Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04871 and MPMX19_04872 are separated by 461 nucleotides MPMX19_04872 and MPMX19_04873 are separated by 19 nucleotides MPMX19_04873 and MPMX19_04874 are separated by 20 nucleotides MPMX19_04874 and MPMX19_04875 are separated by 26 nucleotides
MPMX19_04871: MPMX19_04871 - hypothetical protein, at 314,436 to 315,311
_04871
MPMX19_04872: MPMX19_04872 - hypothetical protein, at 315,773 to 317,494
_04872
MPMX19_04873: MPMX19_04873 - hypothetical protein, at 317,514 to 318,059
_04873
MPMX19_04874: MPMX19_04874 - hypothetical protein, at 318,080 to 318,454
_04874
MPMX19_04875: MPMX19_04875 - Sensor histidine kinase WalK, at 318,481 to 319,428
_04875
Position (kb) 315
316
317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 314.923 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 315.046 kb on + strand, within MPMX19_04871 at 315.368 kb on + strand at 315.368 kb on + strand at 315.368 kb on + strand at 315.369 kb on - strand at 315.369 kb on - strand at 315.369 kb on - strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.457 kb on + strand at 315.457 kb on + strand at 315.458 kb on - strand at 315.458 kb on - strand at 315.501 kb on + strand at 315.501 kb on + strand at 315.502 kb on - strand at 315.502 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.557 kb on - strand at 315.557 kb on - strand at 315.557 kb on - strand at 315.585 kb on + strand at 315.585 kb on + strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.667 kb on + strand at 315.685 kb on + strand at 315.686 kb on - strand at 315.806 kb on + strand at 315.806 kb on + strand at 315.807 kb on - strand at 315.807 kb on - strand at 315.807 kb on - strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872 at 316.446 kb on - strand, within MPMX19_04872 at 316.446 kb on - strand, within MPMX19_04872 at 316.446 kb on - strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.533 kb on - strand, within MPMX19_04872 at 316.533 kb on - strand, within MPMX19_04872 at 316.637 kb on + strand, within MPMX19_04872 at 316.638 kb on - strand, within MPMX19_04872 at 316.638 kb on - strand, within MPMX19_04872 at 317.207 kb on + strand, within MPMX19_04872 at 317.207 kb on + strand, within MPMX19_04872 at 317.207 kb on + strand, within MPMX19_04872 at 317.207 kb on + strand, within MPMX19_04872 at 317.207 kb on + strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.510 kb on + strand at 317.511 kb on - strand at 317.511 kb on - strand at 317.511 kb on - strand at 317.511 kb on - strand at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.689 kb on + strand, within MPMX19_04873 at 317.689 kb on - strand, within MPMX19_04873 at 317.689 kb on - strand, within MPMX19_04873 at 317.689 kb on - strand, within