Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05142 and MPMX19_05143 are separated by 688 nucleotides MPMX19_05143 and MPMX19_05144 are separated by 182 nucleotides
MPMX19_05142: MPMX19_05142 - hypothetical protein, at 636,768 to 637,658
_05142
MPMX19_05143: MPMX19_05143 - hypothetical protein, at 638,347 to 638,565
_05143
MPMX19_05144: MPMX19_05144 - hypothetical protein, at 638,748 to 638,882
_05144
Position (kb) 638
639 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 637.393 kb on - strand, within MPMX19_05142 at 637.430 kb on - strand, within MPMX19_05142 at 637.546 kb on + strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.703 kb on + strand at 637.703 kb on + strand at 637.703 kb on + strand at 637.703 kb on + strand at 637.703 kb on + strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.741 kb on - strand at 637.790 kb on + strand at 637.790 kb on + strand at 637.791 kb on - strand at 637.791 kb on - strand at 637.791 kb on - strand at 637.791 kb on - strand at 637.803 kb on + strand at 637.803 kb on + strand at 637.803 kb on + strand at 637.804 kb on - strand at 637.804 kb on - strand at 637.804 kb on - strand at 637.804 kb on - strand at 638.064 kb on + strand at 638.064 kb on + strand at 638.065 kb on - strand at 638.065 kb on - strand at 638.140 kb on + strand at 638.140 kb on + strand at 638.140 kb on + strand at 638.217 kb on + strand at 638.218 kb on - strand at 638.218 kb on - strand at 638.269 kb on - strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.282 kb on - strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.286 kb on - strand at 638.286 kb on - strand at 638.286 kb on - strand at 638.286 kb on - strand at 638.286 kb on - strand at 638.286 kb on - strand at 638.337 kb on + strand at 638.346 kb on + strand at 638.346 kb on + strand at 638.346 kb on + strand at 638.346 kb on + strand at 638.347 kb on - strand at 638.347 kb on - strand at 638.361 kb on + strand at 638.361 kb on + strand at 638.361 kb on + strand at 638.361 kb on + strand at 638.362 kb on - strand at 638.362 kb on - strand at 638.362 kb on - strand at 638.491 kb on + strand, within MPMX19_05143 at 638.491 kb on + strand, within MPMX19_05143 at 638.492 kb on - strand, within MPMX19_05143 at 638.563 kb on + strand at 638.611 kb on + strand at 638.611 kb on + strand at 638.791 kb on + strand, within MPMX19_05144 at 638.792 kb on - strand, within MPMX19_05144 at 638.792 kb on - strand, within MPMX19_05144 at 638.897 kb on + strand at 638.897 kb on + strand at 638.897 kb on + strand at 638.898 kb on - strand at 638.898 kb on - strand at 638.898 kb on - strand at 638.956 kb on + strand at 638.956 kb on + strand at 638.976 kb on + strand at 638.976 kb on + strand at 638.976 kb on + strand at 638.977 kb on - strand at 638.977 kb on - strand at 638.977 kb on - strand at 638.981 kb on - strand at 638.981 kb on - strand at 639.006 kb on + strand at 639.006 kb on + strand at 639.007 kb on - strand at 639.007 kb on - strand at 639.007 kb on - strand at 639.007 kb on - strand at 639.007 kb on - strand at 639.041 kb on + strand at 639.041 kb on + strand at 639.041 kb on + strand at 639.041 kb on + strand at 639.041 kb on + strand at 639.041 kb on - strand at 639.042 kb on - strand at 639.042 kb on - strand at 639.042 kb on - strand at 639.042 kb on - strand at 639.074 kb on + strand at 639.074 kb on + strand at 639.074 kb on + strand at 639.074 kb on + strand at 639.075 kb on - strand at 639.075 kb on - strand at 639.094 kb on + strand at 639.094 kb on + strand at 639.095 kb on - strand at 639.095 kb on - strand at 639.095 kb on - strand at 639.095 kb on - strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.145 kb on - strand at 639.145 kb on - strand at 639.145 kb on - strand at 639.145 kb on - strand at 639.145 kb on - strand at 639.165 kb on + strand at 639.165 kb on + strand at 639.166 kb on - strand at 639.166 kb on - strand at 639.176 kb on + strand at 639.176 kb on + strand at 639.177 kb on - strand at 639.177 kb on - strand at 639.177 kb on - strand at 639.177 kb on - strand at 639.177 kb on - strand at 639.258 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.427 kb on + strand at 639.427 kb on + strand at 639.428 kb on - strand at 639.428 kb on - strand at 639.428 kb on - strand at 639.428 kb on - strand at 639.428 kb on - strand at 639.