_05400at 81.225 kb on + strand, within MPMX19_05400at 81.225 kb on + strand, within MPMX19_05400at 81.225 kb on + strand, within MPMX19_05400at 81.226 kb on - strand, within MPMX19_05400at 81.226 kb on - strand, within MPMX19_05400at 81.226 kb on - strand, within MPMX19_05400at 81.226 kb on - strand, within MPMX19_05400at 81.226 kb on - strand, within MPMX19_05400at 81.226 kb on - strand, within MPMX19_05400at 81.226 kb on - strand, within MPMX19_05400at 81.226 kb on - strand, within MPMX19_05400at 81.226 kb on - strand, within MPMX19_05400at 81.226 kb on - strand, within MPMX19_05400at 81.226 kb on - strand, within MPMX19_05400at 81.279 kb on + strand, within MPMX19_05400at 81.279 kb on + strand, within MPMX19_05400at 81.279 kb on + strand, within MPMX19_05400at 81.279 kb on + strand, within MPMX19_05400at 81.280 kb on - strand, within MPMX19_05400at 81.280 kb on - strand, within MPMX19_05400at 81.280 kb on - strand, within MPMX19_05400at 81.280 kb on - strand, within MPMX19_05400at 81.280 kb on - strand, within MPMX19_05400at 81.280 kb on - strand, within MPMX19_05400at 81.280 kb on - strand, within MPMX19_05400at 81.280 kb on - strand, within MPMX19_05400at 81.280 kb on - strand, within MPMX19_05400at 81.426 kb on + strandat 81.427 kb on - strandat 81.427 kb on - strandat 81.427 kb on - strandat 81.427 kb on - strandat 81.427 kb on - strandat 81.427 kb on - strandat 81.427 kb on - strandat 81.427 kb on - strandat 81.465 kb on + strandat 81.466 kb on - strandat 81.466 kb on - strandat 81.466 kb on - strandat 81.466 kb on - strandat 81.640 kb on - strandat 81.640 kb on - strandat 81.655 kb on + strandat 81.656 kb on - strandat 81.656 kb on - strandat 81.656 kb on - strandat 81.656 kb on - strandat 81.656 kb on - strandat 81.677 kb on - strandat 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.024 kb on - strand, within MPMX19_05401at 82.024 kb on - strand, within MPMX19_05401at 82.050 kb on + strand, within MPMX19_05401at 82.051 kb on - strand, within MPMX19_05401at 82.051 kb on - strand, within MPMX19_05401at 82.051 kb on - strand, within MPMX19_05401at 82.194 kb on + strand, within MPMX19_05401at 82.195 kb on - strand, within MPMX19_05401at 82.195 kb on - strand, within MPMX19_05401at 82.195 kb on - strand, within MPMX19_05401at 82.195 kb on - strand, within MPMX19_05401at 82.608 kb on - strandat 82.699 kb on + strandat 82.699 kb on + strandat 82.699 kb on + strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 83.247 kb on - strandat 83.247 kb on - strandat 83.247 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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80,953 - MPMX19_05400 0.71 -0.5