MPMX19_04873 at 317.689 kb on - strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.893 kb on + strand, within MPMX19_04873 at 317.894 kb on - strand, within MPMX19_04873 at 317.894 kb on - strand, within MPMX19_04873 at 317.894 kb on - strand, within MPMX19_04873 at 317.904 kb on + strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 318.000 kb on + strand, within MPMX19_04873 at 318.000 kb on + strand, within MPMX19_04873 at 318.000 kb on + strand, within MPMX19_04873 at 318.000 kb on + strand, within MPMX19_04873 at 318.001 kb on - strand, within MPMX19_04873 at 318.027 kb on + strand at 318.027 kb on + strand at 318.055 kb on + strand at 318.055 kb on + strand at 318.055 kb on + strand at 318.055 kb on + strand at 318.056 kb on - strand at 318.057 kb on + strand at 318.073 kb on - strand at 318.073 kb on - strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.079 kb on - strand at 318.079 kb on - strand at 318.079 kb on - strand at 318.079 kb on - strand at 318.079 kb on - strand at 318.079 kb on - strand at 318.171 kb on - strand, within MPMX19_04874 at 318.194 kb on + strand, within MPMX19_04874 at 318.195 kb on - strand, within MPMX19_04874 at 318.224 kb on + strand, within MPMX19_04874 at 318.224 kb on + strand, within MPMX19_04874 at 318.224 kb on + strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.273 kb on - strand, within MPMX19_04874 at 318.273 kb on - strand, within MPMX19_04874 at 318.273 kb on - strand, within MPMX19_04874 at 318.368 kb on + strand, within MPMX19_04874 at 318.368 kb on + strand, within MPMX19_04874 at 318.368 kb on + strand, within MPMX19_04874 at 318.369 kb on - strand, within MPMX19_04874 at 318.369 kb on - strand, within MPMX19_04874 at 318.369 kb on - strand, within MPMX19_04874 at 318.369 kb on - strand, within MPMX19_04874 at 318.369 kb on - strand, within MPMX19_04874
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 314,923 + MPMX19_04871 0.56 -2.1 314,932 + MPMX19_04871 0.57 -1.6 314,932 + MPMX19_04871 0.57 -0.8 314,932 + MPMX19_04871 0.57 -1.0 314,932 + MPMX19_04871 0.57 +0.5 314,932 + MPMX19_04871 0.57 +0.9 314,932 + MPMX19_04871 0.57 -1.2 314,932 + MPMX19_04871 0.57 +0.4 314,932 + MPMX19_04871 0.57 -1.5 314,933 - MPMX19_04871 0.57 +1.3 314,933 - MPMX19_04871 0.57 +1.8 314,933 - MPMX19_04871 0.57 -0.9 314,933 - MPMX19_04871 0.57 -0.8 314,933 - MPMX19_04871 0.57 -0.9 314,933 - MPMX19_04871 0.57 +0.6 314,933 - MPMX19_04871 0.57 -1.7 314,933 - MPMX19_04871 0.57 +0.2 314,933 - MPMX19_04871 0.57 -0.6 314,933 - MPMX19_04871 0.57 +1.4 315,046 + MPMX19_04871 0.70 +0.0 315,368 + +1.0 315,368 + +0.2 315,368 + +1.4 315,369 - +0.6 315,369 - +0.3 315,369 - -0.8 315,378 + -1.2 315,378 + -0.3 315,378 + -0.7 315,378 + +1.2 315,378 + +0.4 315,378 + -1.7 315,379 - -1.5 