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 637,393 - MPMX19_05142 0.70 +0.7 637,430 - MPMX19_05142 0.74 -0.7 637,546 + MPMX19_05142 0.87 -1.3 637,547 - MPMX19_05142 0.87 -1.0 637,547 - MPMX19_05142 0.87 +0.3 637,547 - MPMX19_05142 0.87 -1.0 637,547 - MPMX19_05142 0.87 -1.4 637,547 - MPMX19_05142 0.87 +1.3 637,547 - MPMX19_05142 0.87 -0.8 637,547 - MPMX19_05142 0.87 -0.6 637,547 - MPMX19_05142 0.87 -0.9 637,547 - MPMX19_05142 0.87 -0.2 637,547 - MPMX19_05142 0.87 +0.5 637,547 - MPMX19_05142 0.87 -0.2 637,703 + +1.7 637,703 + -0.1 637,703 + +0.6 637,703 + -0.2 637,703 + -1.2 637,704 - -0.2 637,704 - -0.5 637,704 - +0.5 637,704 - -0.5 637,704 - +0.1 637,704 - +0.1 637,704 - -1.9 637,704 - -0.3 637,704 - -0.3 637,741 - -1.3 637,790 + +0.1 637,790 + -1.1 637,791 - -0.6 637,791 - -0.3 637,791 - -1.1 637,791 - -0.4 637,803 + -0.2 637,803 + -0.6 637,803 + -0.0 637,804 - +0.5 637,804 - -0.1 637,804 - +0.7 637,804 - -1.2 638,064 + -0.7 638,064 + +0.4 638,065 - -1.0 638,065 - +0.9 638,140 + -1.2 638,140 + -0.3 638,140 + -1.9 638,217 + +3.0 638,218 - +0.5 638,218 - +0.9 638,269 - -0.2 638,281 + +0.3 638,281 + -0.9 638,281 + -2.3 638,281 + -0.1 638,281 + +1.1 638,281 + -0.3 638,281 + -0.7 638,282 - -0.1 638,285 + -1.0 638,285 + -1.5 638,285 + -0.3 638,285 + -0.5 638,285 + -1.2 638,285 + -1.1 638,285 + +0.0 638,285 + +0.8 638,286 - +0.8 638,286 - -1.5 638,286 - -1.1 638,286 - +0.1 638,286 - -1.3 638,286 - -0.7 638,337 + +0.5 638,346 + +0.5 638,346 + -0.7 638,346 + -0.5 638,346 + -0.5 638,347 - -1.9 638,347 - -1.6 638,361 + +0.4 638,361 + -0.0 638,361 + +1.2 638,361 + +0.7 638,362 - -0.7 638,362 - +0.5 638,362 - -0.6 638,491 + MPMX19_05143 0.66 -0.0 638,491 + MPMX19_05143 0.66 -0.0 638,492 - MPMX19_05143 0.66 +0.2 638,563 + -0.9 638,611 + +0.1 638,611 + +0.7 638,791 + MPMX19_05144 0.32 -1.9 638,792 - MPMX19_05144 0.33 -1.1 638,792 - MPMX19_05144 0.33 -0.6 638,897 + -0.6 638,897 + -0.1 638,897 + -0.1 638,898 - +0.7 638,898 - -2.2 638,898 - -0.1 638,956 + -2.5 638,956 + -1.7 638,976 + +0.6 638,976 + -1.5 638,976 + -0.2 638,977 - -0.0 638,977 - -0.5 638,977 - -0.7 638,981 - +0.1 638,981 - -1.0 639,006 + -0.3 639,006 + +2.7 639,007 - +0.1 639,007 - +0.3 639,007 - -0.5 639,007 - -0.8 639,007 - -0.8 639,041 + +0.5 639,041 + -0.1 639,041 + +0.3 639,041 + -0.3 639,041 + -0.8 639,041 - -1.3 639,042 - -1.5 639,042 - +0.1 639,042 - -1.3 639,042 - +1.1 639,074 + -0.9 639,074 + -0.1 639,074 + +0.3 639,074 + -1.0 639,075 - -0.3 639,075 - -0.3 639,094 + -0.4 639,094 + +0.7 639,095 - -0.7 639,095 - +0.3 639,095 - +0.2 639,095 - -1.1 639,144 + -0.9 639,144 + -0.2 639,144 + -0.3 639,144 + +0.2 639,144 + +1.2 639,144 + -0.9 639,144 + -0.2 639,144 + -1.1 639,144 + -1.3 639,144 + -0.9 639,145 - -0.4 639,145 - +0.0 639,145 - -0.9 639,145 - -0.9 639,145 - -0.2 639,165 + +0.9 639,165 + -1.1 639,166 - -0.9 639,166 - -0.7 639,176 + -0.5 639,176 + -0.1 639,177 - +0.6 639,177 - -0.7 639,177 - +0.3 639,177 - +0.9 639,177 - -1.3 639,258 + +0.7 639,423 + -1.9 639,423 + -0.7 639,423 + -0.1 639,423 + -0.5 639,423 + -1.2 639,423 + -0.8 639,423 + +1.0 639,423 + -2.1 639,423 + +0.3 639,423 + -0.5 639,423 + -2.3 639,423 + -1.9 639,424 - -0.6 639,424 - -0.1 639,424 - -1.1 639,424 - +0.6 639,424 - +0.3 639,424 - +0.5 639,424 - +0.2 639,427 + +0.5 639,427 + -0.3 639,428 - -1.2 639,428 - +0.2 639,428 - +0.1 639,428 - -1.1 639,428 - +0.0 639,428 - +0.4
Or see this region's nucleotide sequence