80,953 - MPMX19_05400 0.71 +0.4
80,953 - MPMX19_05400 0.71 -0.3
80,953 - MPMX19_05400 0.71 -1.2
81,013 - MPMX19_05400 0.74 +0.1
81,036 + MPMX19_05400 0.75 -2.4
81,036 + MPMX19_05400 0.75 +1.0
81,036 + MPMX19_05400 0.75 -1.0
81,037 - MPMX19_05400 0.75 +0.3
81,037 - MPMX19_05400 0.75 +0.3
81,037 - MPMX19_05400 0.75 -0.5
81,037 - MPMX19_05400 0.75 -1.4
81,037 - MPMX19_05400 0.75 -0.1
81,054 + MPMX19_05400 0.75 -0.2
81,054 + MPMX19_05400 0.75 -1.0
81,054 + MPMX19_05400 0.75 -1.5
81,055 - MPMX19_05400 0.75 +0.9
81,055 - MPMX19_05400 0.75 +0.2
81,055 - MPMX19_05400 0.75 +0.0
81,055 - MPMX19_05400 0.75 -0.1
81,055 - MPMX19_05400 0.75 +0.6
81,055 - MPMX19_05400 0.75 +0.7
81,060 + MPMX19_05400 0.76 -1.4
81,060 + MPMX19_05400 0.76 -1.4
81,060 + MPMX19_05400 0.76 -0.8
81,060 + MPMX19_05400 0.76 -0.1
81,060 + MPMX19_05400 0.76 -0.4
81,060 + MPMX19_05400 0.76 +0.1
81,060 + MPMX19_05400 0.76 -2.2
81,060 + MPMX19_05400 0.76 -0.3
81,060 + MPMX19_05400 0.76 +0.2
81,060 + MPMX19_05400 0.76 +0.5
81,060 + MPMX19_05400 0.76 -0.1
81,060 + MPMX19_05400 0.76 -0.4
81,060 + MPMX19_05400 0.76 -1.0
81,060 + MPMX19_05400 0.76 +0.2
81,060 + MPMX19_05400 0.76 -0.6
81,060 + MPMX19_05400 0.76 +0.4
81,060 + MPMX19_05400 0.76 -1.4
81,060 + MPMX19_05400 0.76 -1.2
81,060 + MPMX19_05400 0.76 +1.2
81,060 + MPMX19_05400 0.76 -1.3
81,061 - MPMX19_05400 0.76 -0.1
81,061 - MPMX19_05400 0.76 +1.2
81,061 - MPMX19_05400 0.76 +0.1
81,061 - MPMX19_05400 0.76 -0.0
81,061 - MPMX19_05400 0.76 -1.3
81,061 - MPMX19_05400 0.76 +0.2
81,061 - MPMX19_05400 0.76 -0.5
81,061 - MPMX19_05400 0.76 -2.8
81,153 + MPMX19_05400 0.79 -0.1
81,153 + MPMX19_05400 0.79 -1.2
81,153 + MPMX19_05400 0.79 -0.5
81,153 + MPMX19_05400 0.79 -0.8
81,153 + MPMX19_05400 0.79 -0.8
81,153 + MPMX19_05400 0.79 -1.6
81,153 + MPMX19_05400 0.79 +0.7
81,154 - MPMX19_05400 0.80 -0.2
81,154 - MPMX19_05400 0.80 -0.6
81,154 - MPMX19_05400 0.80 +0.2
81,154 - MPMX19_05400 0.80 -0.9
81,154 - MPMX19_05400 0.80 +0.6
81,154 - MPMX19_05400 0.80 -0.6
81,154 - MPMX19_05400 0.80 -0.4
81,154 - MPMX19_05400 0.80 +0.7
81,154 - MPMX19_05400 0.80 -0.7
81,154 - MPMX19_05400 0.80 -0.7
81,225 + MPMX19_05400 0.83 +0.1
81,225 + MPMX19_05400 0.83 +0.1
81,225 + MPMX19_05400 0.83 +0.2
81,225 + MPMX19_05400 0.83 -1.1
81,225 + MPMX19_05400 0.83 -0.9
81,225 + MPMX19_05400 0.83 +1.6
81,225 + MPMX19_05400 0.83 +0.3
81,225 + MPMX19_05400 0.83 +0.3
81,225 + MPMX19_05400 0.83 -2.4
81,226 - MPMX19_05400 0.83 -1.5
81,226 - MPMX19_05400 0.83 -0.4