315,379 - +0.4 315,379 - -0.8 315,379 - -0.0 315,379 - +1.3 315,379 - -0.5 315,457 + -0.5 315,457 + -0.1 315,458 - -1.8 315,458 - -0.4 315,501 + -0.4 315,501 + -0.0 315,502 - +0.2 315,502 - -0.8 315,536 - -0.6 315,536 - -0.0 315,536 - -0.0 315,536 - -0.8 315,536 - -1.0 315,536 - -1.1 315,557 - -0.5 315,557 - -0.0 315,557 - +0.9 315,585 + +0.1 315,585 + +0.8 315,592 - -2.2 315,592 - -0.0 315,592 - +0.2 315,592 - +0.1 315,667 + -0.9 315,685 + -0.0 315,686 - -2.0 315,806 + -1.0 315,806 + -0.0 315,807 - -0.4 315,807 - -0.8 315,807 - +0.2 315,808 + +0.6 315,808 + +0.4 315,808 + +0.0 315,808 + +0.4 315,809 - +0.4 315,809 - -1.1 315,809 - -1.7 315,809 - -1.0 315,809 - -0.3 315,809 - -0.8 315,809 - -0.5 315,809 - +2.4 316,271 + MPMX19_04872 0.29 +0.8 316,271 + MPMX19_04872 0.29 -0.0 316,271 + MPMX19_04872 0.29 +2.0 316,271 + MPMX19_04872 0.29 +0.2 316,271 + MPMX19_04872 0.29 -0.2 316,271 + MPMX19_04872 0.29 -1.1 316,271 + MPMX19_04872 0.29 +0.1 316,271 + MPMX19_04872 0.29 +1.2 316,271 + MPMX19_04872 0.29 -1.1 316,272 - MPMX19_04872 0.29 -1.1 316,272 - MPMX19_04872 0.29 +0.0 316,272 - MPMX19_04872 0.29 +0.4 316,446 - MPMX19_04872 0.39 +0.6 316,446 - MPMX19_04872 0.39 -0.1 316,446 - MPMX19_04872 0.39 -0.7 316,532 + MPMX19_04872 0.44 +0.9 316,532 + MPMX19_04872 0.44 -0.4 316,532 + MPMX19_04872 0.44 -1.7 316,532 + MPMX19_04872 0.44 -0.3 316,532 + MPMX19_04872 0.44 +0.2 316,532 + MPMX19_04872 0.44 +0.4 316,532 + MPMX19_04872 0.44 -1.4 316,532 + MPMX19_04872 0.44 -1.9 316,533 - MPMX19_04872 0.44 +0.0 316,533 - MPMX19_04872 0.44 -0.7 316,637 + MPMX19_04872 0.50 -0.2 316,638 - MPMX19_04872 0.50 +0.2 316,638 - MPMX19_04872 0.50 +0.3 317,207 + MPMX19_04872 0.83 -0.2 317,207 + MPMX19_04872 0.83 +0.3 317,207 + MPMX19_04872 0.83 -0.9 317,207 + MPMX19_04872 0.83 -0.9 317,207 + MPMX19_04872 0.83 +0.2 317,208 - MPMX19_04872 0.83 +0.5 317,208 - MPMX19_04872 0.83 -0.1 317,208 - MPMX19_04872 0.83 -2.0 317,208 - MPMX19_04872 0.83 -0.6 317,208 - MPMX19_04872 0.83 -1.1 317,208 - MPMX19_04872 0.83 +0.0 317,208 - MPMX19_04872 0.83 +1.2 317,208 - MPMX19_04872 0.83 -0.2 317,510 + -0.9 317,511 - -0.6 317,511 - -0.8 317,511 - -0.4 317,511 - -1.0 317,688 + MPMX19_04873 0.32 +0.6 317,688 + MPMX19_04873 0.32 -0.2 317,688 + MPMX19_04873 0.32 +0.3 317,688 + MPMX19_04873 0.32 -0.6 317,688 + MPMX19_04873 0.32 +1.0 317,688 + MPMX19_04873 0.32 +0.5 317,688 + MPMX19_04873 0.32 +0.4 317,689 + MPMX19_04873 0.32 +0.1 317,689 - MPMX19_04873 0.32 -0.0 317,689 - MPMX19_04873 0.32 -0.8 317,689 - MPMX19_04873 0.32 -0.2 317,689 - MPMX19_04873 0.32 +0.4 317,718 + MPMX19_04873 0.37 +1.0 317,718 + MPMX19_04873 0.37 +0.6 317,718 + MPMX19_04873 0.37 +0.0 317,718 + MPMX19_04873 0.37 +0.8 317,718 + MPMX19_04873 0.37 +0.2 317,718 + MPMX19_04873 0.37 +1.4 317,719 - MPMX19_04873 0.38 -1.0 317,719 - MPMX19_04873 0.38 +0.1 317,719 - MPMX19_04873 0.38 -0.4 317,719 - MPMX19_04873 0.38 +0.3 317,719 - MPMX19_04873 0.38 -1.2 317,719 - MPMX19_04873 0.38 -1.6 317,719 - MPMX19_04873 0.38 -0.9 317,799 + MPMX19_04873 0.52 +1.4 317,799 + MPMX19_04873 0.52 -0.3 317,799 + MPMX19_04873 0.52 -0.1 317,799 + MPMX19_04873 0.52 +2.4 317,799 + MPMX19_04873 0.52 -0.2 317,799 + MPMX19_04873 0.52 +0.2 317,799 + MPMX19_04873 0.52 -0.6 317,799 + MPMX19_04873 0.52 +0.0 317,799 + MPMX19_04873 0.52 -1.0 317,799 + MPMX19_04873 0.52 -0.7 317,800 - MPMX19_04873 0.52 -0.5 317,800 - MPMX19_04873 0.52 +0.2 317,800 - MPMX19_04873 0.52 -0.9 317,800 - MPMX19_04873 0.52 -0.2 317,800 - MPMX19_04873 0.52 -1.8 317,800 - MPMX19_04873 0.52 +2.3 317,800 - MPMX19_04873 0.52 +1.1 317,800 - MPMX19_04873 0.52 -0.8 317,800 - MPMX19_04873 0.52 +0.2 317,800 - MPMX19_04873 0.52 +0.2 317,800 - MPMX19_04873 0.52 -0.2 317,893 + MPMX19_04873 0.69 -1.0 317,894 - MPMX19_04873 0.70 -0.4 317,894 - MPMX19_04873 0.70 +0.2 317,894 - MPMX19_04873 0.70 +0.8 317,904 + MPMX19_04873 0.71 +0.3 317,905 - MPMX19_04873 0.72 -0.2 317,905 - MPMX19_04873 0.72 +0.2 317,905 - MPMX19_04873 0.72 -1.3 317,905 - MPMX19_04873 0.72 -0.1 317,905 - MPMX19_04873 0.72 +0.9 317,905 - MPMX19_04873 0.72 -1.2 318,000 + MPMX19_04873 0.89 -0.1 318,000 + MPMX19_04873 0.89 -1.4 318,000 + MPMX19_04873 0.89 -0.2 318,000 + MPMX19_04873 0.89 -1.4 318,001 - MPMX19_04873 0.89 -1.2 318,027 + +0.2 318,027 + +1.5 318,055 + -0.7 318,055 + +0.6 318,055 + +0.6 318,055 + -0.7 318,056 - +0.2 318,057 + +1.2 318,073 - +0.8 318,073 - -0.0 318,078 + +0.3 318,078 + +0.4 318,078 + -0.2 318,078 + -0.3 318,078 + -0.8 318,078 + +0.8 318,078 + -0.6 318,079 - -0.3 318,079 - -1.4 318,079 - +0.2 318,079 - -2.1 318,079 - -0.2 318,079 - +0.8 318,171 - MPMX19_04874 0.24 -0.8 318,194 + MPMX19_04874 0.30 -0.8 318,195 - MPMX19_04874 0.31 -3.3 318,224 + MPMX19_04874 0.38 +0.2 318,224 + MPMX19_04874 0.38 +2.4 318,224 + MPMX19_04874 0.38 +0.4 318,225 - MPMX19_04874 0.39 -0.2 318,225 - MPMX19_04874 0.39 -0.6 318,225 - MPMX19_04874 0.39 +1.0 318,225 - MPMX19_04874 0.39 -0.8 318,225 - MPMX19_04874 0.39 +0.2 318,225 - MPMX19_04874 0.39 +1.1 318,272 + MPMX19_04874 0.51 -1.8 318,272 + MPMX19_04874 0.51 -0.1 318,272 + MPMX19_04874 0.51 +0.4 318,272 + MPMX19_04874 0.51 +0.2 318,272 + MPMX19_04874 0.51 -0.8 318,272 + MPMX19_04874 0.51 -1.6 318,273 - MPMX19_04874 0.51 -0.6 318,273 - MPMX19_04874 0.51 -0.6 318,273 - MPMX19_04874 0.51 -0.6 318,368 + MPMX19_04874 0.77 +0.2 318,368 + MPMX19_04874 0.77 +0.3 318,368 + MPMX19_04874 0.77 -0.1 318,369 - MPMX19_04874 0.77 -1.2 318,369 - MPMX19_04874 0.77 +0.8 318,369 - MPMX19_04874 0.77 +0.2 318,369 - MPMX19_04874 0.77 -1.1 318,369 - MPMX19_04874 0.77 +0.8
Or see this region's nucleotide sequence