81,226 - MPMX19_05400 0.83 -1.3
81,226 - MPMX19_05400 0.83 -1.3
81,226 - MPMX19_05400 0.83 -1.4
81,226 - MPMX19_05400 0.83 -1.2
81,226 - MPMX19_05400 0.83 -0.8
81,226 - MPMX19_05400 0.83 -0.7
81,226 - MPMX19_05400 0.83 -0.2
81,226 - MPMX19_05400 0.83 +0.4
81,226 - MPMX19_05400 0.83 +0.1
81,279 + MPMX19_05400 0.85 +0.4
81,279 + MPMX19_05400 0.85 -0.0
81,279 + MPMX19_05400 0.85 -2.1
81,279 + MPMX19_05400 0.85 +0.1
81,280 - MPMX19_05400 0.85 -1.8
81,280 - MPMX19_05400 0.85 -1.2
81,280 - MPMX19_05400 0.85 -1.5
81,280 - MPMX19_05400 0.85 +0.4
81,280 - MPMX19_05400 0.85 +0.3
81,280 - MPMX19_05400 0.85 -0.9
81,280 - MPMX19_05400 0.85 +0.6
81,280 - MPMX19_05400 0.85 -0.2
81,280 - MPMX19_05400 0.85 -0.2
81,426 + -0.1
81,427 - -0.8
81,427 - -0.5
81,427 - -0.6
81,427 - +0.2
81,427 - +0.2
81,427 - -0.6
81,427 - +0.1
81,427 - -2.5
81,465 + -0.2
81,466 - -0.1
81,466 - -1.4
81,466 - -0.0
81,466 - +0.3
81,640 - -1.9
81,640 - -1.2
81,655 + -1.2
81,656 - -0.8
81,656 - -1.8
81,656 - +1.2
81,656 - -0.2
81,656 - -1.7
81,677 - +0.9
82,023 + MPMX19_05401 0.35 -0.6
82,023 + MPMX19_05401 0.35 -2.5
82,023 + MPMX19_05401 0.35 +1.4
82,023 + MPMX19_05401 0.35 +1.4
82,023 + MPMX19_05401 0.35 +1.6
82,023 + MPMX19_05401 0.35 -1.0
82,023 + MPMX19_05401 0.35 -1.4
82,023 + MPMX19_05401 0.35 -1.0
82,023 + MPMX19_05401 0.35 -2.6
82,024 - MPMX19_05401 0.35 -1.2
82,024 - MPMX19_05401 0.35 -0.1
82,050 + MPMX19_05401 0.38 -0.5
82,051 - MPMX19_05401 0.39 -0.5
82,051 - MPMX19_05401 0.39 -1.1
82,051 - MPMX19_05401 0.39 -1.9
82,194 + MPMX19_05401 0.55 +0.7
82,195 - MPMX19_05401 0.56 -1.5
82,195 - MPMX19_05401 0.56 +0.2
82,195 - MPMX19_05401 0.56 -1.3
82,195 - MPMX19_05401 0.56 +0.1
82,608 - -0.1
82,699 + +0.8
82,699 + +0.1
82,699 + -0.7
82,700 - -1.0
82,700 - -0.5
82,700 - -1.2
82,700 - -1.2
82,700 - +0.1
82,700 - +0.6
82,700 - +0.3
82,837 + MPMX19_05402 0.37 -1.0
82,837 + MPMX19_05402 0.37 +0.4
82,837 + MPMX19_05402 0.37 -0.3
82,837 + MPMX19_05402 0.37 +0.3
82,837 + MPMX19_05402 0.37 -2.5
82,837 + MPMX19_05402 0.37 +0.4
82,837 + MPMX19_05402 0.37 -1.4
82,837 + MPMX19_05402 0.37 -0.1
82,837 + MPMX19_05402 0.37 -1.4
82,837 + MPMX19_05402 0.37 -1.6
82,837 + MPMX19_05402 0.37 -0.2
82,838 - MPMX19_05402 0.38 -0.5
82,838 - MPMX19_05402 0.38 -1.9
82,838 - MPMX19_05402 0.38 -0.4
82,838 - MPMX19_05402 0.38 +0.6
82,838 - MPMX19_05402 0.38 +0.7
82,838 - MPMX19_05402 0.38 +0.4
82,838 - MPMX19_05402 0.38 -0.4
82,838 - MPMX19_05402 0.38 +0.1
82,838 - MPMX19_05402 0.38 -1.1
82,838 - MPMX19_05402 0.38 +0.9
83,247 - +0.2
83,247 - -1.6
83,247 - -1.0

Or see this region's nucleotide sequence